Abstract:
:13C NMR spectroscopy has been used to study the amino group environments and metal binding properties of 13C reductively methylated bovine alpha-lactalbumin. Bovine alpha-lactalbumin is a Ca2+ metalloprotein containing 12 lysyl amino groups and a free amino terminus. All 13 amino groups can be 13C-dimethylated without altering Ca2+ binding or biological activity. pH titrations (chemical shift vs. pH) of this dimethylated protein reveal unique behavior for each of the 13 amino groups. The pKa values for the lysyl amino groups range from 9.1 to 10.8 while the pKa for the N-terminal amino group is 8.3. This relatively high pKa (by 1 pH unit) for the N-terminal supports its interaction in an ion pair as proposed by Warme et al. [Warme, P. K., Momany, F. A., Rumball, S. V., Tuttle, R. W., & Scheraga, H. A. (1974) Biochemistry 13, 768-782]. Carbon-13 NMR studies further show that the removal of Ca2+ from the high-affinity binding site results in a conformational change, with the disruption of the N-terminal ion pair interaction (pKa decreased to 7.4). The study of Zn2+ binding to Ca2+-saturated protein suggests that Zn2+ binds initially at a low-affinity Ca2+ site while maintaining the N-terminal ion pair interaction. The further addition of Zn2+ leads to the disruption of this ion pair forming a presumed apoprotein-like conformation. Finally on the basis of the specific effects of added Mn2+ on the 13C NMR spectra of the methylated protein, a low-affinity divalent metal binding site is proposed about 7.5 A from the amino terminus.
journal_name
Biochemistryjournal_title
Biochemistryauthors
Gerken TAdoi
10.1021/bi00315a026subject
Has Abstractpub_date
1984-09-25 00:00:00pages
4688-97issue
20eissn
0006-2960issn
1520-4995journal_volume
23pub_type
杂志文章相关文献
BIOCHEMISTRY文献大全abstract::The complex of ribonuclease A (RNase A) with uridine vanadate (U-V), a transition-state analogue, has been studied with 51V and proton NMR spectroscopy in solution and by neutron diffraction in the crystalline state. Upon the addition of aliquots of U-V at pH 6.6, the C epsilon-H resonances of the two active-site hist...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00329a038
更新日期:1985-04-09 00:00:00
abstract::Copper, zinc superoxide dismutase is a dimeric enzyme, and it has been shown that no cooperativity between the two subunits of the dimer is operative. The substitution of two hydrophobic residues, Phe 50 and Gly 51, with two Glu's at the interface region has disrupted the quaternary structure of the protein, thus prod...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi9803473
更新日期:1998-08-25 00:00:00
abstract::The transfer of ganglioside GM1 from micelles to membranes and between different membrane populations has been examined by using a pyrene fatty acid derivative of the ganglioside. The transfer of gangliosides from micelles to membranes depends on the physical state as well as the molecular composition of the acceptor ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00375a032
更新日期:1987-01-13 00:00:00
abstract::X-ray crystallographic studies have shown that DNA binding by human polymerase beta (pol beta) occurs primarily through two structurally and sequentially homologous helix-hairpin-helix (HhH) motifs, one in the fingers subdomain and the other in the 8-kDa domain [Pelletier, H., Sawaya, M. R., Wolfle, W., Wilson, S. H.,...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi960790i
更新日期:1996-10-01 00:00:00
abstract::The complete primary and three-dimensional solution structures of subtilosin A (1), a bacteriocin from Bacillus subtilis, were determined by multidimensional NMR studies on peptide produced using isotopically labeled [(13)C,(15)N]medium derived from Anabaena sp. grown on sodium [(13)C]bicarbonate and [(15)N]nitrate. A...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi0359527
更新日期:2004-03-30 00:00:00
abstract::The extent of rapid (picosecond) backbone motions within the glucocorticoid receptor DNA-binding domain (GR DBD) has been investigated using proton-detected heteronuclear NMR spectroscopy on uniformly 15N-labeled protein fragments containing the GR DBD. Sequence-specific 15N resonance assignments, based on two- and th...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00163a007
更新日期:1992-12-08 00:00:00
abstract::The technique of fluorescence recovery after photobleaching is used to perform an extensive study of the lateral diffusion of a phospholipid probe in the binary mixture dimyristoylphosphatidylcholine/cholesterol, above the melting temperature of the phospholipid. In the regions of the phase diagram where a single liqu...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00144a013
更新日期:1992-07-28 00:00:00
