Abstract:
:Most duplex DNAs that are in the "B" conformation are not immunogenic. One important exception is poly(dG) X poly(dC), which produces a good immune response even though, by many criteria, it adopts a conventional right-handed helix. In order to investigate what features are being recognized, monoclonal antibodies were prepared against poly(dG) X poly(dC) and the related polymer poly(dG) X poly(dm5C). Jel 72, which is an immunoglobulin G, binds only to poly(dG) X poly(dC), while Jel 68, which is an immunoglobulin M, binds approximately 10-fold more strongly to poly(dG) X poly(dm5C) than to poly(dG) X poly(dC). For both antibodies, no significant interaction could be detected with any other synthetic DNA duplexes including poly[d(Gm5C)] X poly[d(Gm5C)] in both the "B" and "Z" forms, poly[d(Tm5Cm5C)] X poly[d(GGA)], and poly[d(TCC)] X poly[d(GGA)], poly(dI) X poly(dC), or poly(dI) X poly(dm5C). The binding to poly(dG) X poly(dC) was inhibited by ethidium and by disruption of the DNA duplex, confirming that the antibodies were not recognizing single-stranded or multistranded structures. Furthermore, Jel 68 binds significantly to phage XP-12 DNA, which contains only m5C residues and will precipitate this DNA in the absence of a second antibody. The results suggest that (dG)n X (dm5C)n sequences in natural DNA exist in recognizably distinct conformations.
journal_name
Biochemistryjournal_title
Biochemistryauthors
Lee JS,Woodsworth ML,Latimer LJdoi
10.1021/bi00309a024subject
Has Abstractpub_date
1984-07-03 00:00:00pages
3277-81issue
14eissn
0006-2960issn
1520-4995journal_volume
23pub_type
杂志文章相关文献
BIOCHEMISTRY文献大全abstract::Chemoenzymatic glycan remodeling by endoglycosidase-catalyzed deglycosylation and reglycosylation is emerging as an attractive approach for producing homogeneous glycoforms of antibodies, and the success of this approach depends on the discovery of efficient endoglycosidases and their glycosynthase mutants. We report ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.8b00719
更新日期:2018-09-04 00:00:00
abstract::To identify how many rhodopsin intermediates interact with retinal G-protein transducin, the photobleaching process of chicken rhodopsin has been investigated in the presence or absence of transducin by means of time-resolved low-temperature spectroscopy. Singular value decomposition (SVD) analysis of the spectral dat...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi970932o
更新日期:1997-11-18 00:00:00
abstract::Hydrolysis of monodisperse short chain phosphatidylcholines, far below their critical micelle concentration, by phospholipase A2 (PLA2) and other interfacial enzymes is characterized. Results show that virtually all the observed hydrolysis by pancreatic and human inflammatory PLA2 occurs on surfaces of the reaction ve...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi990194z
更新日期:1999-08-10 00:00:00
abstract::Decarboxylation reactions from comparable thiamin diphosphate- and thiamin-derived adducts of p-(halomethyl)benzoylformic acids in enzymic and non-enzymic reactions, respectively, reveal critical distinctions in otherwise similar Breslow intermediates. The ratio of protonation to chloride elimination from the Breslow ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.9b00298
更新日期:2019-08-27 00:00:00
abstract::The interfacial interactions of cholesterol with sphingomyelins (SMs) containing various homogeneous acyl chains have been investigated by Langmuir film balance approaches. Low in-plane elasticity among the packed lipids was identified as an important physical feature of the cholesterol-sphingomyelin liquid-ordered ph...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi002791n
更新日期:2001-05-22 00:00:00
abstract::The circulating protein transthyretin (TTR) can unfold, oligomerize, and form highly structured amyloid fibrils that are deposited in tissues, causing organ damage and disease. This pathogenic process is caused by a heritable TTR point mutation in cases of familial TTR-related amyloidosis or wild-type TTR in cases of ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi5011249
更新日期:2015-01-20 00:00:00
abstract::Previous experiments have shown that a Synechocystis sp. PCC 6803 mutant (delta psbO) lacking the extrinsic manganese-stabilizing protein (MSP) exhibits impaired, but significant levels of H2O-splitting activity [Burnap, R., & Sherman, L.A. (1991) Biochemistry 30, 440-446]. [14C]DCMU-binding experiments now show that ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00147a027
更新日期:1992-08-18 00:00:00
