Structural similarities and differences among metal ion complexes of phosphoglucomutase by solvent perturbation and ultraviolet difference spectroscopy.

Abstract:

:Although the binding of bivalent metal-ion activators to phosphoglucomutase produces substantial changes in the near ultraviolet spectrum of the enzyme, the extent to which aromatic residues are exposed to the aqueous environment, as assessed by means of solvent perturbation spectroscopy (using D2O), does not appear to be significantly altered by the binding process. Other ways in which the spectral effects induced by activation might arise are considered by making comparisons with those changes induced by various nonactivating monovalent and bivalent cations. The observed differences are most easily interpreted in terms of an electrostatic perturbation of (at least) two different tryptophan residues. This interpretation is supported by using cationic vs, neutral (zwitterionic) tryptophan in various solvent systems to generate difference spectra that are similar either to the observed metal-ion induced spectral differences or to the differences in the spectral changes produced by various pairs of metal ions. Although a rationale for the striking similarity in the spectral changes produced by Mg2+ and by Li+ (which elicits less than 2 X 10(-8) of the enzymic activity induced by Mg2+) cannot be ascribed to a simple electrostatic effect, alone, the involvement of an additional, negatively charged group in the binding of Mg2+ (but not Li+) could reduce the effective charge of bound Mg2+ to a value close to that of bound Li+.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Ray WJ Jr

doi

10.1021/bi00601a031

subject

Has Abstract

pub_date

1978-04-18 00:00:00

pages

1554-60

issue

8

eissn

0006-2960

issn

1520-4995

journal_volume

17

pub_type

杂志文章
  • Cooperative stabilization of microtubule dynamics by EB1 and CLIP-170 involves displacement of stably bound P(i) at microtubule ends.

    abstract::End binding protein 1 (EB1) and cytoplasmic linker protein of 170 kDa (CLIP-170) are two well-studied microtubule plus-end-tracking proteins (+TIPs) that target growing microtubule plus ends in the form of comet tails and regulate microtubule dynamics. However, the mechanism by which they regulate microtubule dynamics...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300038t

    authors: Lopus M,Manatschal C,Buey RM,Bjelić S,Miller HP,Steinmetz MO,Wilson L

    更新日期:2012-04-10 00:00:00

  • Groove- and sequence-selective alkylation of DNA by sulfonate esters tethered to lexitropsins.

    abstract::A series of sulfonate esters that are attached to a noncationic minor-groove-binding N-methylpyrrole dipeptide (Lex) related to netrospin have been synthesized. The compounds prepared differ in two respects: (1) the length [(CH2)2 vs (CH2)8] of the tether between the DNA affinity binding portion of the molecule and th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00082a017

    authors: Zhang Y,Chen FX,Mehta P,Gold B

    更新日期:1993-08-10 00:00:00

  • Drivers of α-Sheet Formation in Transthyretin under Amyloidogenic Conditions.

    abstract::Amyloid diseases make up a set of fatal disorders in which proteins aggregate to form fibrils that deposit in tissues throughout the body. Amyloid-associated diseases are challenging to study because amyloid formation occurs on time scales that span several orders of magnitude and involve heterogeneous, interconvertin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00769

    authors: Childers MC,Daggett V

    更新日期:2019-11-05 00:00:00

  • solution structure, backbone dynamics, and interaction with Cdc42 of Salmonella guanine nucleotide exchange factor SopE2.

    abstract::SopE and SopE2 are delivered by the Salmonella type III secretion system into eukaryotic cells to promote cell invasion. SopE and SopE2 are potent guanine nucleotide exchange factors (GEFs) for Rho GTPases Cdc42 and Rac1 and constitute a novel class of Rho GEFs. Although the sequence of SopE-like GEFs is not at all ho...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0490744

    authors: Williams C,Galyov EE,Bagby S

    更新日期:2004-09-28 00:00:00

  • Cytosolic region of TM6 in P-glycoprotein: topographical analysis and functional perturbation by site directed labeling.

    abstract::Reduced intracellular drug accumulation due to the activity of the drug efflux pump ABC (B1) is a major mechanism in the resistance of cancer cells to chemotherapy. ABC (B1) is a poly specific transporter, and the molecular mechanism of its complex translocation process remains to be elucidated. To understand the proc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7023089

    authors: Storm J,Modok S,O'Mara ML,Tieleman DP,Kerr ID,Callaghan R

    更新日期:2008-03-25 00:00:00

  • Modified-peptide inhibitors of amyloid beta-peptide polymerization.

    abstract::Cellular toxicity resulting from nucleation-dependent polymerization of amyloid beta-peptide (Abeta) is considered to be a major and possibly the primary component of Alzheimer's disease (AD). Inhibition of Abeta polymerization has thus been identified as a target for the development of therapeutic agents for the trea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982824n

    authors: Findeis MA,Musso GM,Arico-Muendel CC,Benjamin HW,Hundal AM,Lee JJ,Chin J,Kelley M,Wakefield J,Hayward NJ,Molineaux SM

