Electron-transferring flavoprotein from pig kidney: flavin analogue studies.

Abstract:

:Apo-electron-transferring flavoprotein from pig kidney (apo-ETF) has been prepared by an acid ammonium sulfate procedure and reconstituted with FAD analogues to probe the flavin binding site. The 8-position of the bound flavin is accessible to solvent as judged by the reaction of 8-Cl-FAD-ETF with sodium sulfide and thiophenol. A series of 8-alkylmercapto-FAD analogues containing increasingly bulky substituents bind tightly to apo-ETF and can be reduced to the dihydroflavin level by octanoyl-CoA in the presence of catalytic levels of the medium-chain acyl-CoA dehydrogenase. Bulky substituents severely slow the rate of these interflavin electron-transfer reactions. In the case of the 8-cyclohexylmercapto derivative, this decrease reflects a sizable increase in the Km for ETF (approximately 14-fold) with only a 20% decrease in Vmax. Reduction of all of these 8-substituted derivatives involves the accumulation of ETF anion radical intermediates. Dihydro-5-deaza-FAD dehydrogenase, unlike the corresponding 1-deazaflavin substitution, is unable to reduce native ETF despite a strongly favorable redox potential difference. These results, together with data from the native proteins, are consistent with obligatory 1-electron transfer between dehydrogenase and ETF possibly involving the exposed dimethylbenzene edge of ETF. Irradiation of apo-ETF reconstituted with the photoaffinity analogue 8-azidoflavin leads to approximately 10% covalent incorporation of the flavin. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis of apo-ETF labeled with tritiated 8-azido-FAD shows preferential labeling of the smaller subunit (88%, Mr 30,000 subunit; 12%, Mr 33,000 subunit).(ABSTRACT TRUNCATED AT 250 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Gorelick RJ,Thorpe C

doi

10.1021/bi00370a050

subject

Has Abstract

pub_date

1986-11-04 00:00:00

pages

7092-8

issue

22

eissn

0006-2960

issn

1520-4995

journal_volume

25

pub_type

杂志文章
  • Synthetic charybdotoxin-iberiotoxin chimeric peptides define toxin binding sites on calcium-activated and voltage-dependent potassium channels.

    abstract::Charybdotoxin (ChTX) and iberiotoxin (IbTX) are highly charged peptidyl toxins which exhibit 68% sequence identity and share a similar three-dimensional structure. Despite these structural similarities, IbTX and ChTX differ in their selectivity for two types of potassium channels; large conductance calcium-activated p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00060a030

    authors: Giangiacomo KM,Sugg EE,Garcia-Calvo M,Leonard RJ,McManus OB,Kaczorowski GJ,Garcia ML

    更新日期:1993-03-09 00:00:00

  • Low permeability of liposomal membranes composed of bipolar tetraether lipids from thermoacidophilic archaebacterium Sulfolobus acidocaldarius.

    abstract::The physical origin of the extremely high thermal stability of tetraether liposomes composed of the polar lipid fraction E (PLFE) from the thermoacidophilic archaebacterium Sulfolobus acidocaldarius has been investigated. The leakage rate of trapped 5, 6-carboxyfluorescein (5(6)CF) and the proton permeability in PLFE ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972163e

    authors: Komatsu H,Chong PL

    更新日期:1998-01-06 00:00:00

  • Interspersion of mouse satellite deoxyribonucleic acid sequences.

    abstract::DNA sequences with homology to the major (A + T)-rich mouse satellite component were localized in CsCl gradients by hybridization with a labeled satellite cRNA probe. Although, as expected, most of the hybridization was to DNA in the satellite-rich shoulder, substantial radioactive cRNA hybridized with DNA from denser...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00518a025

    authors: Stambrook PJ

    更新日期:1981-07-21 00:00:00

  • Photochemical cross-linking of tRNA1Arg to the 30S ribosomal subunit using aryl azide reagents attached to the anticodon loop.