abstract::The dynamic behavior of the rRNA A-site plays an important functional role. We have employed femtosecond time-resolved spectroscopy to investigate the nature of the conformational dynamics. In the drug-free state, the A-site samples multiple distinct conformations. Drug binding shifts the population distribution in a ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi400053s
更新日期:2013-03-12 00:00:00
abstract::Clostridium perfringens epsilon toxin belongs to the aerolysin-like family of pore-forming toxins and is one of the most potent bacterial toxins known. The epsilon toxin causes fatal enterotoxemia in sheep, goats, and possibly humans. Evidence indicates that the toxin binds to protein receptors including hepatitis A v...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi300690a
更新日期:2012-09-25 00:00:00
abstract::The effects of an inhibitory monoclonal antibody (mAb) raised against the beta subunit of the Escherichia coli RNA polymerase were determined on the kinetics and structural interactions during formation of the open promoter complex (RPo). Analysis of the kinetics of abortive initiation on linear and supercoiled templa...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00409a058
更新日期:1988-05-03 00:00:00
abstract::Ca(2+)/calmodulin-dependent protein kinase kinases (CaMKKs) phosphorylate and activate specific downstream protein kinases, including CaMKI, CaMKIV, and 5'-AMP-activated protein kinase, which mediates a variety of Ca(2+) signaling cascades. CaMKKs have been shown to undergo autophosphorylation, although their role in ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi201005g
更新日期:2011-09-27 00:00:00
abstract::The beta-glucosidase from Agrobacterium faecalis (previously Alcaligenes faecalis) has been subjected to a detailed kinetic investigation with a range of substrates to probe its specificity and mechanism. It has a relatively broad specificity for the substrate sugar moiety and exhibits a classical pH dependence for it...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00156a015
更新日期:1992-10-20 00:00:00
abstract::NAD(P)H:quinone oxidoreductase 1 (NQO1) is currently an emerging target in pancreatic cancer. In this report, we describe a series of indolequinones, based on 5-methoxy-1,2-dimethyl-3-[(4-nitrophenoxy)methyl]indole-4,7-dione (ES936), and evaluate NQO1 inhibition and growth inhibitory activity in the human pancreatic M...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi700008y
更新日期:2007-05-22 00:00:00
abstract::Structures of glycopeptides obtained by exhaustive Pronase digestion of high molecular weight (1.7 X 10(5)) salmon egg polysialoglycoprotein have been elucidated. Six principal glycopeptides isolated by gel chromatography and DEAE-Sephadex A-25 chromatography in the absence or presence of borate ion were analyzed for ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00341a029
更新日期:1985-09-24 00:00:00
abstract::Pyrimidine oligonucleotides have been shown to prime the E. coli DNA polymerase I repair reaction, specifically and reproducibly. DNA molecules up to 30 nucleotides long have been obtained from the extension of oligopyrimidine primers, 9 to 11 nucleotides long isolated from the complementary (minus) strand of bacterio...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00598a015
更新日期:1978-03-07 00:00:00
abstract::The modulatory action of Ca2+-calmodulin on multiple targets is inhibited by trifluoperazine, which competes with target proteins for calmodulin binding. The structure of calmodulin crystallized with two trifluoperazine molecules is determined by X-ray crystallography at 2.74 A resolution. The X-ray data together with...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi980795a
更新日期:1998-11-03 00:00:00
abstract::The positions of the several sea urchin histone genes on the eukaryotic fragments of the chimeric plasmids pSp2 and pSp17 have been mapped relative to the Eco RI and Hind III restriction endonuclease sites on the plasmids. Two principal mapping methods using the electron microscope have been used: (a) the R-loop proce...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00626a040
更新日期:1977-04-05 00:00:00
abstract::The NO adducts of leghemoglobin (Lb) are implicated in biological processes, but only the adduct with ferrous Lb (Lb(II)NO) has been characterized previously. We report the first characterization of ferric nitrosylleghemoglobin (Lb(III)NO) and XAS experiments performed on frozen aqueous solutions of Lb(II)NO and Lb(II...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi990730n
更新日期:1999-12-14 00:00:00
abstract::The proteins which have been left tightly bound to the tissue culture substrate after ethylenebis (oxyethyl-enenitrilo) tetraacetic acid (EGTA)-mediated removal of normal, virus-transformed, and revertant mouse cells and which have been implicated in the substrate adhesion process have been analyzed by slab sodium dod...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00663a028
