Role of the heme propionates in the interaction of heme with apomyoglobin and apocytochrome b5.

Abstract:

:The heme propionate groups of both myoglobin (Mb) and cytochrome b5 form hydrogen bonds with nearby surface amino acids residues that are believed to stabilize the heme-protein complex. To evaluate the magnitude of this stabilization, the kinetics of heme dissociation from variants of horse heart Mb and cytochrome b5 in which these hydrogen bonding interactions have been systematically eliminated were studied by the method of Hargrove and colleagues (1994), and their thermal stability was assessed. Elimination of each hydrogen bond was found to decrease the thermal stability of the proteins and increase the rate constant for heme dissociation in a progressive fashion. For the Mb derivatives, 1H-NMR studies indicate that the elimination of individual hydrogen bonds also affects the rate at which the heme orientational equilibrium is achieved. In both types of kinetics experiment, the effects of decreasing the number of potential hydrogen bonding interactions are found to be cumulative. Despite their kinetic effects, elimination of these hydrogen bonding interactions had no influence on the initial distribution of heme orientational isomers immediately following reconstitution or on the equilibrium constant of heme orientational disorder. The interactions between the heme propionates and nearby protein residues play a partial role in the stabilization of the heme-protein complex and are a major factor in the kinetic "trapping" of the minor heme orientation. Comparisons of the various rate constants determined for the mechanism of heme binding and reorientation suggests that the intramolecular reorientation mechanism is slightly favored over the intermolecular mechanism.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Hunter CL,Lloyd E,Eltis LD,Rafferty SP,Lee H,Smith M,Mauk AG

doi

10.1021/bi961385u

subject

Has Abstract

pub_date

1997-02-04 00:00:00

pages

1010-7

issue

5

eissn

0006-2960

issn

1520-4995

pii

bi961385u

journal_volume

36

pub_type

杂志文章
  • Phospholipid asymmetry in large unilamellar vesicles induced by transmembrane pH gradients.

    abstract::The influence of membrane pH gradients on the transbilayer distribution of some common phospholipids has been investigated. We demonstrate that the transbilayer equilibrium of the acidic phospholipids egg phosphatidylglycerol (EPG) and egg phosphatidic acid (EPA) can be manipulated by membrane proton gradients, wherea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00436a009

    authors: Hope MJ,Redelmeier TE,Wong KF,Rodrigueza W,Cullis PR

    更新日期:1989-05-16 00:00:00

  • 9-cis-retinoids: biosynthesis of 9-cis-retinoic acid.

    abstract::Retinoids function through conformational alterations of ligand-dependent nuclear transcription factors, the retinoic acid receptors, and retinoid X receptors. 9-cis-Retinoic acid is a known biological ligand for retinoid X receptors, but its synthesis pathway in vivo is largely unknown. Recently, we identified a cis-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992152g

    authors: Paik J,Vogel S,Piantedosi R,Sykes A,Blaner WS,Swisshelm K

    更新日期:2000-07-11 00:00:00

  • Effect of four-alpha-helix bundle cavity size on volatile anesthetic binding energetics.

    abstract::Currently, it is thought that inhalational anesthetics cause anesthesia by binding to ligand-gated ion channels. This is being investigated using four-alpha-helix bundles, small water-soluble analogues of the transmembrane domains of the "natural" receptor proteins. The study presented here specifically investigates h...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034623b

    authors: Manderson GA,Michalsky SJ,Johansson JS

    更新日期:2003-09-30 00:00:00

  • Three-dimensional structure of murine anti-p-azophenylarsonate Fab 36-71. 2. Structural basis of hapten binding and idiotypy.