    abstract::The 2-thiocytidine residue at position 32 of tRNA1Arg from Escherichia coli was modified specifically with three photoaffinity reagents of different lengths, and the corresponding N-acetylarginyl-tRNA1Arg derivatives were cross-linked to the P site of E. coli 70S ribosomes by irradiation. Covalent attachment was depen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00339a011

    authors: Chen JK,Franke LA,Hixson SS,Zimmermann RA

    更新日期:1985-08-27 00:00:00

  • DNA degradation by bleomycin: evidence for 2'R-proton abstraction and for C-O bond cleavage accompanying base propenal formation.

    abstract::Reaction of poly(dA-[2'S-3H]dU) with activated bleomycin yields [3H]uracil propenal that completely retains the tritium label. In contrast, we have previously shown that reaction of poly(dA-[2'R-3H]dU) with activated bleomycin affords unlabeled uracil propenal [Wu, J. C., Kozarich, J. W., & Stubbe, J. (1983) J. Biol. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00369a037

    authors: Ajmera S,Wu JC,Worth L Jr,Rabow LE,Stubbe J,Kozarich JW

    更新日期:1986-10-21 00:00:00

  • Movement of the iron-sulfur head domain of cytochrome bc(1) transiently opens the catalytic Q(o) site for reaction with oxygen.

    abstract::Cytochrome bc(1), a key enzyme of biological energy conversion, generates or uses a proton motive force through the Q cycle that operates within the two chains of cofactors that embed two catalytic quinone oxidation/reduction sites, the Q(o) site and the Q(i) site. The Q(o) site relies on the joint action of two cofac...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801207f

    authors: Borek A,Sarewicz M,Osyczka A

    更新日期:2008-11-25 00:00:00

  • Effect of the carbohydrate moiety on the secondary structure of beta 2-glycoprotein. I. Implications for the biosynthesis and folding of glycoproteins.

    abstract::By use of six highly purified exoglycosidases with well-defined specificity, the oligosaccharide units of human plasma beta 2-glycoprotein I (beta 2I) were modified by sequential enzymatic degradation. The released monosaccharides (NeuAc, Gal, GlcNAc, and Man) were quantified, and the carbohydrate compositions of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00478a020

    authors: Walsh MT,Watzlawick H,Putnam FW,Schmid K,Brossmer R

    更新日期:1990-07-03 00:00:00

  • Cytochrome b562 variants: a library for examining redox potential evolution.

    abstract::A general understanding of how cytochromes evolve within a fixed structure to optimize redox potential for specific bioenergetic processes does not exist. Toward this end, a library approach is used to investigate the range and distribution of redox potential which occurs when all sequence space available through muta...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0001675

    authors: Springs SL,Bass SE,McLendon GL

    更新日期:2000-05-23 00:00:00

  • Akt-dependent antiapoptotic action of insulin is sensitive to farnesyltransferase inhibitor.

    abstract::CHO cells expressing the human insulin receptors (IR) were used to evaluate the effect of the potent farnesyltransferase inhibitor, manumycin, on insulin antiapoptotic function. Cell treatment with manumycin blocked insulin's ability to suppress pro-apoptotic caspase-3 activity which led to time-dependent proteolytic ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000995y

    authors: Park D,Pandey SK,Maksimova E,Kole S,Bernier M

    更新日期:2000-10-17 00:00:00

  • Two-site binding of beta-cyclodextrin to the Alzheimer Abeta(1-40) peptide measured with combined PFG-NMR diffusion and induced chemical shifts.

    abstract::The interactions of Alzheimer's amyloid beta-peptide with cyclodextrins were studied by (1)H NMR: the translational diffusion coefficient of the peptide and chemical shift changes were studied by the presence of variable concentrations of cyclodextrins. For the full-length peptide, Abeta(1-40), the combined results of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi036254p

    authors: Danielsson J,Jarvet J,Damberg P,Gräslund A

    更新日期:2004-05-25 00:00:00

  • Aspergillus aculeatus beta-1,4-galactanase: substrate recognition and relations to other glycoside hydrolases in clan GH-A.

