Simulation-based estimation of mean and standard deviation for meta-analysis via Approximate Bayesian Computation (ABC).

Abstract:

BACKGROUND:When conducting a meta-analysis of a continuous outcome, estimated means and standard deviations from the selected studies are required in order to obtain an overall estimate of the mean effect and its confidence interval. If these quantities are not directly reported in the publications, they must be estimated from other reported summary statistics, such as the median, the minimum, the maximum, and quartiles. METHODS:We propose a simulation-based estimation approach using the Approximate Bayesian Computation (ABC) technique for estimating mean and standard deviation based on various sets of summary statistics found in published studies. We conduct a simulation study to compare the proposed ABC method with the existing methods of Hozo et al. (2005), Bland (2015), and Wan et al. (2014). RESULTS:In the estimation of the standard deviation, our ABC method performs better than the other methods when data are generated from skewed or heavy-tailed distributions. The corresponding average relative error (ARE) approaches zero as sample size increases. In data generated from the normal distribution, our ABC performs well. However, the Wan et al. method is best for estimating standard deviation under normal distribution. In the estimation of the mean, our ABC method is best regardless of assumed distribution. CONCLUSION:ABC is a flexible method for estimating the study-specific mean and standard deviation for meta-analysis, especially with underlying skewed or heavy-tailed distributions. The ABC method can be applied using other reported summary statistics such as the posterior mean and 95 % credible interval when Bayesian analysis has been employed.

journal_name

BMC Med Res Methodol

authors

Kwon D,Reis IM

doi

10.1186/s12874-015-0055-5

subject

Has Abstract

pub_date

2015-08-12 00:00:00

pages

61

issn

1471-2288

pii

10.1186/s12874-015-0055-5

journal_volume

15

pub_type

杂志文章
  • Bayesian methods in clinical trials: a Bayesian analysis of ECOG trials E1684 and E1690.

    abstract:BACKGROUND:E1684 was the pivotal adjuvant melanoma trial for establishment of high-dose interferon (IFN) as effective therapy of high-risk melanoma patients. E1690 was an intriguing effort to corroborate E1684, and the differences between the outcomes of these trials have embroiled the field in controversy over the pas...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-12-183

    authors: Ibrahim JG,Chen MH,Chu H

    更新日期:2012-11-29 00:00:00

  • Effectiveness of motivational interviewing, health education and brief advice in a population of smokers who are not ready to quit.

    abstract:BACKGROUND:Motivational Interviewing (MI), Brief Advice (BA) and Health Education (HE) are established smoking cessation induction methods for smokers with low desire to quit. Although randomized controlled trials (RCT's) have been frequently used to assess these interventions the temporal efficacy and effectiveness of...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章,随机对照试验

    doi:10.1186/s12874-018-0511-0

    authors: Bani-Yaghoub M,Elhomani A,Catley D

    更新日期:2018-06-13 00:00:00

  • Assembling and validating a heart failure-free cohort from the Reasons for Geographic and Racial Differences in Stroke (REGARDS) study.

    abstract:BACKGROUND:Studies examining incident heart failure (HF) have been limited to select populations. To examine incident HF with broader generalizability, there is need to assemble a HF-free cohort using a geographically-diverse sample. We aimed to develop and validate a simple medication-based strategy for assembling a H...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-019-0890-x

    authors: Goyal P,Mefford MT,Chen L,Sterling MR,Durant RW,Safford MM,Levitan EB

    更新日期:2020-03-04 00:00:00

  • Comparison of retention in observational cohorts and nested simulated HIV vaccine efficacy trials in the key populations in Uganda.

    abstract:BACKGROUND:Outcomes in observational studies may not best estimate those expected in the HIV vaccine efficacy trials. We compared retention in Simulated HIV Vaccine Efficacy Trials (SiVETs) and observational cohorts drawn from two key populations in Uganda. METHODS:Two SiVETs were nested within two observational cohor...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-020-00920-4

    authors: Abaasa A,Todd J,Nash S,Mayanja Y,Kaleebu P,Fast PE,Price M

    更新日期:2020-02-12 00:00:00

  • Implementation of clinical research trials using web-based and mobile devices: challenges and solutions.

    abstract:BACKGROUND:With the increasing implementation of web-based, mobile health interventions in clinical trials, it is crucial for researchers to address the security and privacy concerns of patient information according to high ethical standards. The full process of meeting these standards is often made more complicated du...

    journal_title:BMC medical research methodology

    pub_type: 社论

    doi:10.1186/s12874-017-0324-6

    authors: Eagleson R,Altamirano-Diaz L,McInnis A,Welisch E,De Jesus S,Prapavessis H,Rombeek M,Seabrook JA,Park T,Norozi K

