Identification of a nuclear domain with deacetylase activity.

Abstract:

:Here, we describe the identification and characterization of a nuclear body (matrix-associated deacetylase body) whose formation and integrity depend on deacetylase activity. Typically, there are 20-40 0.5-microM bodies per nucleus, although the size and number can vary substantially. The structure appears to contain both class I and the recently described class II histone deacetylases (HDAC)5 and 7 along with the nuclear receptor corepressors SMRT (silencing mediator for retinoid and thyroid receptor) and N-CoR (nuclear receptor corepressor). Addition of the deacetylase inhibitors trichostatin A and sodium butyrate completely disrupt these nuclear bodies, providing a demonstration that the integrity of a nuclear body is enzyme dependent. We demonstrate that HDAC5 and 7 can associate with at least 12 distinct proteins, including several members of the NuRD and Sin3A repression complexes, and appear to define a new but related complex.

authors

Downes M,Ordentlich P,Kao HY,Alvarez JG,Evans RM

doi

10.1073/pnas.97.19.10330

keywords:

subject

Has Abstract

pub_date

2000-09-12 00:00:00

pages

10330-5

issue

19

eissn

0027-8424

issn

1091-6490

pii

97/19/10330

journal_volume

97

pub_type

杂志文章
  • Foundational model of structural connectivity in the nervous system with a schema for wiring diagrams, connectome, and basic plan architecture.

    abstract::The nervous system is a biological computer integrating the body's reflex and voluntary environmental interactions (behavior) with a relatively constant internal state (homeostasis)-- promoting survival of the individual and species. The wiring diagram of the nervous system's structural connectivity provides an obliga...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1015128107

    authors: Swanson LW,Bota M

    更新日期:2010-11-30 00:00:00

  • Amantadine-induced conformational and dynamical changes of the influenza M2 transmembrane proton channel.

    abstract::The M2 protein of influenza A virus forms a transmembrane proton channel important for viral infection and replication. Amantadine blocks this channel, thus inhibiting viral replication. Elucidating the high-resolution structure of the M2 protein and its change upon amantadine binding is crucial for designing antivira...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0711500105

    authors: Cady SD,Hong M

    更新日期:2008-02-05 00:00:00

  • Sticky ions in biological systems.

    abstract::Aqueous gel sieving chromatography on Sephadex G-10 of the Group IA cations (Li+, Na+, K+, Rb+, Cs+) plus NH4+ as the Cl- salts, in combination with previous results for the halide anions (F-, Cl-, Br-, I-) as the Na+ salts [Washabaugh, M.W. & Collins, K.D. (1986) J. Biol. Chem. 261, 12477-12485], leads to the followi...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.92.12.5553

    authors: Collins KD

    更新日期:1995-06-06 00:00:00

  • Circular RNAs: relics of precellular evolution?

    abstract::The demonstration of enzymatic capabilities of certain RNAs, in addition to their well-known template properties, has led to the recognition that RNAs are the only biological macromolecules that can function both as genotype and phenotype, hence raising the possibility of Darwinian selection and precellular evolution ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.86.23.9370

    authors: Diener TO

    更新日期:1989-12-01 00:00:00

  • Enteroendocrine precursors differentiate independently of Wnt and form serotonin expressing adenomas in response to active beta-catenin.

    abstract::Wnt signaling is required for the maintenance of intestinal stem cells and self-renewal of the intestinal epithelium. Intestinal cancers are frequently associated with mutations that activate the Wnt pathway. The role of Wnt signaling on differentiation of lineage-specific precursors in the intestine is not well chara...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0702665104

    authors: Wang Y,Giel-Moloney M,Rindi G,Leiter AB

    更新日期:2007-07-03 00:00:00

  • A reinvestigation of a synthetic peptide (TrPepz) designed to mimic trypsin.

    abstract::Recently, a 29-residue cyclic peptide was synthesized (TrPepz) that was reported to possess nearly the same catalytic activity and specificity as the pancreatic serine protease, trypsin, for hydrolysis of a small ester substrate, N-tosyl-L-arginine methyl ester (TAME), and small and large peptides [Atassi, M. Z. & Man...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.91.10.4110

    authors: Wells JA,Fairbrother WJ,Otlewski J,Laskowski M Jr,Burnier J

    更新日期:1994-05-10 00:00:00

  • Rediscovery of the nucleolinus, a dynamic RNA-rich organelle associated with the nucleolus, spindle, and centrosomes.

