Isotope effect studies of the pyridoxal 5'-phosphate dependent histidine decarboxylase from Morganella morganii.

Abstract:

:The pyridoxal 5'-phosphate dependent histidine decarboxylase from Morganella morganii shows a nitrogen isotope effect k14/k15 = 0.9770 +/- 0.0021, a carbon isotope effect k12/k13 = 1.0308 +/- 0.0006, and a carbon isotope effect for L-[alpha-2H]histidine of 1.0333 +/- 0.0001 at pH 6.3, 37 degrees C. These results indicate that the overall decarboxylation rate is limited jointly by the rate of Schiff base interchange and by the rate of decarboxylation. Although the observed isotope effects are quite different from those for the analogous glutamate decarboxylase from Escherichia coli [Abell, L. M., & O'Leary, M. H. (1988) Biochemistry 27, 3325], the intrinsic isotope effects for the two enzymes are essentially the same. The difference in observed isotope effects occurs because of a roughly twofold difference in the partitioning of the pyridoxal 5'-phosphate-substrate Schiff base between decarboxylation and Schiff base interchange. The observed nitrogen isotope effect requires that the imine nitrogen in this Schiff base is protonated. Comparison of carbon isotope effects for deuteriated and undeuteriated substrates reveals that the deuterium isotope effect on the decarboxylation step is about 1.20; thus, in the transition state for the decarboxylation step, the carbon-carbon bond is about two-thirds broken.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Abell LM,O'Leary MH

doi

10.1021/bi00416a016

subject

Has Abstract

pub_date

1988-08-09 00:00:00

pages

5927-33

issue

16

eissn

0006-2960

issn

1520-4995

journal_volume

27

pub_type

杂志文章
  • Selection of a carbohydrate-binding domain with a helix-loop-helix structure.

    abstract::We obtained a novel carbohydrate-binding peptide having a helix-loop-helix scaffold from a random peptide library. The helix-loop-helix peptide library randomized at five amino acid residues was displayed on the major coat protein of a filamentous phage. Affinity selection with a ganglioside, Galbeta1-3GalNAcbeta1-4(N...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8000837

    authors: Matsubara T,Iida M,Tsumuraya T,Fujii I,Sato T

    更新日期:2008-07-01 00:00:00

  • Dynamic roles of arginine residues 82 and 92 of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: crystallographic studies.

    abstract::6-Hydroxymethyl-7,8-dihydropterin pyrophosphokinase (HPPK) catalyzes the pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP), the first reaction in the folate biosynthetic pathway. Arginine residues 82 and 92, strictly conserved in 35 HPPK sequences, play dynamic roles in the catalytic cycle of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0267994

    authors: Blaszczyk J,Li Y,Shi G,Yan H,Ji X

    更新日期:2003-02-18 00:00:00

  • Calcium ion dependent covalent modification of calmodulin with norchlorpromazine isothiocyanate.

    abstract::Calmodulin forms a covalent, one to one, complex with 3H-labeled norchlorpromazine isothiocyanate. Complex formation was monitored by high-performance liquid chromatography using a CN reverse-phase column which resolves calmodulin, the calmodulin-norchlorpromazine adduct, and norchlorpromazine isothiocyanate. Formatio...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00293a003

    authors: Newton DL,Burke TR Jr,Rice KC,Klee CB

    更新日期:1983-11-22 00:00:00

  • TFEC can function as a transcriptional activator of the nonmuscle myosin II heavy chain-A gene in transfected cells.

    abstract::Transcription of the human nonmuscle myosin II heavy chain-A (NMHC-A) gene is regulated via multiple elements located in intron 1, including element F which contains an E-box. In this study we have identified and characterized the factors that are capable of binding to element F. Yeast one-hybrid screening using eleme...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002847d

    authors: Chung MC,Kim HK,Kawamoto S

    更新日期:2001-07-31 00:00:00

  • Manganese(II)-dependent extradiol-cleaving catechol dioxygenase from Arthrobacter globiformis CM-2.

    abstract::A manganese-dependent 3,4-dihydroxyphenylactate 2,3-dioxygenase from Arthrobacter globiformis strain CM-2 (MndD) cloned in Escherichia coli has been purified to homogeneity. Sedimentation equilibrium analysis indicates an alpha 4 homotetrameric holoenzyme structure (4 x 38,861 Da). Steady-state kinetic analysis of Mnd...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi951979h

    authors: Whiting AK,Boldt YR,Hendrich MP,Wackett LP,Que L Jr

    更新日期:1996-01-09 00:00:00

  • Raman spectroscopy of synthetic antimicrobial frog peptides magainin 2a and PGLa.