    更新日期:2017-03-17 00:00:00

  • Estimation of colorectal adenoma recurrence with dependent censoring.

    abstract:BACKGROUND:Due to early colonoscopy for some participants, interval-censored observations can be introduced into the data of a colorectal polyp prevention trial. The censoring could be dependent of risk of recurrence if the reasons of having early colonoscopy are associated with recurrence. This can complicate estimati...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-9-66

    authors: Hsu CH,Long Q,Alberts DS

    更新日期:2009-09-29 00:00:00

  • Empirical study of correlated survival times for recurrent events with proportional hazards margins and the effect of correlation and censoring.

    abstract:BACKGROUND:In longitudinal studies where subjects experience recurrent incidents over a period of time, such as respiratory infections, fever or diarrhea, statistical methods are required to take into account the within-subject correlation. METHODS:For repeated events data with censored failure, the independent increm...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-13-95

    authors: Villegas R,Julià O,Ocaña J

    更新日期:2013-07-24 00:00:00

  • A probit- log- skew-normal mixture model for repeated measures data with excess zeros, with application to a cohort study of paediatric respiratory symptoms.

    abstract:BACKGROUND:A zero-inflated continuous outcome is characterized by occurrence of "excess" zeros that more than a single distribution can explain, with the positive observations forming a skewed distribution. Mixture models are employed for regression analysis of zero-inflated data. Moreover, for repeated measures zero-i...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-10-55

    authors: Mahmud S,Lou WW,Johnston NW

    更新日期:2010-06-14 00:00:00

  • Incorporating nonlinearity into mediation analyses.

    abstract:BACKGROUND:Mediation is an important issue considered in the behavioral, medical, and social sciences. It addresses situations where the effect of a predictor variable X on an outcome variable Y is explained to some extent by an intervening, mediator variable M. Methods for addressing mediation have been available for ...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-017-0296-6

    authors: Knafl GJ,Knafl KA,Grey M,Dixon J,Deatrick JA,Gallo AM

    更新日期:2017-03-21 00:00:00

  • Pan-Canadian assessment of pandemic immunization data collection: study methodology.

    abstract:BACKGROUND:The collection of individual-level pandemic (H1N1) 2009 influenza immunization data was considered important to facilitate optimal vaccine delivery and accurate assessment of vaccine coverage. These data are also critical for research aimed at evaluating the new vaccine's safety and effectiveness. Systems us...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-10-51

    authors: Pereira JA,Quach S,Heidebrecht C,Foisy J,Quan S,Finkelstein M,Sikora CA,Bettinger JA,Buckeridge DL,McCarthy A,Deeks S,Kwong JC,Public Health Agency of Canada\/Canadian Institutes of Health Research Influenza Research Network Vacc

    更新日期:2010-06-08 00:00:00

  • Obstacles to recruitment in paediatric studies focusing on mental health in a physical health context: the experiences of clinical gatekeepers in an observational cohort study.

    abstract:BACKGROUND:Studies in both paediatric and psychiatric settings often experience problems in recruitment. This can compromise the ability of the study to recruit to target, meaning studies are potentially underpowered. It can also result in a biased sample if a non-representative group are selectively recruited. Recruit...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-019-0730-z

    authors: Loades ME,Smith L,Higson-Sweeney N,Beasant L,Stallard P,Kessler D,Crawley E

    更新日期:2019-04-27 00:00:00

  • Measurement properties of the Danish version of the Awareness and Beliefs about Cancer (ABC) measure.

    abstract:BACKGROUND:The International Cancer Benchmarking Partnership aims to study international differences in cancer survival and the possible causes. Participating countries are Australia, Canada, Norway, Sweden, Denmark and the UK and a particular focus area is differences in awareness and beliefs about cancer. In this con...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-017-0352-2

    authors: Hvidberg L,Pedersen AF,Wulff CN,Carlsen AH,Vedsted P

    更新日期:2017-04-26 00:00:00

  • A random effects variance shift model for detecting and accommodating outliers in meta-analysis.

    abstract:BACKGROUND:Meta-analysis typically involves combining the estimates from independent studies in order to estimate a parameter of interest across a population of studies. However, outliers often occur even under the random effects model. The presence of such outliers could substantially alter the conclusions in a meta-a...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-11-19

    authors: Gumedze FN,Jackson D

    更新日期:2011-02-16 00:00:00

  • An accurate test for homogeneity of odds ratios based on Cochran's Q-statistic.

    abstract:BACKGROUND:A frequently used statistic for testing homogeneity in a meta-analysis of K independent studies is Cochran's Q. For a standard test of homogeneity the Q statistic is referred to a chi-square distribution with K-1 degrees of freedom. For the situation in which the effects of the studies are logarithms of odds...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-015-0034-x

    authors: Kulinskaya E,Dollinger MB

    更新日期:2015-06-10 00:00:00

  • Random allocation software for parallel group randomized trials.

