Isolation of microsatellites from a bovine YAC clone harbouring the SOD1 gene.

Abstract:

:A bovine yeast artificial chromosome (YAC) clone containing the superoxide dismutase 1 (SOD1) gene was used as a template for polymerase chain reaction (PCR) amplification using a conserved short interspersed nuclear element (SINE) primer. Two highly polymorphic microsatellites with nine and eight alleles were isolated and mapped by linkage analysis to the centromeric region of BTA1. These microsatellites will be used in the construction of a genetic and physical map of the SOD1 region towards positional cloning of the polled gene.

journal_name

Anim Genet

journal_title

Animal genetics

authors

Band M,Eggen A,Bishop MD,Ron M

doi

10.1111/j.1365-2052.1997.00158.x

subject

Has Abstract

pub_date

1997-10-01 00:00:00

pages

363-6

issue

5

eissn

0268-9146

issn

1365-2052

journal_volume

28

pub_type

杂志文章
  • East African pigs have a complex Indian, Far Eastern and Western ancestry.

    abstract::In this study, we have characterized the mitochondrial diversity of 81 swine from Uganda. Median-joining network analysis of D-loop sequences from these individuals and others characterized in previous studies allowed us to determine that Ugandan pigs cluster with populations from the West (Europe/North Africa), Far E...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12305

    authors: Noce A,Amills M,Manunza A,Muwanika V,Muhangi D,Aliro T,Mayega J,Ademun R,Sànchez A,Egbhalsaied S,Mercadé A,Masembe C

    更新日期:2015-08-01 00:00:00

  • APOB-associated cholesterol deficiency in Holstein cattle is not a simple recessive disease.

    abstract::In 2015, cholesterol deficiency (CD) was reported for the first time as a new recessive defect in Holstein cattle. After GWAS mapping and identification of a disease-associated haplotype, a causative loss-of-function variant in APOB was identified. CD-clinically affected APOB homozygotes showed poor development, inter...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12801

    authors: Häfliger IM,Hofstetter S,Mock T,Stettler MH,Meylan M,Mehinagic K,Stokar-Regenscheit N,Drögemüller C

    更新日期:2019-08-01 00:00:00

  • Quantitative trait loci affecting eggshell traits in an F(2) population.

    abstract::Good eggshell quality is important for both table egg quality and chicken reproductive performance. Weak eggshells cause economic losses in all production steps. Poor eggshell quality also poses increased risk for Salmonella infections. Eggshell quality has been a difficult trait to improve by traditional breeding, as...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2010.02131.x

    authors: Tuiskula-Haavisto M,Honkatukia M,Preisinger R,Schmutz M,de Koning DJ,Wei WH,Vilkki J

    更新日期:2011-06-01 00:00:00

  • Joint report of the Third International Workshop on Lymphocyte Alloantigens of the Horse, Kennett Square, Pennsylvania, 25-27 April 1984.

    abstract::The Third International Workshop on Lymphocyte Alloantigens of the Horse was held on 25-27 April 1984 in Kennett Square, Pennsylvania. Twelve laboratories from five countries participated. The principal purpose of this Workshop was to determine the phenotypic and gene frequencies of the 10 equine lymphocyte antigens (...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1986.tb00730.x

    authors: Antczak DF,Bailey E,Barger B,Guerin G,Lazary S,McClure J,Mottironi VD,Symons R,Templeton J,Varewyck H

    更新日期:1986-01-01 00:00:00

  • Microsatellite DNA markers indicate three genetic lineages in East Asian indigenous goat populations.

    abstract::The genetic differentiation and phylogenetic relationships of 18 indigenous goat populations from seven East Asian countries were analysed based on data obtained from 26 microsatellite DNA markers. The mean number of alleles (MNA) per population ranged from 2.5 to 7.6, with an average of 5.8. Genetic variability estim...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2012.02334.x

    authors: Nomura K,Ishii K,Dadi H,Takahashi Y,Minezawa M,Cho CY,Sutopo,Faruque MO,Nyamsamba D,Amano T

    更新日期:2012-12-01 00:00:00

  • Genome-wide methylation study of diploid and triploid brown trout (Salmo trutta L.).

    abstract::The induction of triploidization in fish is a very common practice in aquaculture. Although triploidization has been applied successfully in many salmonid species, little is known about the epigenetic mechanisms implicated in the maintenance of the normal functions of the new polyploid genome. By means of methylation-...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12287

    authors: Covelo-Soto L,Leunda PM,Pérez-Figueroa A,Morán P

    更新日期:2015-06-01 00:00:00

  • Linkage of bilateral convergent strabismus with exophthalmus (BCSE) to BTA5 and BTA18 in German Brown cattle.

