Identification of catalytic residues in the As(III) S-adenosylmethionine methyltransferase.

Abstract:

:The enzyme As(III) S-adenosylmethionine methyltransferase (EC 2.1.1.137) (ArsM or AS3MT) is found in members of every kingdom, from bacteria to humans. In these enzymes, there are three conserved cysteine residues at positions 72, 174, and 224 in the CmArsM orthologue from the thermophilic eukaryotic alga Cyanidioschyzon sp. 5508. Substitution of any of the three led to loss of As(III) methylation. In contrast, a C72A mutant still methylated trivalent methylarsenite [MAs(III)]. Protein fluorescence of a single-tryptophan mutant reported binding of As(III) or MAs(III). As(GS)(3) and MAs(GS)(2) bound significantly faster than As(III), suggesting that the glutathionylated arsenicals are preferred substrates for the enzyme. Protein fluorescence also reported binding of Sb(III), and the purified enzyme methylated and volatilized Sb(III). The results suggest that all three cysteine residues are necessary for the first step in the reaction, As(III) methylation, but that only Cys174 and Cys224 are required for the second step, methylation of MAs(III) to dimethylarsenite [DMAs(III)]. The rate-limiting step was identified as the conversion of DMAs(III) to trimethylarsine, and DMAs(III) accumulates as the principal product.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Marapakala K,Qin J,Rosen BP

doi

10.1021/bi201500c

subject

Has Abstract

pub_date

2012-02-07 00:00:00

pages

944-51

issue

5

eissn

0006-2960

issn

1520-4995

journal_volume

51

pub_type

杂志文章
  • Ubiquitinated proteasome inhibitor is a component of the 26 S proteasome complex.

    abstract::Western blot analysis, using a polyclonal antibody to the 240-kDa endogenous inhibitor of the 20 S proteasome, revealed that the inhibitor is a component of the 26 S complex. Although isolated inhibitor displayed a single 40-kDa band on SDS-PAGE, the antibody detected a 55-kDa component in the 26 S proteasome complex....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00163a001

    authors: Li XS,Etlinger JD

    更新日期:1992-12-08 00:00:00

  • Inhibition of phosphomannose isomerase by mercury ions.

    abstract::Mercury ions can inhibit Candida albicans phosphomannose isomerase (PMI) by two different processes at sub-micromolar concentrations. Kinetic studies show that mercury ions are in rapid equilibrium with the enzyme and cause a clear partial noncompetitive inhibition when mannose 6-phosphate is used as the substrate. Th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00190a018

    authors: Wells TN,Payton MA,Proudfoot AE

    更新日期:1994-06-21 00:00:00

  • Structural and biochemical studies of a fluoroacetyl-CoA-specific thioesterase reveal a molecular basis for fluorine selectivity.

    abstract::We have initiated a broad-based program aimed at understanding the molecular basis of fluorine specificity in enzymatic systems, and in this context, we report crystallographic and biochemical studies on a fluoroacetyl-coenzyme A (CoA) specific thioesterase (FlK) from Streptomyces cattleya. Our data establish that FlK...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101102u

    authors: Weeks AM,Coyle SM,Jinek M,Doudna JA,Chang MC

    更新日期:2010-11-02 00:00:00

  • The axial tyrosinate Fe3+ ligand in protocatechuate 3,4-dioxygenase influences substrate binding and product release: evidence for new reaction cycle intermediates.

    abstract::The essential active site Fe3+ of protocatechuate 3,4-dioxygenase [3, 4-PCD, subunit structure (alphabetaFe3+)12] is bound by axial ligands, Tyr447 (147beta) and His462 (162beta), and equatorial ligands, Tyr408 (108beta), His460 (160beta), and a solvent OH- (Wat827). Recent X-ray crystallographic studies have shown th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972047b

    authors: Frazee RW,Orville AM,Dolbeare KB,Yu H,Ohlendorf DH,Lipscomb JD

    更新日期:1998-02-24 00:00:00

  • Identification of the heme-modified peptides from cumene hydroperoxide-inactivated cytochrome P450 3A4.

