Abstract:
:We are currently facing a pandemic of COVID-19, caused by a spillover from an animal-originating coronavirus to humans occurring in the Wuhan region of China in December 2019. From China, the virus has spread to 188 countries and regions worldwide, reaching the Sahel region on March 2, 2020. Since whole genome sequencing (WGS) data is very crucial to understand the spreading dynamics of the ongoing pandemic, but only limited sequencing data is available from the Sahel region to date, we have focused our efforts on generating the first Malian sequencing data available. Screening 217 Malian patient samples for the presence of SARS-CoV-2 resulted in 38 positive isolates, from which 21 whole genome sequences were generated. Our analysis shows that both the early A (19B) and the later observed B (20A/C) clade are present in Mali, indicating multiple and independent introductions of SARS-CoV-2 to the Sahel region.
journal_name
Virusesjournal_title
Virusesauthors
Kouriba B,Dürr A,Rehn A,Sangaré AK,Traoré BY,Bestehorn-Willmann MS,Ouedraogo J,Heitzer A,Sogodogo E,Maiga A,Walter MC,Zimmermann F,Wölfel R,Antwerpen MHdoi
10.3390/v12111251subject
Has Abstractpub_date
2020-11-02 00:00:00issue
11issn
1999-4915pii
v12111251journal_volume
12pub_type
杂志文章相关文献
Viruses-Basel文献大全abstract::Enteroviruses are a group of over 250 naked icosahedral virus serotypes that have been associated with clinical conditions that range from intrauterine enterovirus transmission withfataloutcome through encephalitis and meningitis, to paralysis. Classically, enterovirus detection was done by assaying for the developmen...
journal_title:Viruses
pub_type: 杂志文章,评审
doi:10.3390/v8010018
更新日期:2016-01-12 00:00:00
abstract::The development of oncolytic viruses has led to an emerging new class of cancer therapeutics. Although the safety profile has been encouraging, the transition of oncolytic viruses to the clinical setting has been a slow process due to modifications. Therefore, a new generation of more potent oncolytic viruses needs to...
journal_title:Viruses
pub_type: 杂志文章,评审
doi:10.3390/v8030072
更新日期:2016-03-07 00:00:00
abstract::Respiratory viruses cause disease in humans characterized by an abrupt onset of symptoms. Studies in humans and animal models have shown that symptoms are not immediate and appear days or even weeks after infection. Since the initial symptoms are a manifestation of virus recognition by elements of the innate immune re...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v2112541
更新日期:2010-11-01 00:00:00
abstract::Mycoviruses appear to be widespread in Fusarium species worldwide. The aim of this work was to identify mycoviral infections in Fusarium spp., isolated from maize and sorghum grown in Argentina, and to estimate their potential effects on the pathogenicity and toxigenesis of the host fungus towards maize. Mycoviruses w...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v12101161
更新日期:2020-10-14 00:00:00
abstract::During infection, Citrus tristeza virus (CTV) produces a non-coding subgenomic RNA referred to as low-molecular-weight tristeza 1 (LMT1), which for a long time has been considered as a by-product of the complex CTV replication machinery. In this study, we investigated the role of LMT1 in the virus infection cycle usin...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v11050436
更新日期:2019-05-14 00:00:00
abstract::Bovine viral diarrhea virus (BVDV) is a globally-distributed agent responsible for numerous clinical syndromes that lead to major economic losses. Two species, BVDV-1 and BVDV-2, discriminated on the basis of genetic and antigenic differences, are classified in the genus Pestivirus within the Flaviviridae family and d...