    abstract::Bilateral convergent strabismus with exophthalmus (BCSE) is a widespread inherited eye defect in several cattle populations. Its progressive condition often leads to blindness in affected cattle and decreases their usability. Furthermore, the German animal welfare laws prevent breeding with animals whose progeny are e...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2008.01771.x

    authors: Mömke S,Fink S,Wöhlke A,Drögemüller C,Distl O

    更新日期:2008-10-01 00:00:00

  • Mapping of expressed sequence tags from a porcine early embryonic cDNA library.

    abstract::The goal of this study was to identify and map genes expressed during the elongation phase of embryogenesis in swine. Expressed sequence tags were analysed from a previously described porcine cDNA library prepared from elongating swine embryos. Average insert length of randomly selected clones was approximately 600 bp...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1046/j.1365-2052.2001.00739.x

    authors: Smith TP,Fahrenkrug SC,Rohrer GA,Simmen FA,Rexroad CE,Keele JW

    更新日期:2001-04-01 00:00:00

  • Genetic analysis of seven Italian horse breeds based on mitochondrial DNA D-loop variation.

    abstract::To understand the origin and genetic diversity of Italian horses, mitochondrial DNA D-loop sequences were generated for 163 horses from seven breeds. Sequence analysis of a 480-bp segment revealed a total of 84 haplotypes with 57 polymorphic sites, indicating multiple maternal origins and high genetic diversity. Compa...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12156

    authors: Bigi D,Perrotta G,Zambonelli P

    更新日期:2014-08-01 00:00:00

  • Genome-wide association studies pathway-based meta-analysis for residual feed intake in beef cattle.

    abstract::Genome-wide association studies (GWASes) have been performed to search for genomic regions associated with residual feed intake (RFI); however inconsistent results have been obtained. A meta-analysis may improve these results by decreasing the false-positive rate. Additionally, pathway analysis is a powerful tool that...

    journal_title:Animal genetics

    pub_type: 杂志文章,meta分析

    doi:10.1111/age.12761

    authors: Duarte DAS,Newbold CJ,Detmann E,Silva FF,Freitas PHF,Veroneze R,Duarte MS

    更新日期:2019-04-01 00:00:00

  • Genetic variation in the bovine myostatin gene in UK beef cattle: allele frequencies and haplotype analysis in the South Devon.

    abstract::Work on Belgian Blue cattle revealed that an 11 base pair (bp) deletion within the bovine myostatin gene (GDF8) is associated with the double-muscled phenotype seen in this breed. Investigations focusing on other European breeds known to show double-muscling identified several mutations within the coding region of the...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1046/j.1365-2052.2000.00521.x

    authors: Smith JA,Lewis AM,Wiener P,Williams JL

    更新日期:2000-10-01 00:00:00

  • Polymorphism and gene organization of water buffalo MHC-DQB genes show homology to the BoLA DQB region.

    abstract::In cattle (Bos taurus), there is evidence of more than 50 alleles of BoLA-DQB (bovine lymphocyte antigen DQB) that are distributed across at least five DQB loci, making this region one of the most complex in the BoLA gene family. In this study, DQB alleles were analysed for the water buffalo (Bubalus bubalis), another...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2010.02157.x

    authors: Sena L,Schneider MP,Brenig BB,Honeycutt RL,Honeycutt DA,Womack JE,Skow LC

    更新日期:2011-08-01 00:00:00

  • Genetic evidence for the introgression of Western NR6A1 haplotype into Chinese Licha breed associated with increased vertebral number.

    abstract::There is evidence that NR6A1 is a strong candidate for being a causal gene underlying vertebral number in pigs. The Licha Black is one of the leanest Chinese indigenous pig breeds, having an average vertebral number of 21.5. The introgression of Western germplasm into Licha Black, resulting in increased vertebral numb...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2008.01820.x

    authors: Yang G,Ren J,Zhang Z,Huang L

    更新日期:2009-04-01 00:00:00

  • Linkage disequilibrium over short physical distances measured in sheep using a high-density SNP chip.

    abstract::The extent of linkage disequilibrium (LD) between genetic loci has implications for both association studies and the accuracy of genomic prediction. To characterise the persistence of LD in diverse sheep breeds, two SNP genotyping platforms were used. First, existing SNP genotypes from 63 breeds obtained using the ovi...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12197

    authors: Kijas JW,Porto-Neto L,Dominik S,Reverter A,Bunch R,McCulloch R,Hayes BJ,Brauning R,McEwan J,International Sheep Genomics Consortium.