    abstract::Comparison between the structures and solvent-accessible surfaces of the antigen-binding fragments of two murine anti-p-azophenylarsonate monoclonal antibodies, one bearing a major cross-reactive idiotype of A/J strain mice (36-71) and one lacking the idiotype (R19.9; Lascombe et al., 1989), highlight the structural b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00229a023

    authors: Strong RK,Petsko GA,Sharon J,Margolies MN

    更新日期:1991-04-16 00:00:00

  • Photoaffinity labeling of the human receptor for urokinase-type plasminogen activator using a decapeptide antagonist. Evidence for a composite ligand-binding site and a short interdomain separation.

    abstract::Binding of urokinase-type plasminogen activator (uPA) to its cellular receptor (uPAR) renders the cell surface a favored site for plasminogen activation. Recently, a 15-mer peptide antagonist of the uPA-uPAR interaction, with an IC50 value of 10 nM, was identified using phage display technology [Goodson, R. J., Doyle,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972787k

    authors: Ploug M,Ostergaard S,Hansen LB,Holm A,Danø K

    更新日期:1998-03-17 00:00:00

  • Synthesis of (2R,3R)-erythro- and (2R,3S)-threo-fluoromalate using malic dehydrogenase; stereoselectivity of malic dehydrogenase.

    abstract::3-Fluorooxalacetate is a substrate for malic dehydrogenase. When enzymatic reduction is slower than the rate of epimerization of the two enantiomers, only (2R,3R)-erythro-fluoromalate is formed. Conversely, when a high enzyme level and excess of NADH lead to reduction that is fast relative to the epimerization rate, e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981819g

    authors: Urbauer JL,Bradshaw DE,Cleland WW

    更新日期:1998-12-22 00:00:00

  • The structures of the C185S and C185A mutants of sulfite oxidase reveal rearrangement of the active site.

    abstract::Sulfite oxidase (SO) catalyzes the physiologically critical conversion of sulfite to sulfate. Enzymatic activity is dependent on the presence of the metal molybdenum complexed with a pyranopterin-dithiolene cofactor termed molybdopterin. Comparison of the amino acid sequences of SOs from a variety of sources has ident...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1001954

    authors: Qiu JA,Wilson HL,Pushie MJ,Kisker C,George GN,Rajagopalan KV

    更新日期:2010-05-11 00:00:00

  • Different binding modes of two flaviolin substrate molecules in cytochrome P450 158A1 (CYP158A1) compared to CYP158A2.

    abstract::Cytochrome P450 158A2 (CYP158A2) has been shown to catalyze an unusual oxidative C-C coupling reaction to polymerize flaviolin and form highly conjugated pigments (three isomers of biflaviolin and one triflaviolin) in Streptomyces coelicolor A3(2) which protect the soil bacterium from deleterious effects of UV irradia...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7006959

    authors: Zhao B,Lamb DC,Lei L,Kelly SL,Yuan H,Hachey DL,Waterman MR

    更新日期:2007-07-31 00:00:00

  • Importance of domain closure for homotropic cooperativity in Escherichia coli aspartate transcarbamylase.

    abstract::The importance of the interdomain bridging interactions observed only in the R-state structure of Escherichia coli aspartate transcarbamylase between Glu-50 of the carbamoyl phosphate domain with both Arg-167 and Arg-234 of the aspartate domain has been investigated by using site-specific mutagenesis. Two mutant versi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00458a015

    authors: Newton CJ,Kantrowitz ER

    更新日期:1990-02-13 00:00:00

  • Interaction of protein kinase C isozymes with Rho GTPases.

    abstract::Evidence is provided for direct protein-protein interactions between protein kinase C (PKC) alpha, betaI, betaII, gamma, delta, epsilon, and zeta and members of the Rho family of small GTPases. Previous investigations, based on the immunoprecipitation approach, have provided evidence consistent with a direct interacti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001654n

    authors: Slater SJ,Seiz JL,Stagliano BA,Stubbs CD

    更新日期:2001-04-10 00:00:00

  • A test of discreteness-of-charge effects in phospholipid vesicles: measurements using paramagnetic amphiphiles.