    abstract::The nucleolinus is an RNA-rich compartment, closely apposed to or embedded within the nucleolus. Discovered over 150 y ago, fewer than two dozen articles have been published on the nucleolinus, probably because complex histochemical stains are required for its visualization in the great majority of cells. The nucleoli...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1008469107

    authors: Alliegro MA,Henry JJ,Alliegro MC

    更新日期:2010-08-03 00:00:00

  • Cotranslational folding cooperativity of contiguous domains of α-spectrin.

    abstract::Proteins synthesized in the cell can begin to fold during translation before the entire polypeptide has been produced, which may be particularly relevant to the folding of multidomain proteins. Here, we study the cotranslational folding of adjacent domains from the cytoskeletal protein α-spectrin using force profile a...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1909683117

    authors: Kemp G,Nilsson OB,Tian P,Best RB,von Heijne G

    更新日期:2020-06-23 00:00:00

  • Persistence of learning-induced synapses depends on neurotrophic priming of glucocorticoid receptors.

    abstract::Stress can either promote or impair learning and memory. Such opposing effects depend on whether synapses persist or decay after learning. Maintenance of new synapses formed at the time of learning upon neuronal network activation depends on the stress hormone-activated glucocorticoid receptor (GR) and neurotrophic fa...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1903203116

    authors: Arango-Lievano M,Borie AM,Dromard Y,Murat M,Desarmenien MG,Garabedian MJ,Jeanneteau F

    更新日期:2019-06-25 00:00:00

  • HSP90 is a chaperone for DLK and is required for axon injury signaling.

    abstract::Peripheral nerve injury induces a robust proregenerative program that drives axon regeneration. While many regeneration-associated genes are known, the mechanisms by which injury activates them are less well-understood. To identify such mechanisms, we performed a loss-of-function pharmacological screen in cultured adu...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1805351115

    authors: Karney-Grobe S,Russo A,Frey E,Milbrandt J,DiAntonio A

    更新日期:2018-10-16 00:00:00

  • Interferon alpha induces protein kinase C-epsilon (PKC-epsilon) gene expression and a 4.7-kb PKC-epsilon-related transcript.

    abstract::Protein kinases play key roles in the induction by human interferon alpha (IFN-alpha) of specific gene expression and biological activity in various human cell lines. We now report that IFN-alpha increased the 7-kb transcript for the epsilon isotype of protein kinase C (PKC-epsilon) and the cellular content of PKC-eps...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.90.15.6944

    authors: Wang C,Constantinescu SN,MacEwan DJ,Strulovici B,Dekker LV,Parker PJ,Pfeffer LM

    更新日期:1993-08-01 00:00:00

  • Regulation of Cl- transport in T84 cell clones expressing a mutant regulatory subunit of cAMP-dependent protein kinase.

    abstract::Cl- channels in the apical membranes of salt-secreting epithelia are activated by both cAMP and Ca2+ second-messenger systems, and dysfunctions in their hormonal regulation have been demonstrated in patients with cystic fibrosis. We have transfected the epithelial cell line T84 with an expression vector containing a m...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.22.8975

    authors: Rogers KV,Goldman PS,Frizzell RA,McKnight GS

    更新日期:1990-11-01 00:00:00

  • Interaction of Galpha 12 and Galpha 13 with the cytoplasmic domain of cadherin provides a mechanism for beta -catenin release.

    abstract::The G12 subfamily of heterotrimeric G proteins, comprised of the alpha-subunits Galpha12 and Galpha13, has been implicated as a signaling component in cellular processes ranging from cytoskeletal changes to cell growth and oncogenesis. In an attempt to elucidate specific roles of this subfamily in cell regulation, we ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.021350998

    authors: Meigs TE,Fields TA,McKee DD,Casey PJ

    更新日期:2001-01-16 00:00:00

  • Overreplication and recombination of DNA in higher eukaryotes: potential consequences and biological implications.

    abstract::We propose that a fundamental problem in the faithful replication of complex chromosomes of higher eukaryotes is the proper control of both the number and timing of the multiple initiations of replication on single chromosomes. When replication patterns are disrupted by any of a variety of agents, overreplication of D...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.83.7.2157

    authors: Schimke RT,Sherwood SW,Hill AB,Johnston RN

    更新日期:1986-04-01 00:00:00

  • A superior descriptor of random textures and its predictive capacity.