    更新日期:2014-10-01 00:00:00

  • Characterization of swine short interspersed repetitive sequences.

    abstract::Swine genomic DNA segments containing repetitive sequences were isolated from a porcine genomic library using genomic DNA as a probe. Three fragments containing the repetitive sequences from two of the primary phage clones were subcloned for sequence analysis, which revealed six new PRE-1 repetitive families other tha...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1992.tb02164.x

    authors: Takahashi H,Awata T,Yasue H

    更新日期:1992-01-01 00:00:00

  • Runs of homozygosity: current knowledge and applications in livestock.

    abstract::This review presents a broader approach to the implementation and study of runs of homozygosity (ROH) in animal populations, focusing on identifying and characterizing ROH and their practical implications. ROH are continuous homozygous segments that are common in individuals and populations. The ability of these homoz...

    journal_title:Animal genetics

    pub_type: 杂志文章,评审

    doi:10.1111/age.12526

    authors: Peripolli E,Munari DP,Silva MVGB,Lima ALF,Irgang R,Baldi F

    更新日期:2017-06-01 00:00:00

  • FTO gene variants are associated with growth and carcass traits in cattle.

    abstract::An important aim in animal breeding is the improvement of growth and meat quality traits. Previous studies have demonstrated that genetic variants in the fat mass and obesity associated (FTO) gene have a relatively large effect on human obesity as well as on body composition in rodents and, more recently, in livestock...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12403

    authors: Jevsinek Skok D,Kunej T,Kovac M,Malovrh S,Potocnik K,Petric N,Zgur S,Dovc P,Horvat S

    更新日期:2016-04-01 00:00:00

  • Four new alleles at the mannose-6-phosphate isomerase locus in rabbit.

    abstract::Four new alleles at the rabbit (Oryctolagus cuniculus) mannose-6-phosphate isomerase (E.C. 5.3.1.8, MPI) locus are proposed to account for phenotypes observed after starch gel electrophoresis and enzymatic staining of red cell lysates and tissues. Population data from various wild and domestic rabbit populations are p...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1995.tb02617.x

    authors: Vieira J,Ferrand N

    更新日期:1995-02-01 00:00:00

  • Genetic variation within and among domesticated Atlantic salmon broodstocks in British Columbia, Canada.

    abstract::Atlantic salmon have been reared in the British Columbia, Canada aquaculture industry since the early 1980s. No breeding programmes spanned the entire production period and pedigree records were not kept for broodstocks prior to or since importation. Of the three recognized industry strains, two are of European ancest...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2004.01220.x

    authors: Withler RE,Supernault KJ,Miller KM

    更新日期:2005-02-01 00:00:00

  • Restriction site heteroplasmy in the mitochondrial DNA of the marine fish Sciaenops ocellatus (L.).

    abstract::Restriction site heteroplasmy involving the enzymes NcoI and XbaI was detected in the mitochondrial DNAs of two individuals of the marine fish Sciaenops ocellatus. This represents only the sixth documented example of mitochondrial DNA restriction site heteroplasmy in animals. Two heteroplasmic individuals were found i...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.1990.tb03241.x

    authors: Gold JR,Richardson LR

    更新日期:1990-01-01 00:00:00

  • Definition of the USDA103 strain of channel catfish (Ictalurus punctatus).

    abstract::Although there are differences in performance between genetic groups of channel catfish, identification and management of these groups is difficult because catfish strains look alike and individuals cannot be tagged efficiently. Thus, US catfish producers have not been able to objectively identify fish from different ...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2007.01586.x

    authors: Waldbieser GC,Wolters WR

    更新日期:2007-04-01 00:00:00

  • Identification of the myostatin locus (MSTN) as having a major effect on optimum racing distance in the Thoroughbred horse in the USA.

    abstract::One hundred and eighty-nine Thoroughbred horses that had won Graded Stakes races in North America were genotyped with the Illumina Equine SNP50 bead chip. Association tests using PLINK to determine whether any SNPs were associated with optimum racing distance (7 furlongs and under compared to 8-10 furlongs) identified...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2010.02126.x

    authors: Binns MM,Boehler DA,Lambert DH

    更新日期:2010-12-01 00:00:00

  • Breed-specific expression of DROSHA, DICER and AGO2 is regulated by glucocorticoid-mediated miRNAs in the liver of newborn piglets.

    abstract::MicroRNA (miRNA) biogenesis is determined mainly by Drosha, Dicer and Argonaute2 (Ago2). Different breeds of pigs with vast differences in serum cortisol level demonstrate distinct profiles of hepatic miRNA expression. As yet, little is known about whether glucocorticoid contributes to the breed differences in miRNA b...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12232

    authors: Li R,Jia Y,Zou H,Zhao R

    更新日期:2014-12-01 00:00:00

  • Genetic association between bovine NOD2 polymorphisms and infection by Mycobacterium avium subsp. paratuberculosis in Holstein-Friesian cattle.