abstract::The biosynthesis of the antitumor antibiotic sibiromycin by Streptosporangium sibiricum requires the construction of four units: the amino sugar from glucose; the anthranilate ring from DL-tryptophan probably via kynurenine; the aromatic methyl group from methionine; the propylidene proline from L-tyrosine with the lo...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00586a029
更新日期:1979-09-18 00:00:00
abstract::Actin-depolymerizing factor (ADF)/cofilin enhances the turnover of actin filaments by two separable activities: filament severing and pointed-end depolymerization. Multicellular organisms express multiple ADF/cofilin isoforms in a tissue-specific manner, and the vertebrate proteins are grouped into ADFs and cofilins o...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi050933d
更新日期:2005-11-01 00:00:00
abstract::Proteolytic processing of the transmembrane domain of the amyloid precursor protein (APP) is a key component of Alzheimer's disease pathogenesis. Using C-terminally tagged APP derivatives, we have identified by amino-terminal sequencing a novel cleavage site of APP, at Leu-49, distal to the gamma-secretase site. This ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi015794o
更新日期:2002-02-26 00:00:00
abstract::The substrate profiles for three uncharacterized enzymes (YcjM, YcjT, and YcjU) that are expressed from a cluster of 12 genes ( ycjM-W and ompG) of unknown function in Escherichia coli K-12 were determined. Through a comprehensive bioinformatic and steady-state kinetic analysis, the catalytic function of YcjT was dete...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.8b00392
更新日期:2018-05-15 00:00:00
abstract::The unique occurrence of G-quadruplexes in the AT-rich genome of human malaria parasite Plasmodium falciparum provides hints about their critical roles in parasite survival, pathogenesis, and host immune evasion. An intriguing question is whether these noncanonical structures can serve as molecular targets for small m...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.7b00964
更新日期:2017-12-26 00:00:00
abstract::Alpha-synuclein (alphaS) is a lipid-binding synaptic protein of unknown function that is found in an aggregated amyloid fibril form in the intraneuronal Lewy body deposits that are a defining characteristic of Parkinson's disease (PD). Although intrinsically unstructured when free in solution, alphaS adopts a highly h...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi036135+
更新日期:2004-04-27 00:00:00
abstract::The thermal denaturation of caricain (the most alkaline of papain-related proteinases) was studied in acid media. Under all conditions tested, caricain denatured irreversibly following a single first-order reaction that involves simultaneous loss of secondary and tertiary structures. Besides, variation of the rate con...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi991658w
更新日期:1999-11-30 00:00:00
abstract::The dynamics of the enthalpy and volume changes found in the photodissociation of CO from sperm whale carboxymyoglobin and two site-directed mutants in which arginine-45 is replaced by glycine and asparagine are examined by photoacoustic calorimetry. An intermediate is observed whose lifetime at 20 degrees C is 700 ns...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00480a026
更新日期:1990-07-17 00:00:00
abstract::Disruption of the cell membrane by the β-amyloid (Aβ) peptides has been considered as a main mechanism of Alzheimer's disease. The peptide-to-lipid molar ratio (P:L) varies over a broad range biologically. We report here that two of the previously observed Aβ evolution pathways, fibrillation and induction of vesicle f...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.5b00321
更新日期:2015-06-09 00:00:00
abstract::Time-resolved spectroscopic studies of unfolded horse iron(II) cytochrome c have suggested that the imidazole side chains of His26 and His33 bind transiently to the heme iron on microsecond time scales, after photodissociation of a carbon monoxide ligand from the heme. Our studies of four variants of cytochrome c (hor...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi011371a
更新日期:2002-01-29 00:00:00
abstract::Quorum sensing, the ability of bacteria to sense their own population density through the synthesis and detection of small molecule signals, has received a great deal of attention in recent years. Acyl homoserine lactones (AHLs) are a major class of quorum sensing signaling molecules. In nature, some bacteria that do ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi701945j
更新日期:2007-12-18 00:00:00
abstract::When they are translated, steroid receptors are assembled into a multiprotein complex containing hsp90, p23, an immunophilin, and often some hsp70. Some of the receptors, such as that for progesterone, have nuclear localization signals that are functional in the absence of hormone, and they move into the nucleus where...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi970648x