    abstract::Magainin and PGLa are 23- and 21-residue peptides isolated from the skin of the African clawed frog Xenopus laevis. They protect the frog from infection and exhibit a broad-spectrum antimicrobial activity in vitro. The mechanism of this activity involves the interaction of magainin with microbial membranes. We have me...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00470a031

    authors: Williams RW,Starman R,Taylor KM,Gable K,Beeler T,Zasloff M,Covell D

    更新日期:1990-05-08 00:00:00

  • Structural changes in cytochrome c upon hydrogen-deuterium exchange.

    abstract::The resonance Raman spectra of yeast ferri- and ferro-iso-1-cytochrome c dissolved in H2O and D2O are reported. Hydrogen exchange in the protein leads to distinct spectral changes of heme vibrational bands, particularly in the region between 670 and 710 cm-1 and at approximately 443 and approximately 450 cm-1. The lat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00214a013

    authors: Hildebrandt P,Vanhecke F,Heibel G,Mauk AG

    更新日期:1993-12-28 00:00:00

  • Conformational changes in the extrinsic manganese stabilizing protein can occur upon binding to the photosystem II reaction center: an isotope editing and FT-IR study.

    abstract::Photosystem II catalyzes the light-driven oxidation of water and reduction of plastoquinone in oxygenic photosynthesis. The manganese stabilizing protein (MSP) of photosystem II is an extrinsic subunit that plays an important role in catalytic activity. This subunit can be extracted and re-bound to the photosystem II ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9724467

    authors: Hutchison RS,Betts SD,Yocum CF,Barry BA

    更新日期:1998-04-21 00:00:00

  • Catalytic properties of hairpin ribozymes derived from Chicory yellow mottle virus and arabis mosaic virus satellite RNAs.

    abstract::Regions of the negative strands of the satellite RNAs of chicory yellow mottle virus (sCYMV1) and arabis mosaic virus (sArMV) have similarity in sequence and predicted secondary structure compared to the tobacco ringspot virus satellite RNA (sTRSV) hairpin ribozyme, suggesting that they may also be catalytic RNAs of a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00048a024

    authors: DeYoung M,Siwkowski AM,Lian Y,Hampel A

    更新日期:1995-12-05 00:00:00

  • Three-dimensional structure of the apo form of the N-terminal EGF-like module of blood coagulation factor X as determined by NMR spectroscopy and simulated folding.

    abstract::The three-dimensional structure of a 42-residue fragment containing the N-terminal EGF-like module of blood coagulation factor X was determined by means of 2D NMR spectroscopy and computer simulation. The spectroscopic data consisted of 370 NOE distances and 27 dihedral angle constraints. These were used to generate p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00141a004

    authors: Ullner M,Selander M,Persson E,Stenflo J,Drakenberg T,Teleman O

    更新日期:1992-07-07 00:00:00

  • Mutagenic Effects of a 2-Deoxyribonolactone-Thymine Glycol Tandem DNA Lesion in Human Cells.

    abstract::Tandem DNA lesions containing two contiguously damaged nucleotides are commonly formed by ionizing radiation. Their effects on replication in mammalian cells are largely unknown. Replication of isolated 2-deoxyribonolactone (L), thymine glycol (Tg), and tandem lesion 5'-LTg was examined in human cells. Although nearly...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b01058

    authors: Naldiga S,Huang H,Greenberg MM,Basu AK

    更新日期:2020-02-04 00:00:00

  • Transcriptional regulation of the nuclear gene encoding the alpha-subunit of the mammalian mitochondrial F1F0 ATP synthase complex: role for the orphan nuclear receptor, COUP-TFII/ARP-1.

    abstract::Our laboratory has been studying the transcriptional regulation of the nuclear gene (ATPA) that encodes the alpha-subunit of the mammalian mitochondrial F1F0 ATP synthase complex. We have previously determined that the regulatory factor, upstream stimulatory factor 2 (USF2), can stimulate transcription of the ATPA gen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0268347

    authors: Jordan EM,Worley T,Breen GA

    更新日期:2003-03-11 00:00:00

  • Preferred conformation and dynamics of the glycerol backbone in phospholipids. An NMR and X-ray single-crystal analysis.

    abstract::The conformation of the glycerol group of a number of diacyl and monoacyl (lyso) phospholipids differing in the chemical nature of the head group was studied by 1H high-resolution NMR and X-ray crystallography. The NMR measurements were carried out with solutions or micellar dispersions of the lipids in deuteriated or...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00426a014

    authors: Hauser H,Pascher I,Sundell S

    更新日期:1988-12-27 00:00:00

  • Functional characterization of zinc-finger motif in redox regulation of RPA-ssDNA interaction.

