Onset of persistent pseudomonas aeruginosa infection in children with cystic fibrosis with interval censored data.

Abstract:

BACKGROUND:Persistent Pseudomonas aeruginosa (PPA) infection promotes lung function deterioration in children with cystic fibrosis (CF). Although early CF diagnosis through newborn screening (NBS) has been shown to provide nutritional/growth benefit, it is unclear whether NBS lowers the risk of PPA infection and how the effect of NBS vary with age. Modeling the onset age of PPA infection is challenging because 1) the onset age of PPA infection is interval censored in patient registry data; and 2) some risk factors such as NBS may have time-varying effects. METHODS:This problem fits into the framework of a recently developed Bayesian dynamic Cox model for interval censored data, where each regression coefficient is allowed to be time-varying to an extent determined by the data. RESULTS:Application of the methodology to data from the CF Foundation Patient Registry revealed interesting findings. Compared with patients with meconium ileus or diagnosed through signs or symptoms, patients diagnosed through NBS had significantly lower risks of acquiring PPA infection between age 1 and 2 years, and the benefit in survival rate was found to last up to age 4 years. Two cohorts of five years apart were compared. Patients born in cohort 2003-2004 had significantly lower risks of the PPA infections at any age up to 4 years than those born in 1998-1999. CONCLUSIONS:The study supports benefits of NBS on PPA infection in early childhood. In addition, our analyses demonstrate that patients in the more recent cohort had significantly lower risks of acquiring PPA infection up to age 4 years, which suggests improved CF treatment and care over time.

journal_name

BMC Med Res Methodol

authors

Wang W,Chen MH,Chiou SH,Lai HC,Wang X,Yan J,Zhang Z

doi

10.1186/s12874-016-0220-5

subject

Has Abstract

pub_date

2016-09-17 00:00:00

pages

122

issue

1

issn

1471-2288

pii

10.1186/s12874-016-0220-5

journal_volume

16

pub_type

杂志文章
  • Self-reported measures in health research for people with intellectual disabilities: an inclusive pilot study on suitability and reliability.

    abstract:BACKGROUND:The lack of suitable and reliable scales to measure self-reported health and health behaviour among people with intellectual disabilities (ID) is an important methodological challenge in health research. This study, which was undertaken together with co-researchers with ID, explores possibilities for self-re...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-018-0539-1

    authors: Vlot-van Anrooij K,Tobi H,Hilgenkamp TIM,Leusink GL,Naaldenberg J

    更新日期:2018-07-16 00:00:00

  • Health Equity Assessment Toolkit (HEAT): software for exploring and comparing health inequalities in countries.

    abstract:BACKGROUND:It is widely recognised that the pursuit of sustainable development cannot be accomplished without addressing inequality, or observed differences between subgroups of a population. Monitoring health inequalities allows for the identification of health topics where major group differences exist, dimensions of...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-016-0229-9

    authors: Hosseinpoor AR,Nambiar D,Schlotheuber A,Reidpath D,Ross Z

    更新日期:2016-10-19 00:00:00

  • A methodological systematic review of what's wrong with meta-ethnography reporting.

    abstract:BACKGROUND:Syntheses of qualitative studies can inform health policy, services and our understanding of patient experience. Meta-ethnography is a systematic seven-phase interpretive qualitative synthesis approach well-suited to producing new theories and conceptual models. However, there are concerns about the quality ...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章,评审

    doi:10.1186/1471-2288-14-119

    authors: France EF,Ring N,Thomas R,Noyes J,Maxwell M,Jepson R

    更新日期:2014-11-19 00:00:00

  • Study protocol: the empirical investigation of methods to correct for measurement error in biobanks with dietary assessment.

    abstract:BACKGROUND:The Public Population Project in Genomics (P3G) is an organisation that aims to promote collaboration between researchers in the field of population-based genomics. The main objectives of P3G are to encourage collaboration between researchers and biobankers, optimize study design, promote the harmonization o...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-11-135

    authors: Bennett DA,Little J,Masson LF,Minelli C

    更新日期:2011-10-05 00:00:00

  • Evaluating treatments in health care: the instability of a one-legged stool.

    abstract:BACKGROUND:Both scientists and the public routinely refer to randomized controlled trials (RCTs) as being the 'gold standard' of scientific evidence. Although there is no question that placebo-controlled RCTs play a significant role in the evaluation of new pharmaceutical treatments, especially when it is important to ...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-11-65

    authors: Kaplan BJ,Giesbrecht G,Shannon S,McLeod K

    更新日期:2011-05-11 00:00:00

  • Reference effect measures for quantifying, comparing and visualizing variation from random and fixed effects in non-normal multilevel models, with applications to site variation in medical procedure use and outcomes.