journal_title:Viruses
pub_type: 杂志文章,评审
doi:10.3390/v9060128
更新日期:2017-05-26 00:00:00
abstract::Potato virus Y (PVY) is the most economically important virus infecting cultivated potato (Solanum tuberosum L.). Accurate diagnosis is crucial to regulate the trade of tubers and for the sanitary selection of plant material for propagation. However, high genetic diversity of PVY represents a challenge for the detecti...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v12040478
更新日期:2020-04-23 00:00:00
abstract::Non-human primates (NHP) are the only animal model suitable to evaluate the protection efficacy of HIV-1 vaccines. It is important to understand how and when neutralizing antibodies (nAbs) with specificities similar to those of human broadly neutralizing antibodies (bnAbs) develop in NHPs. To address these questions, ...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v12020163
更新日期:2020-01-31 00:00:00
abstract::Due to the emergence of non-endemic mosquito vectors and the recent outbreaks of mosquito-borne diseases, mosquito-borne pathogens are considered an increasing risk to public and animal health in Europe. To obtain a status quo regarding mosquito-borne viruses and their vectors in Germany, 97,648 mosquitoes collected f...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v10070389
更新日期:2018-07-23 00:00:00
abstract::The virion proteins of Kaposi sarcoma-associated herpesvirus (KSHV) were initially characterized in 2005 in two separate studies that combined the detection of 24 viral proteins and a few cellular components via LC-MS/MS or MALDI-TOF. Despite considerable advances in the sensitivity and specificity of mass spectrometr...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v12121382
更新日期:2020-12-02 00:00:00
abstract::Viral CD8 T-cell epitopes, represented by viral peptides bound to major histocompatibility complex class-I (MHC-I) glycoproteins, are often identified by "reverse immunology", a strategy not requiring biochemical and structural knowledge of the actual viral protein from which they are derived by antigen processing. In...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v6020808
更新日期:2014-02-14 00:00:00
abstract::Retroviruses integrate a reverse transcribed double stranded DNA copy of their viral genome into the chromosomal DNA of cells they infect. Occasionally, exogenous retroviruses infect germ cells and when this happens a profound shift in the virus host dynamic occurs. Retroviruses maintained as hereditable viral genetic...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v3060901
更新日期:2011-06-01 00:00:00
abstract::The Filoviridae family of viruses, which includes the genera Ebolavirus (EBOV) and Marburgvirus (MARV), causes severe and often times lethal hemorrhagic fever in humans. Filoviral infections are associated with ineffective innate antiviral responses as a result of virally encoded immune antagonists, which render the h...
journal_title:Viruses
pub_type: 杂志文章,评审
doi:10.3390/v3091634
更新日期:2011-09-01 00:00:00
abstract::Influenza A virus (IAV) has caused seasonal influenza epidemics and influenza pandemics, which resulted in serious threat to public health and socioeconomic impacts. Until now, only 5 drugs belong to two categories are used for prophylaxis and treatment of IAV infection. Hemagglutinin (HA), the envelope glycoprotein o...
journal_title:Viruses
pub_type: 杂志文章,评审
doi:10.3390/v5010352
更新日期:2013-01-22 00:00:00
abstract::Viroids are small non-capsidated non-coding RNA replicons that utilize host factors for efficient propagation and spread through the entire plant. They can incite specific disease symptoms in susceptible plants. To better understand viroid-plant interactions, we employed microarray analysis to observe the changes of g...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v10050257
更新日期:2018-05-15 00:00:00
abstract::BST-2 or tetherin is a host cell restriction factor that prevents the budding of enveloped viruses at the cell surface, thus impairing the viral spread. Several countermeasures to evade this antiviral factor have been positively selected in retroviruses: the human immunodeficiency virus type 2 (HIV-2) relies on the en...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v8100285
更新日期:2016-10-14 00:00:00
abstract::MicroRNAs (miRNAs) are non-coding but functional RNA molecules of 21-25 nucleotides in length. MiRNAs play significant regulatory roles in diverse plant biological processes. In order to decipher the relationship between nbe-miR1919c-5p and the accumulations of tobacco curly shoot virus (TbCSV) and its betasatellite (...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v12040392
更新日期:2020-04-01 00:00:00
abstract::Begomoviruses are one of the major groups of plant viruses with an important economic impact on crop production in tropical and subtropical regions. The global spread of its polyphagous vector, the whitefly Bemisia tabaci, has contributed to the emergence and diversification of species within this genus. In this study...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v11040327
更新日期:2019-04-04 00:00:00
abstract::Current measles vaccines suffer from poor effectiveness in young infants due primarily to the inhibitory effect of residual maternal immunity on vaccine responses. The development of a measles vaccine that resists such passive immunity would strongly contribute to the stalled effort toward measles eradication. In this...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v9100265
更新日期:2017-09-21 00:00:00
abstract::Herpes simplex virus type 1 (HSV-1) causes a lifelong latent infection with an estimated global prevalence of 66%. Primary and recurrent HSV infections are characterized by a tingling sensation, followed by an eruption of vesicles, which can cause painful erosions. Commonly used antiviral drugs against HSV infection a...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v13010086
更新日期:2021-01-09 00:00:00
abstract::There is an epidemic of obesity starting about 1980 in both developed and undeveloped countries definitely associated with multiple etiologies. About 670 million people worldwide are obese. The incidence of obesity has increased in all age groups, including children. Obesity causes numerous diseases and the interactio...