    abstract::The 70-kDa subunit of eukaryotic replication protein A (RPA) contains a conserved four cysteine-type zinc-finger motif that has been implicated in regulation of DNA replication and repair. Unlike other zinc-finger proteins, RPA zinc-finger motif is not a DNA-binding component, and deletion of the zinc-finger had very ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001206f

    authors: You JS,Wang M,Lee SH

    更新日期:2000-10-24 00:00:00

  • Cofactor and substrate binding to vanadium chloroperoxidase determined by UV-VIS spectroscopy and evidence for high affinity for pervanadate.

    abstract::The vanadate cofactor in vanadium chloroperoxidase has been studied using UV-VIS absorption spectroscopy. A band is present in the near-UV that is red-shifted as compared to free vanadate and shifts in both position and intensity upon change in pH. Mutation of vanadate binding residues has a clear effect on the spectr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9921790

    authors: Renirie R,Hemrika W,Piersma SR,Wever R

    更新日期:2000-02-08 00:00:00

  • Thermodynamic mapping of effector protein interfaces with RalA and RalB.

    abstract::RalA and RalB are members of the Ras family of small G proteins and are activated downstream of Ras via RalGEFs. The RalGEF-Ral axis represents one of the major effector pathways controlled by Ras and as such is an important pharmacological target. RalA and RalB are approximately 80% identical at the amino acid level;...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi501530u

    authors: Campbell LJ,Peppa M,Crabtree MD,Shafiq A,McGough NF,Mott HR,Owen D

    更新日期:2015-02-17 00:00:00

  • Cofactor Complexes of DesD, a Model Enzyme in the Virulence-related NIS Synthetase Family.

    abstract::The understudied nonribosomal-peptide-synthetase-independent siderophore (NIS) synthetase family has been increasingly associated with virulence in bacterial species due to its key role in the synthesis of hydroxamate and carboxylate "stealth" siderophores. We have identified a model family member, DesD, from Streptom...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00899

    authors: Hoffmann KM,Goncuian ES,Karimi KL,Amendola CR,Mojab Y,Wood KM,Prussia GA,Nix J,Yamamoto M,Lathan K,Orion IW

    更新日期:2020-09-22 00:00:00

  • Thermodynamics of a transition state analogue inhibitor binding to Escherichia coli chorismate mutase: probing the charge state of an active site residue and its role in inhibitor binding and catalysis.

    abstract::Electrostatic interactions play important roles in the catalysis of chorismate to prephenate by chorismate mutase. Mutation of Gln88 to glutamate in the monofunctional chorismate mutase from Escherichia coli results in an enzyme with a pH profile of activity significantly different from that of the wild type protein. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980217u

    authors: Lee AY,Zhang S,Kongsaeree P,Clardy J,Ganem B,Erickson JW,Xie D

    更新日期:1998-06-23 00:00:00

  • Stabilizing and Understanding a Miniprotein by Rational Redesign.

    abstract::Miniproteins reduce the complexity of the protein-folding problem allowing systematic studies of contributions to protein folding and stabilization. Here, we describe the rational redesign of a miniprotein, PPα, comprising a polyproline II helix, a loop, and an α helix. The redesign provides a de novo framework for in...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00067

    authors: Porter Goff KL,Nicol D,Williams C,Crump MP,Zieleniewski F,Samphire JL,Baker EG,Woolfson DN

    更新日期:2019-07-16 00:00:00

  • Environmental effects on formation and photoreaction of the M412 photoproduct of bacteriorhodopsin: implications for the mechanism of proton pumping.

    abstract::Photochemical studies of the effects of temperature, pH, and dehydration on the formation and back photoreaction of the M412 intermediate in the photocycle of light-adapted bacteriorhodopsin (bR570) are carried out. Continuous illumination experiments in the range between -40 and -90 degrees C indicate that at low tem...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00506a031

    authors: Kalisky O,Ottolenghi M,Honig B,Korenstein R

    更新日期:1981-02-03 00:00:00

  • Calcium regulation of calmodulin binding to and dissociation from the myo1c regulatory domain.

    abstract::Myo1c is an unconventional myosin involved in cell signaling and membrane dynamics. Calcium binding to the regulatory-domain-associated calmodulin affects myo1c motor properties, but the kinetic details of this regulation are not fully understood. We performed actin gliding assays, ATPase measurements, fluorescence sp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700894h

    authors: Manceva S,Lin T,Pham H,Lewis JH,Goldman YE,Ostap EM

    更新日期:2007-10-23 00:00:00

  • Evidence for a singlet intermediate in catalysis by Escherichia coli DNA photolyase and evaluation of substrate binding determinants.