    abstract::Cumene hydroperoxide-mediated (CuOOH-mediated) inactivation of cytochromes P450 (CYPs) results in destruction of their prosthetic heme to reactive fragments that irreversibly bind to the protein. We have attempted to characterize this process structurally, using purified, 14C-heme labeled, recombinant human liver P450...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9808464

    authors: He K,Bornheim LM,Falick AM,Maltby D,Yin H,Correia MA

    更新日期:1998-12-15 00:00:00

  • Influence of phosphoenolpyruvate and magnesium ions on the quaternary structure of enzyme I of the phosphotransferase system from gram-positive bacteria.

    abstract::Solution X-ray scattering patterns of enzyme I of the phosphotransferase system from Staphylococcus carnosus indicate an increase in radius of gyration and molecular mass in the presence of Mg2+ or both Mg2+ and phosphoenolpyruvate, indicating a partial dimerization of enzyme I. Mg2+ ions are essential for both the di...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00048a014

    authors: Hübner G,König S,Koch MH,Hengstenberg W

    更新日期:1995-12-05 00:00:00

  • Hydrolysis of plant cuticle by plant pathogens. Properties of cutinase I, cutinase II, and a nonspecific esterase isolated from Fusarium solani pisi.

    abstract::The properties of the homogeneous cutinase I, cutinase II, and the nonspecific esterase isolated from the extracellular fluid of cutin-grown Fusarium solani F. pisi (R.E. Purdy and P.E. Kolattukudy (1975), Biochemistry, preceding paper in this issue) were investigated. Using tritiated apple cutin as substrate, the two...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00684a007

    authors: Purdy RE,Kolattukudy PE

    更新日期:1975-07-01 00:00:00

  • On the mechanism of activation of the BLUF domain of AppA.

    abstract::AppA, a transcriptional antirepressor, regulates the steady expression of photosynthesis genes in Rhodobacter sphaeroides in response to high-intensity blue light and to redox signals. Its blue-light sensing is mediated by an N-terminal BLUF domain, a member of a novel flavin fold. The photocycle of this domain (AppA(...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051367p

    authors: Laan W,Gauden M,Yeremenko S,van Grondelle R,Kennis JT,Hellingwerf KJ

    更新日期:2006-01-10 00:00:00

  • Ionophoric activity of pluronic block copolymers.

    abstract::Pluronic block copolymers (triblock copolymers of poly(ethylene oxide) and poly(propylene oxide)) exhibit a chemosensitizing effect on multidrug resistant cell lines. Changes in membrane permeability are hypothesized to be responsible because inhibition of drug transport mediated by both the multidrug-resistance-assoc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035768l

    authors: Krylova OO,Pohl P

    更新日期:2004-03-30 00:00:00

  • Comparative hydrogen-deuterium exchange for a mesophilic vs thermophilic dihydrofolate reductase at 25 °C: identification of a single active site region with enhanced flexibility in the mesophilic protein.

    abstract::The technique of hydrogen-deuterium exchange coupled to mass spectrometry (HDX-MS) has been applied to a mesophilic (E. coli) dihydrofolate reductase under conditions that allow direct comparison to a thermophilic (B. stearothermophilus) ortholog, Ec-DHFR and Bs-DHFR, respectively. The analysis of hydrogen-deuterium e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200640s

    authors: Oyeyemi OA,Sours KM,Lee T,Kohen A,Resing KA,Ahn NG,Klinman JP

    更新日期:2011-09-27 00:00:00

  • Biosynthesis of prolyl hydroxylase: evidence for two separate dolichol-media pathways of glycosylation.

    abstract::Prolyl hydroxylase is a glycoprotein containing two nonidentical subunits, alpha and beta. The alpha subunit of prolyl hydroxylase isolated from 13-day-old chick embryos contains a single high mannose oligosaccharide having seven mannosyl residues. Two forms of alpha subunit have been shown to exist in enzyme purified...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00342a041

    authors: Kedersha NL,Tkacz JS,Berg RA

    更新日期:1985-10-08 00:00:00

  • Variability and conformation of HLA class I antigens: a predictive approach to the spatial arrangement of polymorphic regions.