更新日期:1976-09-07 00:00:00
abstract::Thiolases are CoA-dependent enzymes which catalyze the formation of a carbon-carbon bond in a Claisen condensation step and its reverse reaction via a thiolytic degradation mechanism. Mitochondrial acetoacetyl-coenzyme A (CoA) thiolase (T2) is important in the pathways for the synthesis and degradation of ketone bodie...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi6026192
更新日期:2007-04-10 00:00:00
abstract::Thermobifida fusca Cel9A-90, an unusual family 9 enzyme, is a processive endoglucanase containing a catalytic domain closely linked to a family 3c cellulose binding domain (Cel9A-68) followed by a fibronectin III-like domain and a family 2 cellulose binding domain. To study its catalytic mechanism, 12 mutant genes wit...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi049394n
更新日期:2004-08-03 00:00:00
abstract::Cells can be transiently permeabilized by application of high electric pulses of short duration. A direct consequence of this treatment is to induce a fusogenic state in the pulsed membrane. The molecular events underlying these phenomena remain to be explained. During our work, we investigated the effects of pulsing ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00471a009
更新日期:1990-05-15 00:00:00
abstract::Lipocortin I is a 39-kilodalton membrane-associated protein that in A431 cells is phosphorylated on tyrosine in response to epidermal growth factor (EGF). We have used recombinant human lipocortin I as a substrate for several protein kinases and identified phosphorylated residues by a combination of peptide mapping an...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00410a024
更新日期:1988-05-17 00:00:00
abstract::The effect of concentrated glycerol on the thermal transitions of chymotrypsinogen and ribonuclease has been examined by differential spectrophotometry at 293 and 287 mm, respectively. It was found that for both proteins addition of glycerol raises the transition temperature, the increase in Tm being greater for ribon...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00519a024
更新日期:1981-08-04 00:00:00
abstract::A rapid, high-yield procedure has been developed for the purification of HPr from the Escherichia coli phosphoenolpyruvate dependent phosphotransferase system. During this procedure, the protein copurifies with a 2500-dalton homopolysaccharide which we have identified as alpha 1-6 glucan. The results of steady-state k...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00581a013
更新日期:1979-07-10 00:00:00
abstract::The dynamics of the enthalpy and volume changes found in the photodissociation of CO from sperm whale carboxymyoglobin and two site-directed mutants in which arginine-45 is replaced by glycine and asparagine are examined by photoacoustic calorimetry. An intermediate is observed whose lifetime at 20 degrees C is 700 ns...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00480a026
更新日期:1990-07-17 00:00:00
abstract::Native ribonucleotide reductase from Escherichia coli exhibits a resonance-enhanced Raman mode at 1498 cm-1 that is characteristic of a tyrosyl radical. The Raman frequency as well as the absorption maximum at 410 nm identifies the radical as being in a deprotonated state. The B2 subunit of ribonucleotide reductase sh...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00430a074
更新日期:1989-02-21 00:00:00
abstract::In the absence of any external electron donor, the "peroxy" intermediate of cytochrome c oxidase (CcO-607) is converted to the ferryl form (CcO-580) and subsequently to oxidized enzyme. The rate of conversion of CcO-607 to the CcO-580 form is pH dependent between pH 3.0 and pH 7.6. A plot of the logarithm of the rate ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi002373i
更新日期:2001-02-13 00:00:00
abstract::Time-resolved infrared (TRIR) techniques have been employed to study the reactions of carbon monoxide with the cytochrome alpha 3-Cu(B) site of cytochrome c oxidase (CcO). The ligation dynamics immediately following photodissociation have been investigated using picosecond TRIR spectroscopy and linear dichroism. The r...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00168a015
更新日期:1994-01-18 00:00:00
abstract::There is considerable evidence that long-range interactions stabilize residual protein structure under denaturing conditions. However, evaluation of the effect of a specific contact on structure in the denatured state has been difficult. Iso-1-cytochrome c variants with a Lys54 → His mutation form a particularly stabl...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.7b01002
更新日期:2017-12-26 00:00:00