    abstract::Escherichia coli DNA photolyase contains 1,5-dihydro-FAD (FADH2) plus 5,10-methenyl-tetrahydrofolate (5,10-CH+-H4folate). Both chromophores are fluorescent, and either can function as a sensitizer in catalysis. At 77 K separate fluorescence emission bands are observed for FADH2 (lambda max = 505 nm, shoulder at 540 nm...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00425a007

    authors: Jordan SP,Jorns MS

    更新日期:1988-12-13 00:00:00

  • Structural similarities and differences among metal ion complexes of phosphoglucomutase by solvent perturbation and ultraviolet difference spectroscopy.

    abstract::Although the binding of bivalent metal-ion activators to phosphoglucomutase produces substantial changes in the near ultraviolet spectrum of the enzyme, the extent to which aromatic residues are exposed to the aqueous environment, as assessed by means of solvent perturbation spectroscopy (using D2O), does not appear t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00601a031

    authors: Ray WJ Jr

    更新日期:1978-04-18 00:00:00

  • The application of 0.1 M quadrol to the microsequence of proteins and the sequence of tryptic peptides.

    abstract::In an effort to extend automated Edman degradation to nanomole quantities of protein, the method of sequenator analysis described by Edman and Begg (Edman, P., and Begg, G. (1967), Eur. J. Biochem. 1, 80) was modified to permit long degradations in the absence of carrier proteins. By using an aqueous 0.1 M Quadrol pro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00684a036

    authors: Brauer AW,Margolies MN,Haber E

    更新日期:1975-07-01 00:00:00

  • Interaction of ribosomal protein S1 and initiation factor IF3 with the 3' major domain and the decoding site of the 30S subunit of Escherichia coli.

    abstract::We have studied the effect of the binding of ribosomal protein S1 and initiation factor IF3 on the accessibility of nucleotide residues 584-1506 in the small subunit of the Escherichia coli ribosome. Protein S1 strongly decreases RNase V1 attack at G1164, in hairpin 40 of the 3' major domain, and weakly decreases DMS ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00112a007

    authors: Laughrea M,Tam J

    更新日期:1991-12-03 00:00:00

  • A hydroxyl group at residue 216 is essential for catalysis by human thymidylate synthase.

    abstract::Structural analyses of bacterial thymidylate synthases (TSs) implicate a serine residue corresponding to Ser216 in human TS in hydrogen bond networks that are involved in binding of the nucleotide substrate, 2'-deoxyuridylate (dUMP), and that stabilize a beta-bulge in the protein. Utilizing site-directed mutagenesis, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972562+

    authors: Williams AW,Dunlap RB,Berger SH

    更新日期:1998-05-19 00:00:00

  • Nucleosome Histone Tail Conformation and Dynamics: Impacts of Lysine Acetylation and a Nearby Minor Groove Benzo[a]pyrene-Derived Lesion.

    abstract::Histone tails in nucleosomes play critical roles in regulation of many biological processes, including chromatin compaction, transcription, and DNA repair. Moreover, post-translational modifications, notably lysine acetylation, are crucial to these functions. While the tails have been intensively studied, how the stru...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b01208

    authors: Fu I,Cai Y,Geacintov NE,Zhang Y,Broyde S

    更新日期:2017-04-11 00:00:00

  • Spatial proximity of the glycine-rich loop and the SH2 thiol in myosin subfragment 1.

    abstract::Subfragment 1 (S1) prepared from rabbit skeletal muscle myosin was digested with trypsin to cleave the 95K heavy chain into three pieces, i.e., the 23K, 50K, and 20K fragments. The trypsin-treated S1 was then cross-linked with p-nitrophenyl iodoacetate. The cross-linker bridged one of the reactive thiols (SH2) in the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00408a045

    authors: Sutoh K,Hiratsuka T

    更新日期:1988-04-19 00:00:00

  • Interaction of carbohydrate binding sites on concanavalin A-agarose with receptors on adipocytes studied by buoyant density method.

    abstract::The interaction of concanavalin A (Con A) with isolated adipocytes was studied using Con A-Sepharose beads in the affinity binding buoyant density method previously used to study insulin receptors. Free Con A-Sepharose beads could be separated from the bound beads (cell-bead complexes) by sedimentation of the high den...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00682a003

    authors: Katzen HM,Soderman DD

    更新日期:1975-06-03 00:00:00

  • Amino acid sequence of the sex steroid binding protein of human blood plasma.

    abstract::The amino acid sequence of the sex steroid binding protein (SBP) from human plasma has been determined. The SBP subunit consists of a 373-residue polypeptide chain containing two disulfide bonds and three oligosaccharide chains. The sequence was solved primarily by analysis of peptides derived by cleavage at either ly...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00371a048

    authors: Walsh KA,Titani K,Takio K,Kumar S,Hayes R,Petra PH

    更新日期:1986-11-18 00:00:00