Nonadditive expression and parent-of-origin effects identified by microarray and allele-specific expression profiling of maize endosperm.

Abstract:

:Plant endosperm cells have a nuclear ratio of two maternal genomes to one paternal genome. This 2 to 1 dosage relationship provides a unique system for studying the additivity of gene expression levels in reciprocal hybrids. A combination of microarray profiling and allele-specific expression analysis was performed using RNA isolated from endosperm tissues of maize (Zea mays) inbred lines B73 and Mo17 and their reciprocal hybrids at two developmental stages, 13 and 19 d after pollination. The majority of genes exhibited additive expression in reciprocal hybrids based on microarray analyses. However, a substantial number of genes exhibited nonadditive expression patterns, including maternal like, paternal like, high parent like, low parent like, and expression patterns outside the range of the parental inbreds. The frequency of hybrid expression patterns outside of the parental range in maize endosperm tissue is much higher than that observed for vegetative tissues. For a set of 90 genes, allele-specific expression assays were employed to monitor allelic bias and regulatory variation. Eight of these genes exhibited evidence for maternally or paternally biased expression at multiple stages of endosperm development and are potential examples of differential imprinting. Our data indicate that parental effects on gene expression are much stronger in endosperm than in vegetative tissues.

journal_name

Plant Physiol

journal_title

Plant physiology

authors

Stupar RM,Hermanson PJ,Springer NM

doi

10.1104/pp.107.101428

subject

Has Abstract

pub_date

2007-10-01 00:00:00

pages

411-25

issue

2

eissn

0032-0889

issn

1532-2548

pii

pp.107.101428

journal_volume

145

pub_type

杂志文章
  • Mycorrhiza-Triggered Transcriptomic and Metabolomic Networks Impinge on Herbivore Fitness.

    abstract::Symbioses between plants and mycorrhizal fungi are ubiquitous in ecosystems and strengthen the plants' defense against aboveground herbivores. Here, we studied the underlying regulatory networks and biochemical mechanisms in leaves induced by ectomycorrhizae that modify herbivore interactions. Feeding damage and ovipo...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.17.01810

    authors: Kaling M,Schmidt A,Moritz F,Rosenkranz M,Witting M,Kasper K,Janz D,Schmitt-Kopplin P,Schnitzler JP,Polle A

    更新日期:2018-04-01 00:00:00

  • Regulation of Sucrose Transporters and Phloem Loading in Response to Environmental Cues.

    abstract::Suc transporters (SUTs) play a key role in the allocation and partitioning of photosynthetically fixed carbon in plants. While a function could be assigned to many members of the SUT family, almost no information is available on their regulation. Here, the transcriptional regulation of SUTs in response to various envi...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.17.01088

    authors: Xu Q,Chen S,Yunjuan R,Chen S,Liesche J

    更新日期:2018-01-01 00:00:00

  • A simple procedure to overcome polyethelene glycol toxicity on whole plants.

    abstract::A procedure is described that can be used to minimize toxic effects of polyethylene glycol (PEG) to plants. The procedure is based on recycling nutrient solutions containing PEG-6000 through two plant cultures. Tomato plants grown in -0.3 megapascals PEG solutions used after two growth cycles exhibited minimal toxic e...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.79.2.559

    authors: Plaut Z,Federman E

    更新日期:1985-10-01 00:00:00

  • Global characterization of cell-specific gene expression through fluorescence-activated sorting of nuclei.

    abstract::We describe a simple and highly effective means for global identification of genes that are expressed within specific cell types within complex tissues. It involves transgenic expression of nuclear-targeted green fluorescent protein in a cell-type-specific manner. The fluorescent nuclei are then purified from homogena...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.107.115246

    authors: Zhang C,Barthelson RA,Lambert GM,Galbraith DW

    更新日期:2008-05-01 00:00:00

  • Effects of the gibberellin biosynthetic inhibitor uniconazol on mutants of Arabidopsis.

    abstract::Using the gibberellin (GA) biosynthetic inhibitor Uniconazol, we determined that det1, a mutant that no longer requires light to be germinated, still requires GA synthesis for germination. This result suggests that dark inhibition of germination in Arabidopsis may be due to inhibition of GA synthesis by the DET1 gene ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.97.2.736

    authors: Nambara E,Akazawa T,McCourt P

    更新日期:1991-10-01 00:00:00

  • Large root cortical cell size improves drought tolerance in maize.