    abstract:BACKGROUND:Multilevel models for non-normal outcomes are widely used in medical and health sciences research. While methods for interpreting fixed effects are well-developed, methods to quantify and interpret random cluster variation and compare it with other sources of variation are less established. Random cluster va...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-018-0517-7

    authors: Glorioso TJ,Grunwald GK,Ho PM,Maddox TM

    更新日期:2018-07-06 00:00:00

  • Forecasts of COPD mortality in Australia: 2006-2025.

    abstract:BACKGROUND:Chronic Obstructive Pulmonary Disease (COPD) is currently the fifth leading cause of death in Australia, and there are marked differences in mortality trends between men and women. In this study, we have sought to model and forecast age related changes in COPD mortality over time for men and women separately...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-12-17

    authors: Erbas B,Ullah S,Hyndman RJ,Scollo M,Abramson M

    更新日期:2012-02-21 00:00:00

  • Correction for retest effects across repeated measures of cognitive functioning: a longitudinal cohort study of postoperative delirium.

    abstract:BACKGROUND:Few studies have compared methods to correct for retest effects or practice effects in settings where an acute event could influence test performance, such as major surgery. Our goal in this study was to evaluate the use of different methods to correct for the effects of practice or retest on repeated test a...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-018-0530-x

    authors: Racine AM,Gou Y,Fong TG,Marcantonio ER,Schmitt EM,Travison TG,Inouye SK,Jones RN

    更新日期:2018-07-03 00:00:00

  • Comparing survival curves based on medians.

    abstract:BACKGROUND:Although some nonparametric methods have been proposed in the literature to test for the equality of median survival times for censored data in medical research, in general they have inflated type I error rates, which make their use limited in practice, especially when the sample sizes are small. METHODS:In...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-016-0133-3

    authors: Chen Z,Zhang G

    更新日期:2016-03-16 00:00:00

  • A random effects meta-analysis model with Box-Cox transformation.

    abstract:BACKGROUND:In a random effects meta-analysis model, true treatment effects for each study are routinely assumed to follow a normal distribution. However, normality is a restrictive assumption and the misspecification of the random effects distribution may result in a misleading estimate of overall mean for the treatmen...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-017-0376-7

    authors: Yamaguchi Y,Maruo K,Partlett C,Riley RD

    更新日期:2017-07-19 00:00:00

  • Measuring sidewalk distances using Google Earth.

    abstract:BACKGROUND:Physical activity is an important determinant of health. Walking is the most common physical activity performed by adults and the presence of sidewalks along roads is a determinant of walking. Geographic information systems (GIS) can be used to measure sidewalks; however, GIS sidewalk data are difficult to a...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-12-39

    authors: Janssen I,Rosu A

    更新日期:2012-03-29 00:00:00

  • Scratch lottery tickets are a poor incentive to respond to mailed questionnaires.

    abstract:BACKGROUND:It has been demonstrated that the enclosure of money with a mailed questionnaire increases the response rate significantly. We evaluated scratch lottery tickets as an alternative to cash. METHODS:1500 randomly selected Norwegians between the ages of 40 and 65 years were sent a short questionnaire. 250 recei...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章,随机对照试验

    doi:10.1186/1471-2288-6-19

    authors: Finsen V,Storeheier AH

    更新日期:2006-04-28 00:00:00

  • Estimating required information size by quantifying diversity in random-effects model meta-analyses.

    abstract:BACKGROUND:There is increasing awareness that meta-analyses require a sufficiently large information size to detect or reject an anticipated intervention effect. The required information size in a meta-analysis may be calculated from an anticipated a priori intervention effect or from an intervention effect suggested b...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-9-86

    authors: Wetterslev J,Thorlund K,Brok J,Gluud C

    更新日期:2009-12-30 00:00:00

  • Integrating and extending cohort studies: lessons from the eXtending Treatments, Education and Networks in Depression (xTEND) study.

    abstract:BACKGROUND:Epidemiologic studies often struggle to adequately represent populations and outcomes of interest. Differences in methodology, data analysis and research questions often mean that reviews and synthesis of the existing literature have significant limitations. The current paper details our experiences in combi...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-13-122

    authors: Allen J,Inder KJ,Lewin TJ,Attia JR,Kay-Lambkin FJ,Baker AL,Hazell T,Kelly BJ