    abstract::A new series of negatively charged, paramagnetic alkylsulfonate probes was synthesized and can be used to measure both the internal and the external surface potentials of model membrane systems. We tested for discreteness-of-charge effects in lipid membranes by comparing the surface potentials, estimated by use of the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00373a014

    authors: Hartsel SC,Cafiso DS

    更新日期:1986-12-16 00:00:00

  • Pressure effects on dipalmitoylphosphatidylcholine bilayers measured by 2H nuclear magnetic resonance.

    abstract::The effects of pressure, up to 5 kbar, on multilamellar vesicles of 1,2-dipalmitoyl-sn-phosphatidylcholine perdeuterated in the acyl chains (DPPC-d62) were examined by using high-pressure NMR techniques. A deuterium probe was built, and the quadrupole splitting was measured against pressure at various temperatures. Th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00227a022

    authors: Driscoll DA,Samarasinghe S,Adamy S,Jonas J,Jonas A

    更新日期:1991-04-02 00:00:00

  • Identification of factor XIIIA-reactive glutamine acceptor and lysine donor sites within fibronectin-binding protein (FnbA) from Staphylococcus aureus.

    abstract::Staphylococcal fibronectin-binding protein (FnbA) is a surface-associated receptor responsible for the reversible binding of bacteria to human fibronectin and fibrin(ogen). Recently we have shown that FnbA serves as a substrate for coagulation factor XIIIa and undergoes covalent cross-linking to its ligands, resulting...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049278k

    authors: Anderson ET,Fletcher L,Severin A,Murphy E,Baker SM,Matsuka YV

    更新日期:2004-09-21 00:00:00

  • Kinetic mechanism of the GCN5-related chromosomal aminoglycoside acetyltransferase AAC(6')-Ii from Enterococcus faecium: evidence of dimer subunit cooperativity.

    abstract::The aminoglycoside 6'-N-acetyltransferase AAC(6')-Ii from Enterococcus faecium is an important microbial resistance determinant and a member of the GCN5-related N-acetyltransferase (GNAT) superfamily. We report here the further characterization of this enzyme in terms of the kinetic mechanism of acetyl transfer and id...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034148h

    authors: Draker KA,Northrop DB,Wright GD

    更新日期:2003-06-03 00:00:00

  • Effects of lipids and long-chain alkyl derivatives on the activity of (Ca2+-Mg2+)-ATPase.

    abstract::The ATPase activity of the (Ca2+-Mg2+)-ATPase reconstituted into bilayers of phosphatidylcholines depends on the fatty acyl chain length of the phospholipids. It is shown that the fluorescence response to Ca2+ of the ATPase modified with fluorescein isothiocyanate is also dependent on phospholipid structure and is int...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00371a043

    authors: Froud RJ,East JM,Jones OT,Lee AG

    更新日期:1986-11-18 00:00:00

  • Isothermal titration calorimetric studies on the binding of deoxytrimannoside derivatives with artocarpin: implications for a deep-seated combining site in lectins.

    abstract::The carbohydrate binding specificity of the seed lectin from Artocarpus integrifolia, artocarpin, has been elucidated by the enzyme-linked lectin absorbent assay [Misquith, S., et al (1994) J. Biol. Chem. 269, 30393-30401], wherein it was demonstrated to be a Man/Glc specific lectin with high affinity for the trisacch...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000744p

    authors: Rani PG,Bachhawat K,Reddy GB,Oscarson S,Surolia A

    更新日期:2000-09-05 00:00:00

  • Double-stranded DNA binding characteristics and subcellular distribution of a minor groove binding diphenyl ether bisbenzimidazole.

    abstract::The interactions of Hoechst 33377 (H1) with 20 different oligomeric duplexes have been investigated via spectrofluorometric titrations and/or thermal denaturation experiments. H1 is shown to form 2:1 complexes with dsDNA binding sites of at least four contiguous A/T base pairs. H1 is also shown to possess the rare abi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0103415

    authors: Satz AL,White CM,Beerman TA,Bruice TC

    更新日期:2001-05-29 00:00:00

  • Monoclonal antibodies defining blood group A variants with difucosyl type 1 chain (ALeb) and difucosyl type 2 chain (ALey).

