Lateral diffusion in the liquid phases of dimyristoylphosphatidylcholine/cholesterol lipid bilayers: a free volume analysis.

Abstract:

:The technique of fluorescence recovery after photobleaching is used to perform an extensive study of the lateral diffusion of a phospholipid probe in the binary mixture dimyristoylphosphatidylcholine/cholesterol, above the melting temperature of the phospholipid. In the regions of the phase diagram where a single liquid phase exists, diffusion can be quantitatively described by free volume theory, using a modified Macedo-Litovitz hybrid equation. In the liquid-liquid immiscibility region, the temperature dependence of the diffusion coefficient is in excellent agreement with current theories of generalized diffusivities in composite two-phase media. A consistent interpretation of the diffusion data can be provided based essentially on the idea that the primary effect of cholesterol addition to the bilayer is to occupy free volume. On this basis, a general interpretation of the phase behavior of this mixture is also proposed.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Almeida PF,Vaz WL,Thompson TE

doi

10.1021/bi00144a013

subject

Has Abstract

pub_date

1992-07-28 00:00:00

pages

6739-47

issue

29

eissn

0006-2960

issn

1520-4995

journal_volume

31

pub_type

杂志文章
  • Thermodynamics of ferredoxin binding to ferredoxin:NADP+ reductase and the role of water at the complex interface.

    abstract::The association of ferredoxin with ferredoxin:NADP+ reductase (both proteins from spinach chloroplasts) was characterized by isothermal titration calorimetry and fluorescence quenching titration. The formation of the complex is mainly driven by a positive entropy change (delta S = 125 +/- 8 J mol-1 K-1). The calorimet...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00249a019

    authors: Jelesarov I,Bosshard HR

    更新日期:1994-11-15 00:00:00

  • The tyrosine photophysics of a primase-derived peptide are sensitive to the peptide's zinc-bound state: proof that the bacterial primase hypothetical zinc finger sequence binds zinc.

    abstract::A 35-amino acid peptide corresponding to the putative "zinc finger" sequence of primase was prepared to study its zinc binding properties. When zinc was added to the peptide, it was found that the fluorescence quantum yield of the single tyrosine increased by 46% and the average lifetime by 34%. The binding stoichiome...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9612778

    authors: Griep MA,Adkins BJ,Hromas D,Johnson S,Miller J

    更新日期:1997-01-21 00:00:00

  • Mechanistic Insights into R776H Mediated Activation of Epidermal Growth Factor Receptor Kinase.

    abstract::The epidermal growth factor receptor (EGFR) kinase is activated by a variety of mutations in human cancers. R776H is one such recurrent mutation (R752H in another numbering system) in the αC-β4 loop of the tyrosine kinase domain that activates EGFR in the absence of the activating EGF ligand. However, the mechanistic ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00444

    authors: Ruan Z,Kannan N

    更新日期:2015-07-14 00:00:00

  • Human secreted carbonic anhydrase: cDNA cloning, nucleotide sequence, and hybridization histochemistry.

    abstract::Complementary DNA clones coding for the human secreted carbonic anhydrase isozyme (CA VI) have been isolated and their nucleotide sequences determined. These clones identify a 1.45-kb mRNA that is present in high levels in parotid submandibular salivary glands but absent in other tissues such as the sublingual gland, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00216a035

    authors: Aldred P,Fu P,Barrett G,Penschow JD,Wright RD,Coghlan JP,Fernley RT

    更新日期:1991-01-15 00:00:00

  • Posttranslational Chemical Mutagenesis: To Reveal the Role of Noncatalytic Cysteine Residues in Pathogenic Bacterial Phosphatases.

    abstract::The field of chemical site-selective modification of proteins has progressed extensively in recent decades to enable protein functionalization for imaging, drug delivery, and functional studies. In this Perspective, we provide detailed insight into an alternative use of site-selective protein chemistry to probe the ro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00639

    authors: Bertoldo JB,Terenzi H,Hüttelmaier S,Bernardes GJL

    更新日期:2018-10-30 00:00:00

  • Functional dissection of the dimerization and enzymatic activities of Escherichia coli nitrogen regulator II and their regulation by the PII protein.

    abstract::The dimeric two-component system transmitter protein NRII (NtrB) of Escherichia coli, product of glnL (ntrB), controls transcription of nitrogen-regulated genes by catalyzing the phosphorylation and dephosphorylation of the transcription factor NRI (NtrC). Previous studies showed that the PII signal transduction prote...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000794u

    authors: Jiang P,Atkinson MR,Srisawat C,Sun Q,Ninfa AJ

    更新日期:2000-11-07 00:00:00

  • Synthesis of (2R,3R)-erythro- and (2R,3S)-threo-fluoromalate using malic dehydrogenase; stereoselectivity of malic dehydrogenase.