    更新日期:2013-10-05 00:00:00

  • Workplace restructurings in intervention studies - a challenge for design, analysis and interpretation.

    abstract:BACKGROUND:Interventions in occupational health often target worksites rather than individuals. The objective of this paper is to describe the (lack of) stability in units of analysis in occupational health and safety intervention projects directed toward worksites. METHODS:A case study approach is used to describe na...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-8-39

    authors: Olsen O,Albertsen K,Nielsen ML,Poulsen KB,Gron SM,Brunnberg HL

    更新日期:2008-06-13 00:00:00

  • Dichotomisation using a distributional approach when the outcome is skewed.

    abstract:BACKGROUND:Dichotomisation of continuous outcomes has been rightly criticised by statisticians because of the loss of information incurred. However to communicate a comparison of risks, dichotomised outcomes may be necessary. Peacock et al. developed a distributional approach to the dichotomisation of normally distribu...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-015-0028-8

    authors: Sauzet O,Ofuya M,Peacock JL

    更新日期:2015-04-24 00:00:00

  • Interpreter proxy versus healthcare interpreter for administration of patient surveys following arthroplasty: a pilot study.

    abstract:BACKGROUND:Clinical quality registries and other systems that conduct routine post-discharge surveillance of patient outcomes following surgery may have difficulty surveying patients who have limited proficiency in the language of the healthcare provider. Interpreter proxies (family and carers) are often used due to li...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-019-0854-1

    authors: Xue D,Churches T,Armstrong E,Mittal R,Naylor JM,Harris IA

    更新日期:2019-11-14 00:00:00

  • Error in statistical tests of error in statistical tests.

    abstract:BACKGROUND:A recent paper found that terminal digits of statistical values in Nature deviated significantly from an equiprobable distribution, indicating errors or inconsistencies in rounding. This finding, as well as the discovery that a large percentage of p values were inconsistent with reported test statistics, led...

    journal_title:BMC medical research methodology

    pub_type: 评论,杂志文章

    doi:10.1186/1471-2288-6-45

    authors: Jeng M

    更新日期:2006-09-13 00:00:00

  • Impact of preconception enrollment on birth enrollment and timing of exposure assessment in the initial vanguard cohort of the U.S. National Children's Study.

    abstract:BACKGROUND:The initial vanguard cohort of the U.S. National Children's Study was a pregnancy and birth cohort study that sought to enroll some women prior to pregnancy, and to assess exposures early in pregnancy. METHODS:During the recruitment phase (2009-2010), geographically based sampling was used to recruit women ...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-015-0067-1

    authors: Stanford JB,Brenner R,Fetterer D,Palmer L,Schoendorf KC,U.S. National Children’s Study.

    更新日期:2015-09-24 00:00:00

  • Incomplete evidence: the inadequacy of databases in tracing published adverse drug reactions in clinical trials.

    abstract:BACKGROUND:We would expect information on adverse drug reactions in randomised clinical trials to be easily retrievable from specific searches of electronic databases. However, complete retrieval of such information may not be straightforward, for two reasons. First, not all clinical drug trials provide data on the fre...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-1-7

    authors: Derry S,Loke YK,Aronson JK

    更新日期:2001-01-01 00:00:00

  • Comparison of retention in observational cohorts and nested simulated HIV vaccine efficacy trials in the key populations in Uganda.

    abstract:BACKGROUND:Outcomes in observational studies may not best estimate those expected in the HIV vaccine efficacy trials. We compared retention in Simulated HIV Vaccine Efficacy Trials (SiVETs) and observational cohorts drawn from two key populations in Uganda. METHODS:Two SiVETs were nested within two observational cohor...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-020-00920-4

    authors: Abaasa A,Todd J,Nash S,Mayanja Y,Kaleebu P,Fast PE,Price M

    更新日期:2020-02-12 00:00:00

  • Structural issues affecting mixed methods studies in health research: a qualitative study.

    abstract:BACKGROUND:Health researchers undertake studies which combine qualitative and quantitative methods. Little attention has been paid to the structural issues affecting this mixed methods approach. We explored the facilitators and barriers to undertaking mixed methods studies in health research. METHODS:Face-to-face semi...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-9-82

    authors: O'Cathain A,Nicholl J,Murphy E

    更新日期:2009-12-09 00:00:00

  • Resuming the discussion of AMSTAR: What can (should) be made better?