    更新日期:1999-05-25 00:00:00

  • Identification of the catalytic residue of Thermococcus litoralis 4-alpha-glucanotransferase through mechanism-based labeling.

    abstract::Thermococcus litoralis 4-alpha-glucanotransferase (TLGT) belongs to family 57 of glycoside hydrolases and catalyzes the disproportionation and cycloamylose synthesis reactions. Family 57 glycoside hydrolases have not been well investigated, and even the catalytic mechanism involving the active site residues has not be...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011017c

    authors: Imamura H,Fushinobu S,Jeon BS,Wakagi T,Matsuzawa H

    更新日期:2001-10-16 00:00:00

  • Acoustically mounted microcrystals yield high-resolution X-ray structures.

    abstract::We demonstrate a general strategy for determining structures from showers of microcrystals. It uses acoustic droplet ejection to transfer 2.5 nL droplets from the surface of microcrystal slurries, through the air, onto mounting micromesh pins. Individual microcrystals are located by raster-scanning a several-micromete...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200549x

    authors: Soares AS,Engel MA,Stearns R,Datwani S,Olechno J,Ellson R,Skinner JM,Allaire M,Orville AM

    更新日期:2011-05-31 00:00:00

  • Using a low denaturant model to explore the conformational features of translocation-active SecA.

    abstract::The SecA molecular nanomachine in bacteria uses energy from ATP hydrolysis to drive post-translational secretion of preproteins through the SecYEG translocon. Cytosolic SecA exists in a dimeric, "closed" state with relatively low ATPase activity. After binding to the translocon, SecA undergoes major conformational rea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201793e

    authors: Maki JL,Krishnan B,Gierasch LM

    更新日期:2012-02-21 00:00:00

  • NMR studies of the phosphotransfer domain of the histidine kinase CheA from Escherichia coli: assignments, secondary structure, general fold, and backbone dynamics.

    abstract::Multidimensional heteronuclear NMR techniques were applied to study the phosphotransfer domain, residues 1-134, of the histidine kinase CheA, from Escherichia coli, which contains the site of autophosphorylation, His48. Assignments of the backbone amide groups and side chain protons are nearly complete. Our studies sh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00042a018

    authors: Zhou H,Lowry DF,Swanson RV,Simon MI,Dahlquist FW

    更新日期:1995-10-24 00:00:00

  • Complex between a Multicrossover DNA Nanostructure, PX-DNA, and T7 Endonuclease I.

    abstract::Paranemic crossover DNA (PX-DNA) is a four-stranded multicrossover structure that has been implicated in recombination-independent recognition of homology. Although existing evidence has suggested that PX is the DNA motif in homologous pairing (HP), this conclusion remains ambiguous. Further investigation is needed bu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00057

    authors: Kizer M,Huntress ID,Walcott BD,Fraser K,Bystroff C,Wang X

    更新日期:2019-03-12 00:00:00

  • Carboxyl-terminal disulfide bond of acid sphingomyelinase is critical for its secretion and enzymatic function.

    abstract::The human acid sphingomyelinase (ASM, EC 3.1.4.12), a lysosomal and secretory protein coded by the sphingomyelin phosphodiesterase 1 (SMPD-1) gene, catalyzes the degradation of sphingomyelin (SM) to ceramide and phosphorylcholine. We examined the structural-functional properties of its carboxyl-terminus (amino acids 4...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700817g

    authors: Lee CY,Tamura T,Rabah N,Lee DY,Ruel I,Hafiane A,Iatan I,Nyholt D,Laporte F,Lazure C,Wada I,Krimbou L,Genest J

    更新日期:2007-12-25 00:00:00

  • Effects of replacement of a double bond by a cyclopropane ring in phosphatidylethanolamines: a 2H NMR study of phase transitions and molecular organization.

    abstract::The thermotropic behavior and molecular properties of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine (POPE) and 1-palmitoyl-2-dihydrosterculoyl-sn-glycero-3-phosphoethanolamine (PDSPE) have been investigated by 2H NMR spectroscopy using samples selectively labeled at the 5'-, 9'-, 10'-, and 16'-positions of the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00325a038

    authors: Perly B,Smith IC,Jarrell HC

    更新日期:1985-02-12 00:00:00

  • Identification of catalytic residues in the As(III) S-adenosylmethionine methyltransferase.