    abstract::Two-phase random textures abound in a host of contexts, including porous and composite media, ecological structures, biological media, and astrophysical structures. Questions surrounding the spatial structure of such textures continue to pose many theoretical challenges. For example, can two-point correlation function...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0905919106

    authors: Jiao Y,Stillinger FH,Torquato S

    更新日期:2009-10-20 00:00:00

  • Industrial emissions cause extreme urban ozone diurnal variability.

    abstract::Simulations with a regional chemical transport model show that anthropogenic emissions of volatile organic compounds and nitrogen oxides (NO(x) = NO + NO(2)) lead to a dramatic diurnal variation of surface ozone (O(3)) in Houston, Texas. During the daytime, photochemical oxidation of volatile organic compounds catalyz...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0401484101

    authors: Zhang R,Lei W,Tie X,Hess P

    更新日期:2004-04-27 00:00:00

  • Insights into the mechanism of microtubule stabilization by Taxol.

    abstract::The antitumor drug Taxol stabilizes microtubules and reduces their dynamicity, promoting mitotic arrest and cell death. Upon assembly of the alpha/beta-tubulin heterodimer, GTP bound to beta-tubulin is hydrolyzed to GDP reaching a steady-state equilibrium between free tubulin dimers and microtubules. The binding of Ta...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0603704103

    authors: Xiao H,Verdier-Pinard P,Fernandez-Fuentes N,Burd B,Angeletti R,Fiser A,Horwitz SB,Orr GA

    更新日期:2006-07-05 00:00:00

  • Calcium transport into the cells of the sea urchin larva in relation to spicule formation.

    abstract::We investigated the manner in which the sea urchin larva takes up calcium from its body cavity into the primary mesenchymal cells (PMCs) that are responsible for spicule formation. We used the membrane-impermeable fluorescent dye calcein and alexa-dextran, with or without a calcium channel inhibitor, and imaged the la...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1612017113

    authors: Vidavsky N,Addadi S,Schertel A,Ben-Ezra D,Shpigel M,Addadi L,Weiner S

    更新日期:2016-11-08 00:00:00

  • Transdermal cold atmospheric plasma-mediated immune checkpoint blockade therapy.

    abstract::Despite the promise of immune checkpoint blockade (ICB) therapy against cancer, challenges associated with low objective response rates and severe systemic side effects still remain and limit its clinical applications. Here, we described a cold atmospheric plasma (CAP)-mediated ICB therapy integrated with microneedles...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1917891117

    authors: Chen G,Chen Z,Wen D,Wang Z,Li H,Zeng Y,Dotti G,Wirz RE,Gu Z

    更新日期:2020-02-18 00:00:00

  • nanos function is essential for development and regeneration of planarian germ cells.

    abstract::Germ cells are required for the successful propagation of sexually reproducing species. Understanding the mechanisms by which these cells are specified and how their totipotency is established and maintained has important biomedical and evolutionary implications. Freshwater planarians serve as fascinating models for s...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0609708104

    authors: Wang Y,Zayas RM,Guo T,Newmark PA

    更新日期:2007-04-03 00:00:00

  • Solving matrix equations in one step with cross-point resistive arrays.

    abstract::Conventional digital computers can execute advanced operations by a sequence of elementary Boolean functions of 2 or more bits. As a result, complicated tasks such as solving a linear system or solving a differential equation require a large number of computing steps and an extensive use of memory units to store indiv...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1815682116

    authors: Sun Z,Pedretti G,Ambrosi E,Bricalli A,Wang W,Ielmini D

    更新日期:2019-03-05 00:00:00

  • Nutritional impact of elevated calcium transport activity in carrots.

    abstract::Nutrition recommendations worldwide emphasize ingestion of plant-based diets rather than diets that rely primarily on animal products. However, this plant-based diet could limit the intake of essential nutrients such as calcium. Osteoporosis is one of the world's most prevalent nutritional disorders, and inadequate di...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章,随机对照试验

    doi:10.1073/pnas.0709005105

    authors: Morris J,Hawthorne KM,Hotze T,Abrams SA,Hirschi KD

    更新日期:2008-02-05 00:00:00

  • PHIP as a therapeutic target for driver-negative subtypes of melanoma, breast, and lung cancer.