    abstract:BACKGROUND:Evidence syntheses, and in particular systematic reviews (SRs), have become one of the cornerstones of evidence-based health care. The Assessment of Multiple Systematic Reviews (AMSTAR) tool has become the most widely used tool for investigating the methodological quality of SRs and is currently undergoing r...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-016-0183-6

    authors: Wegewitz U,Weikert B,Fishta A,Jacobs A,Pieper D

    更新日期:2016-08-26 00:00:00

  • Reliability, validity and administrative burden of the community reintegration of injured service members computer adaptive test (CRIS-CAT)".

    abstract:BACKGROUND:The Computer Adaptive Test version of the Community Reintegration of Injured Service Members measure (CRIS-CAT) consists of three scales measuring Extent of, Perceived Limitations in, and Satisfaction with community integration. The CRIS-CAT was developed using item response theory methods. The purposes of t...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-12-145

    authors: Resnik L,Borgia M,Ni P,Pirraglia PA,Jette A

    更新日期:2012-09-17 00:00:00

  • Applying an intersectionality lens to the theoretical domains framework: a tool for thinking about how intersecting social identities and structures of power influence behaviour.

    abstract:BACKGROUND:A key component of the implementation process is identifying potential barriers and facilitators that need to be addressed. The Theoretical Domains Framework (TDF) is one of the most commonly used frameworks for this purpose. When applying the TDF, it is critical to understand the context in which behaviours...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-020-01056-1

    authors: Etherington N,Rodrigues IB,Giangregorio L,Graham ID,Hoens AM,Kasperavicius D,Kelly C,Moore JE,Ponzano M,Presseau J,Sibley KM,Straus S

    更新日期:2020-06-26 00:00:00

  • Social media as a recruitment platform for a nationwide online survey of COVID-19 knowledge, beliefs, and practices in the United States: methodology and feasibility analysis.

    abstract:BACKGROUND:The COVID-19 pandemic has evolved into one of the most impactful health crises in modern history, compelling researchers to explore innovative ways to efficiently collect public health data in a timely manner. Social media platforms have been explored as a research recruitment tool in other settings; however...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-020-01011-0

    authors: Ali SH,Foreman J,Capasso A,Jones AM,Tozan Y,DiClemente RJ

    更新日期:2020-05-13 00:00:00

  • Obstacles to recruitment in paediatric studies focusing on mental health in a physical health context: the experiences of clinical gatekeepers in an observational cohort study.

    abstract:BACKGROUND:Studies in both paediatric and psychiatric settings often experience problems in recruitment. This can compromise the ability of the study to recruit to target, meaning studies are potentially underpowered. It can also result in a biased sample if a non-representative group are selectively recruited. Recruit...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-019-0730-z

    authors: Loades ME,Smith L,Higson-Sweeney N,Beasant L,Stallard P,Kessler D,Crawley E

    更新日期:2019-04-27 00:00:00

  • Overview of systematic reviews of therapeutic ranges: methodologies and recommendations for practice.

    abstract:BACKGROUND:Many medicines are dosed to achieve a particular therapeutic range, and monitored using therapeutic drug monitoring (TDM). The evidence base for a therapeutic range can be evaluated using systematic reviews, to ensure it continues to reflect current indications, doses, routes and formulations, as well as upd...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章,评审

    doi:10.1186/s12874-017-0363-z

    authors: Cooney L,Loke YK,Golder S,Kirkham J,Jorgensen A,Sinha I,Hawcutt D

    更新日期:2017-06-02 00:00:00

  • Methods to increase response rates to a population-based maternity survey: a comparison of two pilot studies.

    abstract:BACKGROUND:Surveys are established methods for collecting population data that are unavailable from other sources; however, response rates to surveys are declining. A number of methods have been identified to increase survey returns yet response rates remain low. This paper evaluates the impact of five selected methods...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-019-0702-3

    authors: Harrison S,Henderson J,Alderdice F,Quigley MA

    更新日期:2019-03-20 00:00:00

  • Misclassification of incident conditions using claims data: impact of varying the period used to exclude pre-existing disease.

    abstract:BACKGROUND:Estimating the incidence of medical conditions using claims data often requires constructing a prevalence period that predates an event of interest, for instance the diagnosis of cancer, to exclude those with pre-existing conditions from the incidence risk set. Those conditions missed during the prevalence p...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-13-32

    authors: Griffiths RI,O'Malley CD,Herbert RJ,Danese MD

    更新日期:2013-03-06 00:00:00