    abstract::3-Fluorooxalacetate is a substrate for malic dehydrogenase. When enzymatic reduction is slower than the rate of epimerization of the two enantiomers, only (2R,3R)-erythro-fluoromalate is formed. Conversely, when a high enzyme level and excess of NADH lead to reduction that is fast relative to the epimerization rate, e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981819g

    authors: Urbauer JL,Bradshaw DE,Cleland WW

    更新日期:1998-12-22 00:00:00

  • O-phosphoserine content of intermediate filament subunits.

    abstract::Purified subunits of intermediate filaments obtained from a variety of tissues and cell types contain O-phosphoserine and, in some cases, smaller amounts of O-phosphothreonine. The O-phosphoserine content was estimated by reaction of performic acid oxidized subunits with methylamine in NaOH. Decamin of BHK-21 and CHO ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00530a030

    authors: Steinert PM,Wantz ML,Idler WW

    更新日期:1982-01-05 00:00:00

  • Assignment of spectral substructures to pigment-binding sites in higher plant light-harvesting complex LHC-II.

    abstract::The trimeric main light-harvesting complex (LHC-II) is the only antenna complex of higher plants of which a high-resolution 3D structure has been obtained (Kühlbrandt, W., Wang, D., and Fujiyoshi, Y. (1994) Nature 367, 614-621) and which can be refolded in vitro from its components. Four different recombinant forms of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi015875k

    authors: Rogl H,Schödel R,Lokstein H,Kühlbrandt W,Schubert A

    更新日期:2002-02-19 00:00:00

  • Origin of product selectivity in a prenyl transfer reaction from the same intermediate: exploration of multiple FtmPT1-catalyzed prenyl transfer pathways.

    abstract::FtmPT1 is a fungal indole prenyltransferase that catalyzes the reaction of tryptophan derivatives with dimethylallyl pyrophosphate to form various biologically active compounds. Herein, we describe detailed studies of FtmPT1 catalysis involving dimethylallyl pyrophosphate and Brevianamide F following the native pathwa...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500747z

    authors: Pan LL,Yang Y,Merz KM Jr

    更新日期:2014-09-30 00:00:00

  • Mechanism of irreversible inhibition of O2 evolution in photosystem II by Tris(hydroxymethyl)aminomethane.

    abstract::The dark reaction of tris(hydroxymethyl)aminomethane (Tris) with the O2-evolving center of photosystem II (PSII) in the S1 state causes irreversible inhibition of O2 evolution. Similar inhibition is observed for several other amines: NH3, CH3NH2, (CH3)2NH, ethanolamine, and 2-amino-2-ethyl-1,3-propanediol. In PSII mem...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00246a003

    authors: Rickert KW,Sears J,Beck WF,Brudvig GW

    更新日期:1991-08-13 00:00:00

  • Active site characteristics of CYP4B1 probed with aromatic ligands.

    abstract::The active site topography of rabbit CYP4B1 has been studied relative to CYP2B1 and CYP102 using a variety of aromatic probe substrates. Oxidation of the prochiral substrate cumene by CYP4B1, but not CYP2B1 or CYP102, resulted in the formation of the thermodynamically disfavored omega-hydroxy metabolite, 2-phenyl-1-pr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010395e

    authors: Henne KR,Fisher MB,Iyer KR,Lang DH,Trager WF,Rettie AE

    更新日期:2001-07-24 00:00:00

  • Topographical localization of peroxisomal acyl-CoA ligases: differential localization of palmitoyl-CoA and lignoceroyl-CoA ligases.

    abstract::We found that peroxisomal lignoceroyl-CoA ligase, like palmitoyl-CoA ligase, is present in the peroxisomal membrane whereas the peroxisomal beta-oxidation enzyme system is localized in the matrix. To further define the role of peroxisomal acyl-CoA ligases (membrane component) in providing acyl-CoA for peroxisomal beta...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00468a027

    authors: Lazo O,Contreras M,Singh I

    更新日期:1990-04-24 00:00:00

  • Sulfated glycoproteins, glycolipids, and glycosaminoglycans from synaptic plasma and myelin membranes: isolation and characterization of sulfated glycopeptides.

    abstract::In this report we provide biochemical evidence that a highly purified synaptic plasma membrane fraction derived from rat brain, after intraventricular injection of 35S-labeled sodium sulfate, is enriched in a number of large sulfated glycoproteins compared with a purified myelin fraction studied concurrently. A fracti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00670a005

    authors: Simpson DL,Thorne DR,Loch HH

    更新日期:1976-12-14 00:00:00

  • Crystal structures of potent thiol-based inhibitors bound to carboxypeptidase B.