    abstract::Three hybridomas secreting monoclonal antibodies, HH1, HH2, and HH3, defining different difucosyl A structures (ALeb or ALey), have been established. Antibody HH1 (IgG2a) reacts specifically with the difucosyl A structure irrespective of a type 1 or type 2 chain, while antibody HH2 (IgG3) reacts exclusively with the d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00343a024

    authors: Clausen H,McKibbin JM,Hakomori S

    更新日期:1985-10-22 00:00:00

  • A Transition Metal-Binding, Trimeric βγ-Crystallin from Methane-Producing Thermophilic Archaea, Methanosaeta thermophila.

    abstract::βγ-Crystallins are important constituents of the vertebrate eye lens, whereas in microbes, they are prevalent as Ca2+-binding proteins. In archaea, βγ-crystallins are conspicuously confined to two methanogens, viz., Methanosaeta and Methanosarcina. One of these, i.e., M-crystallin from Methanosarcina acetivorans, has ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00985

    authors: Srivastava SS,Jamkhindikar AA,Raman R,Jobby MK,Chadalawada S,Sankaranarayanan R,Sharma Y

    更新日期:2017-03-07 00:00:00

  • Mechanism of the PII-activated phosphatase activity of Escherichia coli NRII (NtrB): how the different domains of NRII collaborate to act as a phosphatase.

    abstract::The phosphatase activity of the homodimeric NRII protein of Escherichia coli is activated by the PII protein and requires all three domains of NRII. Mutations in the N-terminal domain (L16R), central domain (A129T), C-terminal domain PII-binding site (S227R), and C-terminal domain ATP-lid (Y302N) of NRII result in dim...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi030065p

    authors: Pioszak AA,Ninfa AJ

    更新日期:2003-07-29 00:00:00

  • Ultraviolet resonance Raman spectra of cytochrome c conformational states.

    abstract::Ultraviolet resonance Raman (UV RR) spectra are reported for ferricytochrome c from tuna and horse heart at pH 1.6, 7, 10, and 13, representing distinct conformational states of the protein (states II, III, IV, and V, respectively). The spectra were obtained with pulsed laser excitation at 200 and 218 nm, via H2 Raman...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00339a035

    authors: Copeland RA,Spiro TG

    更新日期:1985-08-27 00:00:00

  • The structure of the bovine protein tyrosine phosphatase dimer reveals a potential self-regulation mechanism.

    abstract::The bovine protein tyrosine phosphatase (BPTP) is a member of the class of low-molecular weight protein tyrosine phosphatases (PTPases) found to be ubiquitous in mammalian cells. The catalytic site of BPTP contains a CX(5)R(S/T) phosphate-binding motif or P-loop (residues 12-19) which is the signature sequence for all...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990381x

    authors: Tabernero L,Evans BN,Tishmack PA,Van Etten RL,Stauffacher CV

    更新日期:1999-09-07 00:00:00

  • Altered APP processing in PDAPP (Val717 --> Phe) transgenic mice yields extended-length Abeta peptides.

    abstract::Central to the pathology of Alzheimer's disease (AD) is the profuse accumulation of amyloid-beta (Abeta) peptides in the brain of affected individuals, and several amyloid precursor protein (APP) transgenic (Tg) mice models have been created to mimic Abeta deposition. Among these, the PDAPP Tg mice carrying the famili...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051213+

    authors: Esh C,Patton L,Kalback W,Kokjohn TA,Lopez J,Brune D,Newell AJ,Beach T,Schenk D,Games D,Paul S,Bales K,Ghetti B,Castaño EM,Roher AE

    更新日期:2005-10-25 00:00:00

  • Phosphinothricin-tripeptide synthetases from Streptomyces viridochromogenes.