更新日期:1997-06-24 00:00:00
abstract::The nature of the putative general acid His187 in the reaction catalyzed by Escherichia coli uracil DNA glycosylase (UDG) was investigated using X-ray crystallography and NMR spectroscopy. The crystal structures of H187Q UDG, and its complex with uracil, have been solved at 1.40 and 1.60 A resolution, respectively. Th...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi9910880
更新日期:1999-09-14 00:00:00
abstract::At any instant, the human erythrocyte sugar transporter presents at least one sugar export site but multiple sugar import sites. The present study asks whether the transporter also presents more than one sugar exit site. We approached this question by analysis of binding of [3H]cytochalasin B (an export conformer liga...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi015586w
更新日期:2001-12-25 00:00:00
abstract::Steroid receptors define a family of ligand-activated transcription factors. Recent work has demonstrated that the receptors regulate distinct but overlapping gene networks, yet the mechanisms by which they do so remain unclear. We previously determined the microscopic binding energetics for progesterone receptor (PR)...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi2017156
更新日期:2012-01-24 00:00:00
abstract::The interaction of myristoyllysophosphatidylcholine with bovine myelin basic protein at pH 7.4 and 4.5, I = 0.48, has been investigated by a recycling partition equilibrium technique with Bio-Gel P-2 as the gel phase. Important points to emerge from this direct binding study are that it is a monomeric (not micellar) a...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00378a002
更新日期:1987-02-24 00:00:00
abstract::Site-directed mutagenesis has been used to construct three recombinant mutant hemoglobins (rHbs), rHb(beta L105W), rHb(alpha D94A/betaL105W), and rHb(alpha D94A). rHb(beta L105W) is designed to form a new hydrogen bond from beta 105Trp to alpha 94Asp in the alpha(1)beta(2) subunit interface to lower the oxygen binding...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi001115i
更新日期:2000-11-14 00:00:00
abstract::We have previously designed and synthesized small-molecule inhibitors that reduce Vibrio cholerae virulence in vitro by targeting the transcription factor ToxT. Here we report the synthesis and biological activity of derivatives of our previous bicyclic, fatty acid-like inhibitors. All of the synthesized derivatives s...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.8b00667
更新日期:2018-09-25 00:00:00
abstract::Conformational distributions of a four-way DNA junction have been examined by time-resolved fluorescence resonance energy transfer (FRET). A series of dye-labeled junctions were synthesized with donor (fluorescein) and acceptor (tetramethylrhodamine) dyes conjugated to the 5' termini of the duplex arms in all six pair...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00213a014
更新日期:1993-12-21 00:00:00
abstract::The kinetics of activation of Glu-plasminogen (Glu-Pg) and Lys77-Pg by two-chain recombinant tissue plasminogen activator (t-PA) were determined in the presence of isolated protein components of the extracellular matrix (ECM) and compared to activation in the presence of fibrinogen and fibrinogen fragments and in the ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00472a029
更新日期:1990-05-22 00:00:00
abstract::Human apolipoprotein(a) kringle IV type 10 [apo(a) KIV(10)] contains a strong lysine-binding site (LBS) that mediates the interaction of Lp(a) with biological substrates such as fibrin. Mutations in the KIV(10) LBS have been reported in both the rhesus monkey and chimpanzee, and have been proposed to explain the lack ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi048156p
更新日期:2005-01-18 00:00:00
abstract::The crystal structures of the deoxy and carbonmonoxy forms of a distal pocket myoglobin mutant in which valine68(E11) is replaced by threonine have been solved to 2.1- and 2.2-A resolution, respectively. This substitution has been shown previously to cause large decreases in the rate of oxygen binding and to lower the...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00211a016
更新日期:1993-12-07 00:00:00
abstract::The molecular structure of the T4 phage tail sheath protein, gp18, was studied by limited proteolysis, immunoblotting, and immunoelectron microscopy. Gp18 is extremely resistant to proteolysis in the assembled form of either extended or contracted sheaths, but it is readily cleaved by proteases in the monomeric form, ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00473a009
更新日期:1990-05-29 00:00:00