    abstract::The objective of this study was to test the hypothesis that large cortical cell size (CCS) would improve drought tolerance by reducing root metabolic costs. Maize (Zea mays) lines contrasting in root CCS measured as cross-sectional area were grown under well-watered and water-stressed conditions in greenhouse mesocosm...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.114.250449

    authors: Chimungu JG,Brown KM,Lynch JP

    更新日期:2014-12-01 00:00:00

  • New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating.

    abstract::Female control of nonrandom mating has never been genetically established, despite being linked to inbreeding depression and sexual selection. In order to map the loci that control female-mediated nonrandom mating, we constructed a new advanced intercross recombinant inbred line (RIL) population derived from a cross b...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.113.233213

    authors: Fitz Gerald JN,Carlson AL,Smith E,Maloof JN,Weigel D,Chory J,Borevitz JO,Swanson RJ

    更新日期:2014-05-01 00:00:00

  • ECHIDNA protein impacts on male fertility in Arabidopsis by mediating trans-Golgi network secretory trafficking during anther and pollen development.

    abstract::The trans-Golgi network (TGN) plays a central role in cellular secretion and has been implicated in sorting cargo destined for the plasma membrane. Previously, the Arabidopsis (Arabidopsis thaliana) echidna (ech) mutant was shown to exhibit a dwarf phenotype due to impaired cell expansion. However, ech also has a prev...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.113.227769

    authors: Fan X,Yang C,Klisch D,Ferguson A,Bhaellero RP,Niu X,Wilson ZA

    更新日期:2014-03-01 00:00:00

  • Identification of hydroxypyruvate and glyoxylate reductases in maize leaves.

    abstract::At least two hydroxypyruvate reductases (HPRs), differing in specificity for NAD(P)H and (presumably) utilizing glyoxylate as a secondary substrate, were identified by fractionation of crude maize leaf extracts with ammonium sulfate. The NADH-preferring enzyme, which most probably represented peroxisomal HPR, was prec...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.91.1.278

    authors: Kleczkowski LA,Edwards GE

    更新日期:1989-09-01 00:00:00

  • Development of Enzymes Involved in Photosynthetic Carbon Assimilation in Greening Seedlings of Maize (Zea mays).

    abstract::Upon illumination of dark-grown maize seedlings (5 days old) with incandescent light, there occurred a nearly simultaneous increase, after a certain lag period, in the activities of enzymes engaged in the C(4) pathway and the Calvin-Benson cycle. The light-induced biosynthesis of chlorophyll (a and b) precedes the inc...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.65.2.198

    authors: Kobayashi H,Asami S,Akazawa T

    更新日期:1980-02-01 00:00:00

  • Measuring intracellular ca levels in plant cells using the fluorescent probes, indo-1 and fura-2 : progress and prospects.

    abstract::Recent advances in the development of methods for measuring cytoplasmic Ca(2+) levels in higher plant cells are discussed. Emphasis is placed on the new generation of Ca(2+)-sensitive fluorescent dyes particularly fura-2 and indo-1. These dyes offer many advantages for the measurement of cytosolic Ca(2+) levels. They ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.93.3.841

    authors: Bush DS,Jones RL

    更新日期:1990-07-01 00:00:00

  • The physical basis of gravity stimulus nullification by clinostat rotation.

    abstract::The question of how rotation on a horizontal axis clinostat removes plants from the influence of the gravitational stimulus is answered. It is shown that appropriate horizontal axis clinostat rotation restricts the fall of intracellular particles to a quasi-circular path such that the position of the particle remains ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.47.6.756

    authors: Dedolph RR,Dipert MH

    更新日期:1971-06-01 00:00:00

  • Identification of AtNDI1, an internal non-phosphorylating NAD(P)H dehydrogenase in Arabidopsis mitochondria.

    abstract::Plant mitochondria contain non-phosphorylating NAD(P)H dehydrogenases (DHs) that are not found in animal mitochondria. The physiological function, substrate specificity, and location of enzymes within this family have yet to be conclusively determined. We have linked genome sequence information to protein and biochemi...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.103.029363

    authors: Moore CS,Cook-Johnson RJ,Rudhe C,Whelan J,Day DA,Wiskich JT,Soole KL

    更新日期:2003-12-01 00:00:00

  • Isolation and Freezing Tolerances of Mesophyll Cells from Cold-hardened and Nonhardened Winter Rye.

    abstract::A method is described for the release of large quantities of mesophyll cells from leaves of both cold-hardened and nonhardened winter rye seedlings by a combination of enzymic and physical maceration. Such preparations usually contain a certain percentage of nonviable cells and are thus not suitable for quantitative b...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.67.5.906

    authors: Singh J

    更新日期:1981-05-01 00:00:00

  • Chilling-Induced Lipid Degradation in Cucumber (Cucumis sativa L. cv Hybrid C) Fruit.