    abstract::This paper presents the crystal structure of porcine pancreatic carboxypeptidase B (pp-CpB) in complex with a variety of thiol-based inhibitors that were developed as antagonists of activated thrombin-activatable fibrinolysis inhibitor (TAFIa). Recent studies have indicated that a selective inhibitor of TAFIa could en...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0501941

    authors: Adler M,Bryant J,Buckman B,Islam I,Larsen B,Finster S,Kent L,May K,Mohan R,Yuan S,Whitlow M

    更新日期:2005-07-05 00:00:00

  • Methyl-Based NMR Spectroscopy Methods for Uncovering Structural Dynamics in Large Proteins and Protein Complexes.

    abstract::NMR spectroscopy is particularly adept at site-specifically monitoring dynamic processes in proteins, such as protein folding, domain movements, ligand binding, and side-chain rotations. By coupling the favorable spectroscopic properties of highly dynamic side-chain methyl groups with transverse-relaxation-optimized s...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.8b00953

    authors: Boswell ZK,Latham MP

    更新日期:2019-01-22 00:00:00

  • Cofactor-directed reversible denaturation pathways: the cofactor-stabilized Escherichia coli aspartate aminotransferase homodimer unfolds through a pathway that differs from that of the apoenzyme.

    abstract::While the urea-mediated unfolding pathway of the Escherichia coli aspartate aminotransferase (eAATase) homodimer proceeds through a reversible three-state process with a partially folded dimeric intermediate, D D* 2U (E. Deu and J. F. Kirsch, accompanying paper), that of a cofactor-stabilized form differs. Pyridoxal p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi602632d

    authors: Deu E,Kirsch JF

    更新日期:2007-05-15 00:00:00

  • 1-Aminocyclopropanephosphonate: time-dependent inactivation of 1-aminocyclopropanecarboxylate deaminase and Bacillus stearothermophilus alanine racemase by slow dissociation behavior.

    abstract::1-Aminocyclopropanephosphonate (ACPP) was synthesized, and its effects on the pyridoxal 5'-phosphate linked enzymes 1-aminocyclopropanecarboxylate (ACPC) deaminase from Pseudomonas sp. ACPC and alanine racemase from Bacillus stearothermophilus were studied. ACPP was found to be a potent inhibitor of both enzymes with ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00386a025

    authors: Erion MD,Walsh CT

    更新日期:1987-06-16 00:00:00

  • The N-terminus of the fragile X mental retardation protein contains a novel domain involved in dimerization and RNA binding.

    abstract::Fragile X syndrome, the most common cause of inherited mental retardation, is caused by the absence of the fragile X mental retardation protein (FMRP). The emerging picture is that FMRP is involved in repression of translation through a complex network of protein-protein and protein-RNA interactions. Very little struc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034909g

    authors: Adinolfi S,Ramos A,Martin SR,Dal Piaz F,Pucci P,Bardoni B,Mandel JL,Pastore A

    更新日期:2003-09-09 00:00:00

  • Interaction of hemoglobin and its component alpha and beta chains with band 3 protein.

    abstract::The equilibrium binding of hemoglobin to isolated band 3 protein exhibited positive cooperativity [Hill coefficient = 1.65 +/- 0.1; total number of binding sites at pH 6.6 in 5 mM sodium phosphate buffer = 32 500 +/- 940 pmol/mg; Ka = (3.0 +/- 0.5) X 10(5) M-1]. The binding was reversible and ionic in nature as the bo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00359a054

    authors: Premachandra BR

    更新日期:1986-06-03 00:00:00

  • Protein dissection of the antiparallel coiled coil from Escherichia coli seryl tRNA synthetase.

    abstract::The alpha-helices of coiled-coil proteins are predominantly parallel, in contrast to the general preference for an antiparallel orientation of interacting alpha-helices found in globular proteins. One intriguing exception is the antiparallel, two-stranded coiled coil comprising the long helical arm of the bacterial se...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962391t

    authors: Oakley MG,Kim PS

    更新日期:1997-03-04 00:00:00

  • CYP4 isozyme specificity and the relationship between omega-hydroxylation and terminal desaturation of valproic acid.

    abstract::The cytochrome P450-dependent terminal desaturation of valproic acid (VPA) is of both toxicological and mechanistic interest because the product, 4-ene-VPA, is a more potent hepatotoxin than the parent compound and its generation represents a rather novel metabolic reaction for the cytochrome P450 system. In the prese...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00024a013

    authors: Rettie AE,Sheffels PR,Korzekwa KR,Gonzalez FJ,Philpot RM,Baillie TA

    更新日期:1995-06-20 00:00:00

  • Maltosyl isothiocyanate: an affinity label for the glucose transporter of the human erythrocyte membrane. 1. Inhibition of glucose transport.