    abstract::Nucleotide-Binding Oligomerization Domain 2 (NOD2) has been reported to be a candidate gene for Mycobacterium avium subsp. paratuberculosis (MAP) infection in a Bos taurus × Bos indicus mixed breed based on a genetic association with the c.2197T>C single nucleotide polymorphism (SNP). Nevertheless, this SNP has also b...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2010.02055.x

    authors: Ruiz-Larrañaga O,Garrido JM,Iriondo M,Manzano C,Molina E,Koets AP,Rutten VP,Juste RA,Estonba A

    更新日期:2010-12-01 00:00:00

  • Mapping and SNP analysis of bovine candidate genes for meat and carcass quality.

    abstract::The chromosomal localization of 13 bovine genes was determined using radiation hybrid (RH) mapping. The RH mapping data were in agreement with published data using either linkage, somatic cell hybrids or in situ hybridization. Mutation analysis using single-stranded conformational polymorphism, restriction fragment le...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1046/j.1365-2052.2003.01008.x

    authors: Haegeman A,Williams JL,Law A,Van Zeveren A,Peelman LJ

    更新日期:2003-10-01 00:00:00

  • QTL detection on porcine chromosome 12 for fatty-acid composition and association analyses of the fatty acid synthase, gastric inhibitory polypeptide and acetyl-coenzyme A carboxylase alpha genes.

    abstract::Refinement of previous QTL on porcine chromosome 12 for fatty-acid composition and a candidate gene association analysis were conducted using an Iberian x Landrace cross. The concentrations of ten fatty acids were assayed in backfat tissue from which four metabolic ratios were calculated for 403 F2 animals. Linkage an...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2007.01668.x

    authors: Muñoz G,Alves E,Fernández A,Ovilo C,Barragán C,Estellé J,Quintanilla R,Folch JM,Silió L,Rodríguez MC,Fernández AI

    更新日期:2007-12-01 00:00:00

  • Genetic diversity within chicken populations from different continents and management histories.

    abstract::Intra-population variation was assessed in 1970 chickens from 64 populations using 29 autosomal microsatellites. On average, 95% of the loci were polymorphic across populations. In 1456 (c. 83%) of the 1763 combinations of populations and polymorphic loci, no departure from Hardy-Weinberg equilibrium was observed. On ...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2007.01650.x

    authors: Granevitze Z,Hillel J,Chen GH,Cuc NT,Feldman M,Eding H,Weigend S

    更新日期:2007-12-01 00:00:00

  • Mitochondrial PEPCK: a highly polymorphic gene with alleles co-selected with Marek's disease resistance in chickens.

    abstract::The gene coding for the mitochondrial phosphoenolpyruvate carboxykinase (PEPCK-M), a pivotal component in gluconeogenesis from lactate via the Cori cycle, was highly polymorphic in strains of egg-type chickens (White Leghorn) of different origins. Based on MspI restriction fragment polymorphisms a total of seven allel...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1046/j.1365-2052.1998.295362.x

    authors: Li S,Zadworny D,Aggrey SE,Kuhnlein U

    更新日期:1998-10-01 00:00:00

  • Altered expression of CYP17A1 and CYP19A1 in undescended testes of dogs with unilateral cryptorchidism.

    abstract::Cryptorchidism is the most common disorder of sex development in dogs and testosterone plays a crucial role in the inguinal phase of the testes descending into the scrotum. The molecular background of impaired testosterone synthesis in the testes of cryptorchid dogs is poorly elucidated. In this study, we analyzed the...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/age.12977

    authors: Krzeminska P,Stachowiak M,Skrzypski M,Nowak T,Maslak A,Switonski M

    更新日期:2020-10-01 00:00:00

  • Detection of copy number variants in the horse genome and examination of their association with recurrent laryngeal neuropathy.

    abstract::We used the data from a recently performed genome-wide association study using the Illumina Equine SNP50 beadchip for the detection of copy number variants (CNVs) and examined their association with recurrent laryngeal neuropathy (RLN), an important equine upper airway disease compromising performance. A total of 2797...

    journal_title:Animal genetics

    pub_type: 杂志文章

    doi:10.1111/j.1365-2052.2012.02373.x

    authors: Dupuis MC,Zhang Z,Durkin K,Charlier C,Lekeux P,Georges M

    更新日期:2013-04-01 00:00:00