    abstract::Chilling at 4 degrees C in the dark induced lipid degradation in cucumber (Cucumis sativa L.) fruit upon rewarming at 14 degrees C. Rates of ethane evolution by fruits rewarmed after 3 days of chilling were up to four-fold higher than those evolved by unchilled (14 degrees C) fruits (0.02-0.05 picomoles gram fresh wei...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.90.3.1049

    authors: Parkin KL,Kuo SJ

    更新日期:1989-07-01 00:00:00

  • Requirement for the H phosphoprotein in photosystem II of Chlamydomonas reinhardtii.

    abstract::To dissect the expression of the psbB gene cluster of the Chlamydomonas reinhardtii chloroplast genome and to assess the role of the photosystem II H-phosphoprotein (PSII-H) in the biogenesis and/or stabilization of PSII, an aadA gene cassette conferring spectinomycin resistance was employed for mutagenesis. Disruptio...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.113.4.1359

    authors: Summer EJ,Schmid VH,Bruns BU,Schmidt GW

    更新日期:1997-04-01 00:00:00

  • New photoresponses of phycomyces.

    abstract::The influence of light on asexual fruiting and mycelial growth of Phycomyces blakesleeanus Burgeff was studied by means of fruiting body counts and size measurements in cultures on solid media under varied incubation conditions. Five types of photoresponses were shown by ATCC Strain 8743a: (a) photoinduction of giant ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.51.3.570

    authors: Thornton RM

    更新日期:1973-03-01 00:00:00

  • An arginyl-transfer ribonucleic Acid protein transferase from cereal embryos.

    abstract::Embryos from rice (Oryza sativa L. var. Bluebonnet) and wheat (Triticum aestivum L.) contain an aminoacyl-tRNA protein transferase which transfers arginine from arginyl-tRNA to the N terminus of a protein acceptor. The activity was measured in vitro in a reaction mixture containing embryo supernatant fraction, buffer,...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.52.1.13

    authors: Manahan CO,App AA

    更新日期:1973-07-01 00:00:00

  • Different Alleles of a Gene Encoding Leucoanthocyanidin Reductase (PaLAR3) Influence Resistance against the Fungus Heterobasidion parviporum in Picea abies.

    abstract::Despite the fact that fungal diseases are a growing menace for conifers in modern silviculture, only a very limited number of molecular markers for pathogen resistance have been validated in conifer species. A previous genetic study indicated that the resistance of Norway spruce (Picea abies) to Heterobasidion annosum...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.16.00685

    authors: Nemesio-Gorriz M,Hammerbacher A,Ihrmark K,Källman T,Olson Å,Lascoux M,Stenlid J,Gershenzon J,Elfstrand M

    更新日期:2016-08-01 00:00:00

  • CHOTTO1, a putative double APETALA2 repeat transcription factor, is involved in abscisic acid-mediated repression of gibberellin biosynthesis during seed germination in Arabidopsis.

    abstract::The phytohormones abscisic acid (ABA) and gibberellins (GAs) are the primary signals that regulate seed dormancy and germination. In this study, we investigated the role of a double APETALA2 repeat transcription factor, CHOTTO1 (CHO1), in seed dormancy, germination, and phytohormone metabolism of Arabidopsis (Arabidop...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.109.142018

    authors: Yano R,Kanno Y,Jikumaru Y,Nakabayashi K,Kamiya Y,Nambara E

    更新日期:2009-10-01 00:00:00

  • Callose induction in cowpea by uridine diphosphate glucose and calcium phosphate-boric Acid treatments.

    abstract::Calcium phosphate-boric acid treatments and UDP-glucose both elicited aniline blue fluorescent, periodic acid-Schiff's reagent-resistant, deposits in association with the cell walls of cowpea (Vigna sinensis [Torner] Savi cv. Early Ramshorn) tissue. Those deposits induced by calcium phosphateboric acid treatment ultra...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.69.2.366

    authors: Tighe DM,Heath MC

    更新日期:1982-02-01 00:00:00

  • Isolation and characterization of soluble boron complexes in higher plants. The mechanism of phloem mobility of boron.

    abstract::Boron (B) polyol complexes have been isolated and characterized from the phloem sap of celery (Apium graveolens L.) and the extrafloral nectar of peach (Prunus persica L.). In celery the direct analysis of untreated phloem sap by matrix-assisted laser desorption-Fourier transform mass spectrometry, with verification b...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.113.2.649

    authors: Hu H,Penn SG,Lebrilla CB,Brown PH

    更新日期:1997-02-01 00:00:00

  • A Seed Storage Protein with Possible Self-Affinity through Lectin-Like Binding.

