Identification and characterization of differentially expressed genes in the rice root following exogenous application of spermidine during salt stress.

Abstract:

:Salinity is a major limiting factor in crop production. Exogenous spermidine (spd) effectively ameliorates salt injury, though the underlying molecular mechanism is poorly understood. We have used a suppression subtractive hybridization method to construct a cDNA library that has identified up-regulated genes from rice root under the treatment of spd and salt. Total 175 high-quality ESTs of about 100-500 bp in length with an average size of 200 bp are isolated, clustered and assembled into a collection of 62 unigenes. Gene ontology analysis using the KEGG pathway annotation database has classified the unigenes into 5 main functional categories and 13 subcategories. The transcripts abundance has been validated using Real-Time PCR. We have observed seven different types of post-translational modifications in the DEPs. 44 transmembrane helixes are predicted in 6 DEPs. This above information can be used as first-hand data for dissecting the administrative role of spd during salinity.

journal_name

Genomics

journal_title

Genomics

authors

Saha J,Giri K,Roy S

doi

10.1016/j.ygeno.2020.07.011

subject

Has Abstract

pub_date

2020-11-01 00:00:00

pages

4125-4136

issue

6

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(19)30031-X

journal_volume

112

pub_type

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