    abstract::Maltosyl isothiocyanate (MITC) has been synthesized from maltose with an overall yield of 88%. It has been found to be a potent irreversible inhibitor of zero trans influx of glucose with human erythrocytes. Kinetic analysis of glucose transport after treatment of erythrocytes with MITC revealed that VT was diminished...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00547a025

    authors: Mullins RE,Langdon RG

    更新日期:1980-03-18 00:00:00

  • Ligand-induced variations in the reactivity of thio groups of the alpha-subunit of the acetylcholine receptor from Torpedo californica.

    abstract::We have studied alkylation of the acetylcholine receptor by N-[3H]ethylmaleimide ([3H]NEM) under various conditions. The radiolabeled preparations were submitted to sodium dodecyl sulfate-polyacrylamide gel electrophoresis to separate the receptor complex into subunits, and the incorporation of 3H into each type of ch...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00306a001

    authors: de Souza Otero A,Hamilton SL

    更新日期:1984-05-22 00:00:00

  • Sequence-specific solution structure of d-GGTACGCGTACC.

    abstract::Complete resonance assignments of nonexchangeable base protons and sugar protons in d-GGTACGCGTACC at 500 MHz have been obtained by two-dimensional correlated spectroscopy (COSY) and nuclear Overhauser enhancement spectroscopy (NOESY). The characteristic phase-sensitive multiplet patterns of the ntrasugar cross peaks ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00410a050

    authors: Chary KV,Hosur RV,Govil G,Chen CQ,Miles HT

    更新日期:1988-05-17 00:00:00

  • Chromatin structure of the chicken lysozyme gene domain as determined by chromatin fractionation and micrococcal nuclease digestion.

    abstract::The chromatin structure encompassing the lysozyme gene domain in hen oviduct nuclei was studied by measuring the partitioning of coding and flanking sequences during chromatin fractionation and by analyzing the nucleosome repeat in response to micrococcal nuclease digestion. Following micrococcal nuclease digestion, n...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00350a033

    authors: Strätling WH,Dölle A,Sippel AE

    更新日期:1986-01-28 00:00:00

  • Chromatin-bound protease: degradation of chromosomal proteins under chromatin dissociation conditions.

    abstract::A chromatin-bound protease, active in 2 M NaCl-5 M urea or 5 M urea alone, was demonstrated in rat liver, kidney, testes, brain, rabbit bone marrow, chicken reticulocyte, and Ehrlich ascites chromatin. Chicken erythrocyte chromatin did not possess any detectable proteolytic activity in salt and urea. The proteolytic a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00646a028

    authors: Carter DB,Chae CB

    更新日期:1976-01-13 00:00:00

  • Probing the Flexibility of the Catalytic Nucleophile in the Lyase Catalytic Pocket of Human DNA Polymerase β with Unnatural Lysine Analogues.

    abstract::DNA polymerase β (Pol β) is a key enzyme in mammalian base excision repair (BER), contributing stepwise 5'-deoxyribose phosphate (dRP) lyase and "gap-filling" DNA polymerase activities. The lyase reaction is believed to occur via a β-elimination reaction following the formation of a Schiff base between the dRP group a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00807

    authors: Daskalova SM,Bhattacharya C,Dedkova LM,Hecht SM

    更新日期:2017-01-24 00:00:00

  • Inactivation of factor VIII by factor IXa.

    abstract::Factor VIII (FVIII) is the nonproteolytic cofactor for FIXa in the tenase complex of blood coagulation. FVIII is proteolytically activated by thrombin and FXa in vitro to form a heterotrimer with full procoagulant activity. Activated protein C inactivates thrombin-activated FVIII through cleavage adjacent to position ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00125a022

    authors: O'Brien DP,Johnson D,Byfield P,Tuddenham EG

    更新日期:1992-03-17 00:00:00

  • Correlations of crystal structures of DNA oligonucleotides with enantioselective recognition by Rh(phen)2phi3+: probes of DNA propeller twisting in solution.

    abstract::Rh(phen)2phi3+ (phen = 1,10-phenanthroline; phi = 9,10-phenanthrenequinone diimine) avidly binds to DNA via intercalation from the major groove and upon photoactivation produces strand scission with single base 5' asymmetry. Enantiomers of Rh(phen)2phi3+, which lack hydrogen-bonding substituents in ancillary positions...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00180a005

    authors: Campisi D,Morii T,Barton JK

    更新日期:1994-04-12 00:00:00