    abstract:BACKGROUND:Typically, randomization software should allow users to exert control over the different aspects of randomization including block design, provision of unique identifiers and control over the format and type of program output. While some of these characteristics have been addressed by available software, none...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-4-26

    authors: Saghaei M

    更新日期:2004-11-09 00:00:00

  • Heterogeneity and event dependence in the analysis of sickness absence.

    abstract:BACKGROUND:Sickness absence (SA) is an important social, economic and public health issue. Identifying and understanding the determinants, whether biological, regulatory or, health services-related, of variability in SA duration is essential for better management of SA. The conditional frailty model (CFM) is useful whe...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-13-114

    authors: Torá-Rocamora I,Gimeno D,Delclos G,Benavides FG,Manzanera R,Jardí J,Alberti C,Yasui Y,Martínez JM

    更新日期:2013-09-16 00:00:00

  • Does the association between adherence to statin medications and mortality depend on measurement approach? A retrospective cohort study.

    abstract:BACKGROUND:The aim of this study was to examine the relationship between mortality and statin adherence using two different approaches to adherence measurement (summary versus repeated-measures). METHODS:A retrospective cohort study was conducted using administrative data from Saskatchewan, Canada between 1994 and 200...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-017-0339-z

    authors: Alsabbagh MW,Eurich D,Lix LM,Wilson TW,Blackburn DF

    更新日期:2017-04-20 00:00:00

  • A review of the reporting and handling of missing data in cohort studies with repeated assessment of exposure measures.

    abstract:BACKGROUND:Retaining participants in cohort studies with multiple follow-up waves is difficult. Commonly, researchers are faced with the problem of missing data, which may introduce biased results as well as a loss of statistical power and precision. The STROBE guidelines von Elm et al. (Lancet, 370:1453-1457, 2007); V...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章,评审

    doi:10.1186/1471-2288-12-96

    authors: Karahalios A,Baglietto L,Carlin JB,English DR,Simpson JA

    更新日期:2012-07-11 00:00:00

  • Comparing denominator degrees of freedom approximations for the generalized linear mixed model in analyzing binary outcome in small sample cluster-randomized trials.

    abstract:BACKGROUND:Small number of clusters and large variation of cluster sizes commonly exist in cluster-randomized trials (CRTs) and are often the critical factors affecting the validity and efficiency of statistical analyses. F tests are commonly used in the generalized linear mixed model (GLMM) to test intervention effect...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-015-0026-x

    authors: Li P,Redden DT

    更新日期:2015-04-23 00:00:00

  • The role of the clinical research coordinator--data manager--in oncology clinical trials.

    abstract:BACKGROUND:The purpose of this study was to determine the standard tasks performed by clinical research coordinators (CRCs) in oncology clinical trials. METHODS:Forty-one CRCs were anonymously surveyed, using a four-page self-administered questionnaire focused on demographics, qualifications, and professional experien...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-4-6

    authors: Rico-Villademoros F,Hernando T,Sanz JL,López-Alonso A,Salamanca O,Camps C,Rosell R

    更新日期:2004-03-25 00:00:00

  • Longitudinal studies that use data collected as part of usual care risk reporting biased results: a systematic review.

    abstract:BACKGROUND:Longitudinal studies using data collected as part of usual care risk providing biased results if visit times are related to the outcome of interest. Statistical methods for mitigating this bias are available but rarely used. This lack of use could be attributed to a lack of need or to a lack of awareness of ...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章,评审

    doi:10.1186/s12874-017-0418-1

    authors: Farzanfar D,Abumuamar A,Kim J,Sirotich E,Wang Y,Pullenayegum E

    更新日期:2017-09-06 00:00:00

  • New journal selection for quantitative survey of infectious disease research: application for Asian trend analysis.

    abstract:BACKGROUND:Quantitative survey of research articles, as an application of bibliometrics, is an effective tool for grasping overall trends in various medical research fields. This type of survey has been also applied to infectious disease research; however, previous studies were insufficient as they underestimated artic...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-9-67

    authors: Takahashi-Omoe H,Omoe K,Okabe N

    更新日期:2009-10-06 00:00:00

  • Protocol for a systematic review and individual patient data meta-analysis of prognostic factors of foot ulceration in people with diabetes: the international research collaboration for the prediction of diabetic foot ulcerations (PODUS).