    abstract::Phosphinothricyl-alanyl-alanine (Pt tripeptide (Ptt), bialaphos) is a metabolite produced by Streptomyces viridochromogenes and Streptomyces hygroscopicus. It contains the unique phosphinoamino acid phosphinothricin (Pt), which after cleavage from Ptt is active as an inhibitor of glutamine synthetase. We have isolated...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9719410

    authors: Grammel N,Schwartz D,Wohlleben W,Keller U

    更新日期:1998-02-10 00:00:00

  • Regulation of the expression of the β-lactam antibiotic-resistance determinants in methicillin-resistant Staphylococcus aureus (MRSA).

    abstract::β-Lactam antibiotics have faced obsolescence with the emergence of methicillin-resistant Staphylococcus aureus (MRSA). A complex set of events ensues upon exposure of MRSA to these antibiotics, which culminates in proteolysis of BlaI or MecI, two gene repressors, and results in the induction of resistance. We report s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500074w

    authors: Blázquez B,Llarrull LI,Luque-Ortega JR,Alfonso C,Boggess B,Mobashery S

    更新日期:2014-03-18 00:00:00

  • Affinity and sequence specificity of DNA binding and site selection for primer synthesis by Escherichia coli primase.

    abstract::Primase is an essential DNA replication enzyme in Escherichia coli and responsible for primer synthesis during lagging strand DNA replication. Although the interaction of primase with single-stranded DNA plays an important role in primer RNA and Okazaki fragment synthesis, the mechanism of DNA binding and site selecti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026711m

    authors: Khopde S,Biswas EE,Biswas SB

    更新日期:2002-12-17 00:00:00

  • Cofactor Complexes of DesD, a Model Enzyme in the Virulence-related NIS Synthetase Family.

    abstract::The understudied nonribosomal-peptide-synthetase-independent siderophore (NIS) synthetase family has been increasingly associated with virulence in bacterial species due to its key role in the synthesis of hydroxamate and carboxylate "stealth" siderophores. We have identified a model family member, DesD, from Streptom...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00899

    authors: Hoffmann KM,Goncuian ES,Karimi KL,Amendola CR,Mojab Y,Wood KM,Prussia GA,Nix J,Yamamoto M,Lathan K,Orion IW

    更新日期:2020-09-22 00:00:00

  • Integrin-supported fast rate intracellular delivery of plasmid DNA by extracellular matrix protein embedded calcium phosphate complexes.

    abstract::Extracellular matrix (ECM) proteins, such as collagen and fibronectin, play vital roles in development and maintenance of hard tissue (bone or tooth) and are, consequently, thoroughly investigated for construction of biomimetic scaffolds in combination with calcium phosphate (CaP) material (the major component of hard...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi050595g

    authors: Chowdhury EH,Nagaoka M,Ogiwara K,Zohra FT,Kutsuzawa K,Tada S,Kitamura C,Akaike T

    更新日期:2005-09-20 00:00:00

  • Glutathione induces helical formation in the carboxy terminus of human glutathione transferase A1-1.

    abstract::The structure and dynamic properties of the C-terminal region of the human class alpha glutathione transferase A1-1 have been investigated with high-resolution NMR methods. On the basis of crystallographic and fluorescence measurements, this 13-residue segment of the enzyme is presumed to be disordered in the unligand...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0363329

    authors: Zhan Y,Rule GS

    更新日期:2004-06-15 00:00:00

  • Identification of a 33-kilodalton cytoskeletal protein with high affinity for the sodium channel.

    abstract::The voltage-sensitive sodium channel is an intrinsic membrane protein that is nonrandomly distributed in neurons, suggesting a possible interaction with other cellular constituents. In this study, we have directly tested the hypothesis that components of the cytoskeleton interact with sodium channels. Utilizing the me...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00406a003

    authors: Edelstein NG,Catterall WA,Moon RT

    更新日期:1988-03-22 00:00:00