    abstract::The enzyme As(III) S-adenosylmethionine methyltransferase (EC 2.1.1.137) (ArsM or AS3MT) is found in members of every kingdom, from bacteria to humans. In these enzymes, there are three conserved cysteine residues at positions 72, 174, and 224 in the CmArsM orthologue from the thermophilic eukaryotic alga Cyanidioschy...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201500c

    authors: Marapakala K,Qin J,Rosen BP

    更新日期:2012-02-07 00:00:00

  • Steric hindrance as a basis for structure-based design of selective inhibitors of protein-tyrosine phosphatases.

    abstract::Utilizing structure-based design, we have previously demonstrated that it is possible to obtain selective inhibitors of protein-tyrosine phosphatase 1B (PTP1B). A basic nitrogen was introduced into a general PTP inhibitor to form a salt bridge to Asp48 in PTP1B and simultaneously cause repulsion in PTPs containing an ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011389l

    authors: Iversen LF,Andersen HS,Møller KB,Olsen OH,Peters GH,Branner S,Mortensen SB,Hansen TK,Lau J,Ge Y,Holsworth DD,Newman MJ,Hundahl Møller NP

    更新日期:2001-12-11 00:00:00

  • Kinetic studies of FR-1, a growth factor-inducible aldo-keto reductase.

    abstract::Murine fibroblasts cultured in the presence of fibroblast growth factor-1 express relatively high levels of FR-1, a approximately 36 kDa protein related to the aldo-keto reductase superfamily [Donohue, P. J., Alberts, G. F., Hampton, B. S., Winkles, J. A. (1994) J. Biol. Chem. 269, 8604-8609]. While the crystal struct...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9804333

    authors: Srivastava S,Harter TM,Chandra A,Bhatnagar A,Srivastava SK,Petrash JM

    更新日期:1998-09-15 00:00:00

  • Effects of base composition on the negative cooperativity and binding mode transitions of Escherichia coli SSB-single-stranded DNA complexes.

    abstract::We have examined the ability of the Escherichia coli single-stranded DNA binding protein (SSB) tetramer to form its different binding modes on poly(dC), poly(U), and poly(A) over a range of NaCl and NaF concentrations for comparison with previous studies with poly(dT). In reverse titrations with poly(U) and poly(A) at...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00186a016

    authors: Lohman TM,Bujalowski W

    更新日期:1994-05-24 00:00:00

  • Sequence-selective targeting of long stretches of the DNA minor groove by a novel dimeric bis-benzimidazole.

    abstract::A dimeric bis-benzimidazole molecule has been designed by computer modeling to bind to a DNA sequence via the DNA minor groove that covers a complete turn of B-DNA. A series of bis-benzimidazole dimers incorporating a -O-(CH(2))(n)()-X-CH(2))(n)()-O- linker, with n = 2 or 3 and X = O or N(+)H(Me), were screened for th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026926w

    authors: Joubert A,Sun XW,Johansson E,Bailly C,Mann J,Neidle S

    更新日期:2003-05-27 00:00:00

  • Evidence for a recombination-independent pathway for the repair of DNA interstrand cross-links based on a site-specific study with nitrogen mustard.

    abstract::DNA-DNA interstrand cross-links are thought to be important for the cytotoxicity of many chemotherapeutic agents. To study this more definitively, adduct site-specific methods are used to construct a plasmid with a single nitrogen mustard interstrand cross-link (inter-HN2-pTZSV28). Replication efficiency (RE = [coloni...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962778w

    authors: Berardini M,Mackay W,Loechler EL

    更新日期:1997-03-25 00:00:00

  • Hydrolysis of phosphatidylcholine by hepatic lipase in discoidal and spheroidal recombinant high-density lipoprotein.

    abstract::Hepatic lipase (HL) hydrolysis of phosphatidylcholine (PC) was studied in recombinant high-density lipoprotein particles (r-HDL). r-HDL were made from cholate mixed micelles that contained PC, apo AI, and, in some cases, unesterified cholesterol. r-HDL were characterized using chemical composition, nondenaturing gradi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970356w

    authors: Tansey JT,Thuren TY,Jerome WG,Hantgan RR,Grant K,Waite M

    更新日期:1997-10-07 00:00:00

  • Light-induced global conformational change of photoactive yellow protein in solution.

    abstract::The light-induced global conformational change of photoactive yellow protein was directly observed by small-angle X-ray scattering (SAXS). The N-terminal 6, 15, or 23 amino acid residues were enzymatically truncated (T6, T15, or T23, respectively), and their near-UV intermediates were accumulated under continuous illu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0264768

    authors: Imamoto Y,Kamikubo H,Harigai M,Shimizu N,Kataoka M

    更新日期:2002-11-19 00:00:00

  • Subunit structure and peptide mapping of junctional and extrajunctional acetylcholine receptors from rat muscle.