    abstract::The three-dimensional structure of Aspergillus aculeatus beta-1,4-galactanase (AAGAL), an enzyme involved in pectin degradation, has been determined by multiple isomorphous replacement to 2.3 and 1.8 A resolution at 293 and 100 K, respectively. It represents the first known structure for a polysaccharidase with this s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026238c

    authors: Ryttersgaard C,Lo Leggio L,Coutinho PM,Henrissat B,Larsen S

    更新日期:2002-12-24 00:00:00

  • Demonstration of nitrogen coordination in metal--bleomycin complexes by electron spin--echo envelope spectroscopy.

    abstract::We have studied the Cu(II), Co(II), and Fe(III) complexes of the antineoplastic drug bleomycin by using electron spin--echo envelope spectroscopy. For all three complexes, nitrogen coordination of the metal ions is demonstrated. For the Cu(II)-- and Co(II)--drug complexes, we have been able to identify imidazole as a ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00509a045

    authors: Burger RM,Adler AD,Horwitz SB,Mims WB,Peisach J

    更新日期:1981-03-17 00:00:00

  • Redundancy of mammalian proteasome beta subunit function during endoplasmic reticulum associated degradation.

    abstract::Misfolded proteins in the endoplasmic reticulum (ER) are degraded by N-terminal threonine proteases within the 26S proteasome. Each protease is formed by an activated beta subunit, beta5/X, beta1/Y, or beta2/Z, that exhibits chymotrypsin-like, peptidylglutamyl-peptide hydrolyzing, or trypsin-like activity, respectivel...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011322y

    authors: Oberdorf J,Carlson EJ,Skach WR

    更新日期:2001-11-06 00:00:00

  • Optical and magnetic resonance studies of formate binding to horse liver catalase and sperm whale myoglobin.

    abstract::The binding of formate ion, a substrate for the peroxidatic reaction of catalase, has been investigated by magnetic resonance techniques. Comparative studies of formate binding to ferric myoglobin have also been performed. The nuclear magnetic relaxation (NMR) rate of formate and water protons is enhanced by the prese...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00688a023

    authors: Hershberg RD,Chance B

    更新日期:1975-08-26 00:00:00

  • Identification of active-site residues of the pro-metastatic endoglycosidase heparanase.

    abstract::Heparanase is a beta-D-endoglucuronidase that cleaves heparan sulfate (HS) and has been implicated in many important physiological and pathological processes, including tumor cell metastasis, angiogenesis, and leukocyte migration. We report herein the identification of active-site residues of human heparanase. Using P...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002080p

    authors: Hulett MD,Hornby JR,Ohms SJ,Zuegg J,Freeman C,Gready JE,Parish CR

    更新日期:2000-12-26 00:00:00

  • Interactions of a Bacterial Cu(I)-ATPase with a Complex Lipid Environment.

    abstract::Phospholipids and sterols play multiple roles in cells. In addition to establishing barriers between compartments, they also provide the matrix for assembly and function of a large variety of catalytic processes. Lipid composition is a highly regulated feature of biological membranes, yet its implications for membrane...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00326

    authors: Autzen HE,Koldsø H,Stansfeld PJ,Gourdon P,Sansom MSP,Nissen P

    更新日期:2018-07-17 00:00:00

  • An experimental approach to evaluating the role of backbone interactions in proteins using unnatural amino acid mutagenesis.

    abstract::The contribution of backbone hydrogen bonds in alpha-helices to the overall stability of a protein has been examined experimentally by replacing several backbone amide linkages in alpha-helix 39-50 of T4 lysozyme with ester linkages. T4 lysozyme variants wherein the backbone amide bonds between residues Ser38 and Leu3...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9707685

    authors: Koh JT,Cornish VW,Schultz PG

    更新日期:1997-09-23 00:00:00

  • Binding specificity of multiprotein signaling complexes is determined by both cooperative interactions and affinity preferences.