    abstract::The primary storage protein of oat (Avena sativa L.) seeds, globulin, was shown to have a specific carbohydrate-binding activity. The globulin was capable of hemagglutinating rabbit red blood cells and this hemagglutination was inhibited by the beta-glucan, laminarin, as well as by carbohydrate which had been cleaved ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.74.3.675

    authors: Langston-Unkefer PJ,Gade W

    更新日期:1984-03-01 00:00:00

  • Metabolism of 5-methylthioribose to methionine.

    abstract::During ethylene biosynthesis, the H(3)CS- group of S-adenosylmethionine is released as 5'-methylthioadenosine, which is recycled to methionine via 5-methylthioribose (MTR). In mungbean hypocotyls and cell-free extracts of avocado, [(14)C]MTR was converted into labeled methionine via 2-keto-4-methylthiobutyric acid (KM...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.84.2.277

    authors: Miyazaki JH,Yang SF

    更新日期:1987-06-01 00:00:00

  • Sucrose phosphate synthase, a key enzyme for sucrose biosynthesis in plants: protein purification from corn leaves and immunological detection.

    abstract::We have purified the protein for the enzyme sucrose phosphate synthase (SPS) from corn (Zea mays) leaves. Partially purified SPS protein was used to generate specific monoclonal antibodies. The following immunoaffinity chromatography allowed the isolation of pure SPS protein. The apparent molecular mass of the SPS pol...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.96.2.473

    authors: Bruneau JM,Worrell AC,Cambou B,Lando D,Voelker TA

    更新日期:1991-06-01 00:00:00

  • Effects of High Light Stress on Carotenoid-Deficient Chloroplasts in Pisum sativum.

    abstract::The effects of high light stress on chloroplast ultrastructure and protein and mRNA composition were investigated in carotenoid-deficient peas (Pisum sativum, L.). In low light, the thylakoid membrane polypeptide pattern was altered, with several prominent chlorophyll-binding proteins present in diminished amounts. Th...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.94.4.1663

    authors: Sagar AD,Briggs WR

    更新日期:1990-12-01 00:00:00

  • Expression of a Maize Ubiquitin Gene Promoter-bar Chimeric Gene in Transgenic Rice Plants.

    abstract::We have constructed a chimeric gene consisting of the promoter, first exon, and first intron of a maize ubiquitin gene (Ubi-1) and the coding sequence of the bar gene from Streptomyces hygroscopicus. This construct was transferred into rice (Oryza sativa L.) protoplasts via electroporation, and 10 plants were regenera...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.100.3.1503

    authors: Toki S,Takamatsu S,Nojiri C,Ooba S,Anzai H,Iwata M,Christensen AH,Quail PH,Uchimiya H

    更新日期:1992-11-01 00:00:00

  • In Vivo Photomodification of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase Holoenzyme by Ultraviolet-B Radiation (Formation of a 66-Kilodalton Variant of the Large Subunit).

    abstract::Increased levels of solar ultraviolet (290-320 nm) (UV-B) radiation could have profound effects on plant proteins because the aromatic amino acids in proteins absorb strongly in this spectral region. We have investigated the effects of UV-B radiation on plant proteins and have observed a novel 66-kD protein. This prod...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.109.1.221

    authors: Wilson MI,Ghosh S,Gerhardt KE,Holland N,Babu TS,Edelman M,Dumbroff EB,Greenberg BM

    更新日期:1995-09-01 00:00:00

  • Hydrotropism interacts with gravitropism by degrading amyloplasts in seedling roots of Arabidopsis and radish.

    abstract::In response to a moisture gradient, roots exhibit hydrotropism to control the orientation of their growth. To exhibit hydrotropism, however, they must overcome the gravitropism that is dominant on Earth. We found that moisture gradient or water stress caused immediate degradation of the starch anchors, amyloplasts, in...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.102.018853

    authors: Takahashi N,Yamazaki Y,Kobayashi A,Higashitani A,Takahashi H

    更新日期:2003-06-01 00:00:00

  • The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.

    abstract::The ambient light environment controls many aspects of plant development throughout a plant's life cycle. Such complex control is achieved because a key repressor of light signaling, the Arabidopsis (Arabidopsis thaliana) COP1/SPA E3 ubiquitin ligase causes the degradation of multiple regulators of endogenous developm...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.17.01207

    authors: Ordoñez-Herrera N,Trimborn L,Menje M,Henschel M,Robers L,Kaufholdt D,Hänsch R,Adrian J,Ponnu J,Hoecker U

    更新日期:2018-02-01 00:00:00