    abstract::The identification and targeting of key molecular drivers of melanoma and breast and lung cancer have substantially improved their therapy. However, subtypes of each of these three common, lethal solid tumors lack identified molecular drivers, and are thus not amenable to targeted therapies. Here we show that pleckstr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1804779115

    authors: de Semir D,Bezrookove V,Nosrati M,Dar AA,Wu C,Shen J,Rieken C,Venkatasubramanian M,Miller JR 3rd,Desprez PY,McAllister S,Soroceanu L,Debs RJ,Salomonis N,Schadendorf D,Cleaver JE,Kashani-Sabet M

    更新日期:2018-06-19 00:00:00

  • Arc regulates spine morphology and maintains network stability in vivo.

    abstract::Long-term memory relies on modulation of synaptic connections in response to experience. This plasticity involves trafficking of AMPA receptors (AMPAR) and alteration of spine morphology. Arc, a gene induced by synaptic activity, mediates the endocytosis of AMPA receptors and is required for both long-term and homeost...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1006546107

    authors: Peebles CL,Yoo J,Thwin MT,Palop JJ,Noebels JL,Finkbeiner S

    更新日期:2010-10-19 00:00:00

  • Thermotaxis of Dictyostelium discoideum amoebae and its possible role in pseudoplasmodial thermotaxis.

    abstract::Thermotaxis by individual amoebae of Dictyostelium discoideum on a temperature gradient is described. These amoebae show positive thermotaxis at temperatures between 14 degrees C and 28 degrees C shortly (3 hr) after food depletion. Increasing time on the gradient reduces the positive thermotactic response at the lowe...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.80.18.5646

    authors: Hong CB,Fontana DR,Poff KL

    更新日期:1983-09-01 00:00:00

  • Fusion of dipalmitoylphosphatidylcholine vesicle membranes induced by concanavalin A.

    abstract::The temperature dependence of fatty acid spin label resonance spectra and freeze fracture micrographs of sonicated dipalmitoylphosphatidylcholine vesicles in the absence and presence of concanavalin A demonstrate a strong interaction of concanavalin A with these lipid membranes, which results in fusion of the vesicles...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.72.11.4409

    authors: van der Bosch J,McConnell M

    更新日期:1975-11-01 00:00:00

  • Defects in inositol 1,4,5-trisphosphate receptor expression, Ca(2+) signaling, and insulin secretion in the anx7(+/-) knockout mouse.

    abstract::The mammalian anx7 gene codes for a Ca(2+)-activated GTPase, which supports Ca(2+)/GTP-dependent secretion events and Ca(2+) channel activities in vitro and in vivo. To test whether anx7 might be involved in Ca(2+) signaling in secreting pancreatic beta cells, we knocked out the anx7 gene in the mouse and tested the i...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.24.13783

    authors: Srivastava M,Atwater I,Glasman M,Leighton X,Goping G,Caohuy H,Miller G,Pichel J,Westphal H,Mears D,Rojas E,Pollard HB

    更新日期:1999-11-23 00:00:00

  • A family of chromatin remodeling factors related to Williams syndrome transcription factor.

    abstract::Chromatin remodeling complexes have been implicated in the disruption or reformation of nucleosomal arrays resulting in modulation of transcription, DNA replication, and DNA repair. Here we report the isolation of WCRF, a new chromatin-remodeling complex from HeLa cells. WCRF is composed of two subunits, WCRF135, the ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.97.3.1038

    authors: Bochar DA,Savard J,Wang W,Lafleur DW,Moore P,Côté J,Shiekhattar R

    更新日期:2000-02-01 00:00:00

  • Targeted habitat restoration can reduce extinction rates in fragmented forests.

    abstract::The Eastern Arc Mountains of Tanzania and the Atlantic Forest of Brazil are two of the most fragmented biodiversity hotspots. Species-area relationships predict that their habitat fragments will experience a substantial loss of species. Most of these extinctions will occur over an extended time, and therefore, reconne...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1705834114

    authors: Newmark WD,Jenkins CN,Pimm SL,McNeally PB,Halley JM

    更新日期:2017-09-05 00:00:00

  • Differences in spontaneous mutation frequencies as a function of environmental stress in soil fungi at "Evolution Canyon," Israel.

    abstract::When various wild strains of Penicillium lanosum and Aspergillus niger were placed in the same mild laboratory environment, their frequencies of new spontaneous mutations were clearly related to whether they had been isolated from a region of high or low microclimatic stress. In the mild environment, the total frequen...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0801995105

    authors: Lamb BC,Mandaokar S,Bahsoun B,Grishkan I,Nevo E

    更新日期:2008-04-15 00:00:00