    abstract::The generation of multiprotein complexes at receptors and adapter proteins is crucial for the activation of intracellular signaling pathways. In this study, we used multiple biochemical and biophysical methods to examine the binding properties of several SH2 and SH3 domain-containing signaling proteins as they interac...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0357311

    authors: Houtman JC,Higashimoto Y,Dimasi N,Cho S,Yamaguchi H,Bowden B,Regan C,Malchiodi EL,Mariuzza R,Schuck P,Appella E,Samelson LE

    更新日期:2004-04-13 00:00:00

  • Relationship between nuclear and cytoplasmic RNA in Drosophilia cells.

    abstract::Polyadenylated RNA was isolated from nuclei of cultured Drosophila cells, Schneider's line 2, and used as a template to synthesize a complementary DNA probe. Hybridization experiments were performed to study the relationship between nuclear and cytoplasmic RNA. About two-thirds of the nuclear polyadenylated RNA sequen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00656a026

    authors: Levy B,McCarthy BJ

    更新日期:1976-06-01 00:00:00

  • Expression and In Vivo Characterization of the Antimicrobial Peptide Oncocin and Variants Binding to Ribosomes.

    abstract::Peptides have important biomedical applications, but poor correlation between in vitro and in vivo activities can limit their development for clinical use. The ability to generate peptides and monitor their expression with new mass spectrometric methods and biological activities in vivo would be an advantage for the d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00600

    authors: Muthunayake NS,Islam R,Inutan ED,Colangelo W,Trimpin S,Cunningham PR,Chow CS

    更新日期:2020-09-15 00:00:00

  • Organization of clusters and internal electron pathways in CO dehydrogenase from Clostridium thermoaceticum: relevance to the mechanism of catalysis and cyanide inhibition.

    abstract::Cyanide inhibits the CO oxidation activity of carbon monoxide dehydrogenase from Clostridium thermoaceticum by binding tightly to the form of the C-cluster yielding the gav = 1.82 signal (the C1.82 form). CN- dissociates and the enzyme reactivates upon addition of CO, CO2 plus dithionite, or CS2 plus dithionite. Dithi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00195a011

    authors: Anderson ME,Lindahl PA

    更新日期:1994-07-26 00:00:00

  • Crystal structures of substrate and substrate analog complexes of protocatechuate 3,4-dioxygenase: endogenous Fe3+ ligand displacement in response to substrate binding.

    abstract::Protocatechuate 3,4-dioxygenase (3,4-PCD) utilizes a ferric ion to catalyze the aromatic ring cleavage of 3,4-dihydroxybenzoate (PCA) by incorporation of both atoms of dioxygen to yield beta-carboxy-cis, cis-muconate. The crystal structures of the anaerobic 3,4-PCD.PCA complex, aerobic complexes with two heterocyclic ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970469f

    authors: Orville AM,Lipscomb JD,Ohlendorf DH

    更新日期:1997-08-19 00:00:00

  • Importance of highly conserved anionic residues and electrostatic interactions in the activity and structure of the cardiotonic polypeptide anthopleurin B.

    abstract::Several polypeptide toxins from sea anemones caused delayed inactivation of mammalian voltage-dependent sodium channels, resulting in a positive inotropic effect on the heart. Anthopleurin B (ApB), a toxin produced by the sea anemone Anthopleura xanthogrammica, is the most potent of all known anemone toxins. Previous ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9528457

    authors: Khera PK,Blumenthal KM

    更新日期:1996-03-19 00:00:00

  • Sterol orientations in phosphatidylcholine liposomes as determined by deuterium NMR.