    abstract:BACKGROUND:Diabetes-related lower limb amputations are associated with considerable morbidity and mortality and are usually preceded by foot ulceration. The available systematic reviews of aggregate data are compromised because the primary studies report both adjusted and unadjusted estimates. As adjusted meta-analyses...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章,meta分析

    doi:10.1186/1471-2288-13-22

    authors: Crawford F,Anandan C,Chappell FM,Murray GD,Price JF,Sheikh A,Simpson CR,Maxwell M,Stansby GP,Young MJ,Abbott CA,Boulton AJ,Boyko EJ,Kastenbauer T,Leese GP,Monami M,Monteiro-Soares M,Rith-Najarian SJ,Veves A,Coates N

    更新日期:2013-02-15 00:00:00

  • Does updating improve the methodological and reporting quality of systematic reviews?

    abstract:BACKGROUND:Systematic reviews (SRs) must be of high quality. The purpose of our research was to compare the methodological and reporting quality of original versus updated Cochrane SRs to determine whether updating had improved these two quality dimensions. METHODS:We identified updated Cochrane SRs published in issue...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-6-27

    authors: Shea B,Boers M,Grimshaw JM,Hamel C,Bouter LM

    更新日期:2006-06-13 00:00:00

  • Incomplete evidence: the inadequacy of databases in tracing published adverse drug reactions in clinical trials.

    abstract:BACKGROUND:We would expect information on adverse drug reactions in randomised clinical trials to be easily retrievable from specific searches of electronic databases. However, complete retrieval of such information may not be straightforward, for two reasons. First, not all clinical drug trials provide data on the fre...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-1-7

    authors: Derry S,Loke YK,Aronson JK

    更新日期:2001-01-01 00:00:00

  • The search for stable prognostic models in multiple imputed data sets.

    abstract:BACKGROUND:In prognostic studies model instability and missing data can be troubling factors. Proposed methods for handling these situations are bootstrapping (B) and Multiple imputation (MI). The authors examined the influence of these methods on model composition. METHODS:Models were constructed using a cohort of 58...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-10-81

    authors: Vergouw D,Heymans MW,Peat GM,Kuijpers T,Croft PR,de Vet HC,van der Horst HE,van der Windt DA

    更新日期:2010-09-17 00:00:00

  • Does the provision of a DVD-based audio-visual presentation improve recruitment in a clinical trial? A randomised trial of DVD trial invitations.

    abstract:BACKGROUND:Recruitment to clinical trials can be challenging. Methods that improve the efficiency of trial recruitment are needed to increase successful study completions. The aim of this study was to ascertain whether sending an audio-visual presentation on a digital versatile disc (DVD), along with usual study invita...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章,多中心研究,随机对照试验

    doi:10.1186/s12874-019-0663-6

    authors: Rogers A,Flynn RWV,Mackenzie IS,MacDonald TM

    更新日期:2019-01-30 00:00:00

  • Determinants of non- response to a second assessment of lifestyle factors and body weight in the EPIC-PANACEA study.

    abstract:BACKGROUND:This paper discusses whether baseline demographic, socio-economic, health variables, length of follow-up and method of contacting the participants predict non-response to the invitation for a second assessment of lifestyle factors and body weight in the European multi-center EPIC-PANACEA study. METHODS:Over...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/1471-2288-12-148

    authors: May AM,Adema LE,Romaguera D,Vergnaud AC,Agudo A,Ekelund U,Steffen A,Orfanos P,Slimani N,Rinaldi S,Mouw T,Rohrmann S,Hermann S,Boeing H,Bergmann MM,Jakobsen MU,Overvad K,Wareham NJ,Gonzalez C,Tjonneland A,Halkjaer

    更新日期:2012-09-24 00:00:00

  • A multi-country comparison of stochastic models of breast cancer mortality with P-splines smoothing approach.

    abstract:BACKGROUND:Precise predictions of incidence and mortality rates due to breast cancer (BC) are required for planning of public health programs as well as for clinical services. A number of approaches has been established for prediction of mortality using stochastic models. The performance of these models intensely depen...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-020-01187-5

    authors: Mubarik S,Hu Y,Yu C

    更新日期:2020-12-09 00:00:00

  • Correction for retest effects across repeated measures of cognitive functioning: a longitudinal cohort study of postoperative delirium.

    abstract:BACKGROUND:Few studies have compared methods to correct for retest effects or practice effects in settings where an acute event could influence test performance, such as major surgery. Our goal in this study was to evaluate the use of different methods to correct for the effects of practice or retest on repeated test a...

    journal_title:BMC medical research methodology

    pub_type: 杂志文章

    doi:10.1186/s12874-018-0530-x

    authors: Racine AM,Gou Y,Fong TG,Marcantonio ER,Schmitt EM,Travison TG,Inouye SK,Jones RN

    更新日期:2018-07-03 00:00:00