    abstract::We have purified the junctional acetylcholine receptor from normal rat skeletal muscle and compared its structure with that of the extrajunctional receptor from denervated muscle. The two receptors from leg muscle were distinguished by isoelectric focusing and by reaction with sera from patients with myasthenia gravis...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00582a028

    authors: Nathanson NM,Hall ZW

    更新日期:1979-07-24 00:00:00

  • Selective cytotoxicity of rhodium metalloinsertors in mismatch repair-deficient cells.

    abstract::Mismatches in DNA occur naturally during replication and as a result of endogenous DNA damaging agents, but the mismatch repair (MMR) pathway acts to correct mismatches before subsequent rounds of replication. Rhodium metalloinsertors bind to DNA mismatches with high affinity and specificity and represent a promising ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi2015822

    authors: Ernst RJ,Komor AC,Barton JK

    更新日期:2011-12-20 00:00:00

  • Substrate-induced conformational changes of melibiose permease from Escherichia coli studied by infrared difference spectroscopy.

    abstract::Fourier transform infrared difference spectroscopy has been used to obtain information about substrate-induced structural changes of the melibiose permease (MelB) from Escherichia coli reconstituted into liposomes. Binding of the cosubstrate Na(+) gives rise to several peaks in the amide I and II regions of the differ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048301z

    authors: León X,Lórenz-Fonfría VA,Lemonnier R,Leblanc G,Padrós E

    更新日期:2005-03-08 00:00:00

  • DNA-dependent adenosinetriphosphatase B from mouse FM3A cells has DNA helicase activity.

    abstract::We have detected at least four forms of DNA-dependent ATPase in mouse FM3A cell extracts [Tawaragi, Y., Enomoto, T., Watanabe, Y., Hanaoka, F., & Yamada, M. (1984) Biochemistry 23, 529-533]. The purified fraction of one of the four forms, ATPase B, has been shown to have DNA helicase activity by using a DNA substrate ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00384a038

    authors: Seki M,Enomoto T,Hanaoka F,Yamada M

    更新日期:1987-05-19 00:00:00

  • Structural reorganization of proteins revealed by radiolysis and mass spectrometry: G-actin solution structure is divalent cation dependent.

    abstract::The solution structures of isolated monomeric actins in their Mg(2+)-ATP and Ca(2+)-ATP bound forms and in complexes with gelsolin segment-1 have been probed using hydroxyl radicals (*OH) generated by synchrotron X-ray radiolysis. Proteolysis and mass spectrometry analysis of 28 peptides containing 58 distinct reactiv...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034914k

    authors: Guan JQ,Almo SC,Reisler E,Chance MR

    更新日期:2003-10-21 00:00:00

  • Exonuclease-polymerase active site partitioning of primer-template DNA strands and equilibrium Mg2+ binding properties of bacteriophage T4 DNA polymerase.

    abstract::The binding of bacteriophage T4 DNA polymerase (T4 pol) to primer-template DNA with 2-aminopurine (2AP) located at the primer terminus results in the formation of a hyperfluorescent 2AP state. Changes in this hyperfluorescent state were utilized to investigate the fractional concentration of primer-templates bound at ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980074b

    authors: Beechem JM,Otto MR,Bloom LB,Eritja R,Reha-Krantz LJ,Goodman MF

    更新日期:1998-07-14 00:00:00

  • Active site loop motion in triosephosphate isomerase: T-jump relaxation spectroscopy of thermal activation.

    abstract::As for many enzymes, the enzymatic pathway of triosephosphate isomerase (TIM) includes the partially rate determining motion of an active site loop (loop 6, residues 166-176), which must remain closed during chemistry but must open just before product release. The motion of this loop was monitored using laser induced ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026994i

    authors: Desamero R,Rozovsky S,Zhadin N,McDermott A,Callender R

    更新日期:2003-03-18 00:00:00

  • Comparative electron paramagnetic resonance study of radical intermediates in turnip peroxidase isozymes.

    abstract::The occurrence of isozymes in plant peroxidases is poorly understood. Turnip roots contain seven season-dependent isoperoxidases with distinct physicochemical properties. In the work presented here, multifrequency electron paramagnetic resonance spectroscopy has been used to characterize the Compound I intermediate ob...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002826j

    authors: Ivancich A,Mazza G,Desbois A

    更新日期:2001-06-12 00:00:00

  • Functional role of proteolytic cleavage at arginine-275 of human tissue plasminogen activator as assessed by site-directed mutagenesis.

    abstract::Activation of the zymogen form of a serine protease is associated with a conformational change that follows proteolysis at a specific site. Tissue-type plasminogen activator (t-PA) is homologous to mammalian serine proteases and contains an apparent activation cleavage site at arginine-275. To clarify the functional c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00376a002

    authors: Tate KM,Higgins DL,Holmes WE,Winkler ME,Heyneker HL,Vehar GA

    更新日期:1987-01-27 00:00:00