    abstract::Deuterium magnetic resonance spectra (55.26 MHz) of cholesterol-3 alpha-d1 and epicholesterol-3 beta-d1 in dipalmitoylglycerophosphocholine (DPPC) liposomes were measured as a function of sterol-to-phospholipid ratio below (24 degrees C) and above (60 degrees C) the phase transition temperature of DPPC. From the quadr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00353a017

    authors: Murari R,Murari MP,Baumann WJ

    更新日期:1986-03-11 00:00:00

  • An electron-electron double-resonance study of interactions between [14N]- and [15N]stearic acid spin-label pairs: lateral diffusion and vertical fluctuations in dimyristoylphosphatidylcholine.

    abstract::Vertical fluctuations of the terminal methyl groups of stearic acid acyl chains toward the surface of dimyristoylphosphatidylcholine (DMPC) bilayers have been investigated by using spin-label electron-electron double-resonance ( ELDOR ) methodology. Spin-label pairs consisting of two populations of stearic acid spin-l...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00305a032

    authors: Feix JB,Popp CA,Venkataramu SD,Beth AH,Park JH,Hyde JS

    更新日期:1984-05-08 00:00:00

  • Transport of proteins into hepatic and nonhepatic mitochondria: specificity of uptake and processing of precursor forms of carbamoyl-phosphate synthetase I.

    abstract::An in vitro system reconstituted with mouse liver polysome translation products was used to study the nature of polypeptide species imported into mitochondria from different mouse tissues such as liver, kidney, brain, and heart, as well as from Ehrlich ascites, Novikoff hepatoma, and Morris hepatoma 3924A tumor lines....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00348a041

    authors: Bhat NK,Avadhani NG

    更新日期:1985-12-31 00:00:00

  • Structure-activity analysis of the effects of lysophosphatidic acid on platelet aggregation.

    abstract::Lysophosphatidic acid (1-acyl-sn-glycero-3-phosphate or LPA) is a phospholipid mediator displaying numerous and widespread biological activities and thought to act via G-protein-coupled receptors. Here we have studied the effects on human platelets of a number of LPA analogues, including two enantiomers of both N-palm...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9816756

    authors: Gueguen G,Gaigé B,Grévy JM,Rogalle P,Bellan J,Wilson M,Klaébé A,Pont F,Simon MF,Chap H

    更新日期:1999-06-29 00:00:00

  • Optical and resonance Raman spectroscopy of the heme groups of the quinol-oxidizing cytochrome aa3 of Bacillus subtilis.

    abstract::The cytochrome aa3-type terminal quinol oxidase of Bacillus subtilis catalyzes the four-electron reduction of dioxygen to water. It resembles the aa3-type cytochrome-c oxidase in using heme A as its active-site chromophores but lacks the CuA center and the cytochrome-c oxidizing activity of the mitochondrial enzyme. W...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00156a027

    authors: Lauraeus M,Wikström M,Varotsis C,Tecklenburg MM,Babcock GT

    更新日期:1992-10-20 00:00:00

  • In Situ Photoregulation of Carbonic Anhydrase Activity Using Azobenzenesulfonamides.

    abstract::We report two small molecule azobenzenesulfonamide probes, CAP1 and CAP2, capable of photomodulating the activity of carbonic anhydrase (CA) on demand. In the trans form, CAP azobenzene probes adopt a linear shape, making them suitable for occupying the CA active site and interacting with Zn2+, thereby inhibiting enzy...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00947

    authors: Aggarwal K,Banik M,Medellin B,Que EL

    更新日期:2019-01-08 00:00:00

  • Bioluminescent Probes for Imaging Biology beyond the Culture Dish.

    abstract::Bioluminescence with luciferase-luciferin pairs is an attractive method for surveying cells in live tissues and whole organisms. Recent advances in luciferin chemistry and luciferase engineering are further expanding the scope of the technology. It is now possible to spy on cells in a variety of deep tissues and visua...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.7b00435

    authors: Rathbun CM,Prescher JA

    更新日期:2017-10-03 00:00:00