journal_title:Viruses
pub_type: 杂志文章,评审
doi:10.3390/v7072787
更新日期:2015-07-08 00:00:00
abstract::Zika virus (ZIKV) is an emerging mosquito-borne pathogen associated with microcephaly and other congenital abnormalities in newborns as well as neurologic complications in adults. The explosive transmission of the virus in the last ten years put it in the limelight and improved our understanding of its biology and pat...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v12090926
更新日期:2020-08-23 00:00:00
abstract::Heart and skeletal muscle inflammation (HSMI) in farmed Atlantic salmon (Salmo salar) was first diagnosed in Norway in 1999. The disease is caused by Piscine orthoreovirus-1 (PRV-1). The virus is prevalent in farmed Atlantic salmon, but not always associated with disease. Phylogeny and sequence analyses of 31 PRV-1 ge...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v11050465
更新日期:2019-05-22 00:00:00
abstract::RNA secondary structures play diverse roles in positive-sense (+) RNA virus infections, but those located with the replication protein coding sequence can be difficult to investigate. Structures that regulate the translation of replication proteins pose particular challenges, as their potential involvement in post-tra...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v12030350
更新日期:2020-03-22 00:00:00
abstract::Bovine rotavirus A (RVA), a major causative pathogen of diarrhea in dairy and Japanese beef calves, has led to severe economic losses in numerous countries. A dual genotyping system based on genomic segments encoding VP7 (G genotype) and VP4 (P genotype), comprising the outer layer of the virion, has been used to unde...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v12121386
更新日期:2020-12-03 00:00:00
abstract::Viroids are small pathogenic circular single-stranded RNAs, present in two complementary sequences, named plus and minus, in infected plant cells. A high degree of complementarities between different regions of the RNAs allows them to adopt complex structures. Since viroids are naked non-coding RNAs, interactions with...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v6020489
更新日期:2014-01-29 00:00:00
abstract::Human immunodeficiency virus type 1 (HIV-1) establishes latency in resting memory CD4+ T cells and cells of myeloid lineage. In contrast to the T cells, cells of myeloid lineage are resistant to the HIV-1 induced cytopathic effect. Cells of myeloid lineage including macrophages are present in anatomical sanctuaries ma...
journal_title:Viruses
pub_type: 杂志文章,评审
doi:10.3390/v7041578
更新日期:2015-03-31 00:00:00
abstract::Various methods exist to detect an astrovirus infection. Current methods include electron microscopy (EM), cell culture, immunoassays, polymerase chain reaction (PCR) and various other molecular approaches that can be applied in the context of diagnostic or in surveillance studies. With the advent of metagenomics, nov...
journal_title:Viruses
pub_type: 杂志文章,评审
doi:10.3390/v9010010
更新日期:2017-01-12 00:00:00
abstract::Mutations are incorporated into the genomes of RNA viruses at an optimal frequency and altering this precise frequency has been proposed as a strategy to create live-attenuated vaccines. However, determining the effect of specific mutations that alter fidelity has been difficult because of the rapid selection of the v...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v12050546
更新日期:2020-05-15 00:00:00
abstract::Most cases of hemorrhagic fever with renal syndrome (HFRS) in Europe are caused by the Puumala hantavirus (PUUV). Typical features of the disease are increased vascular permeability, acute kidney injury (AKI), and thrombocytopenia. YKL-40 is an inflammatory glycoprotein involved in various forms of acute and chronic i...
journal_title:Viruses
pub_type: 杂志文章
doi:10.3390/v11090767
更新日期:2019-08-21 00:00:00