    abstract::Comparison of available sequences of HLA-A and HLA-B antigens shows that variable positions are predominantly localized in four segments spanning residues 63-85, 105-116, 138-156, and 177-194. The fourth segment is unique in that it contains no differences between antigens of the same locus. Secondary folding of HLA h...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00300a007

    authors: Vega MA,Bragado R,Ezquerra A,López de Castro JA

    更新日期:1984-02-28 00:00:00

  • Perturbation of a tertiary hydrogen bond in barstar by mutagenesis of the sole His residue to Gln leads to accumulation of at least one equilibrium folding intermediate.

    abstract::A specific tertiary hydrogen bond that is present between the side-chain hydroxyl group of Tyr30 and the side-chain N delta 1 atom of His17 in the small, monomeric, single-domain protein, barstar, has been perturbed by site-directed mutagenesis of the sole histidine residue (His17) to a glutamine residue. The effect o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00005a027

    authors: Nath U,Udgaonkar JB

    更新日期:1995-02-07 00:00:00

  • Photoreversal-dependent release of thymidine and thymidine monophosphate from pyrimidine dimer-containing DNA excision fragments isolated from ultraviolet-damaged human fibroblasts.

    abstract::To elucidate the enzymatic excision-repair process operative on cyclobutane-type pyrimidine photodimers in human dermal fibroblasts, we have examined excised dimer-containing material recovered in the trichloroacetic acid soluble fraction from far-ultraviolet-irradiated (254 nm, 40 J m-2) and incubated (24 h) cell cul...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00357a055

    authors: Weinfeld M,Gentner NE,Johnson LD,Paterson MC

    更新日期:1986-05-06 00:00:00

  • The active-site histidine-10 of enterococcal NADH peroxidase is not essential for catalytic activity.

    abstract::In order to test the proposal [Stehle, T., Claiborne, A., & Schulz, G. E. (1993) Eur. J. Biochem. 211, 221-226] that the active-site His10 of NADH peroxidase functions as an essential acid-base catalyst, we have analyzed mutants in which this residue has been replaced by Gln or Ala. The k(cat) values for both H10Q and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952347y

    authors: Crane EJ 3rd,Parsonage D,Claiborne A

    更新日期:1996-02-20 00:00:00

  • Biogenesis of processing-competent secretory organelles in vitro.

    abstract::Propeptide processing occurs in specific compartments of the secretory pathway, but how these processing-competent organelles are generated from their processing-incompetent precursor compartments is unknown. To dissect the process biochemically, we have developed a novel cell-free system reconstituting the production...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0112762

    authors: Andresen JM,Moore HP

    更新日期:2001-10-30 00:00:00

  • Structural determinants of HscA peptide-binding specificity.

    abstract::The Hsp70-class molecular chaperone HscA interacts specifically with a conserved (99)LPPVK(103) motif of the iron-sulfur cluster scaffold protein IscU. We used a cellulose-bound peptide array to perform single-site saturation substitution of peptide residues corresponding to Glu(98)-Ile(104) of IscU to determine posit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0606187

    authors: Tapley TL,Cupp-Vickery JR,Vickery LE

    更新日期:2006-07-04 00:00:00

  • Proton NMR investigation of substrate-bound heme oxygenase: evidence for electronic and steric contributions to stereoselective heme cleavage.

    abstract::The substrate-bound form of the enzyme heme oxygenase (HO), which catalyzed the stereospecific alpha-meso bridge cleavage of hemin to yield biliverdin IX alpha, has been investigated by 1H NMR in both its primarily high-spin and its cyanide-inhibited low-spin forms. Both derivatives yield 1H NMR spectra indicative of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00187a033

    authors: Hernández G,Wilks A,Paolesse R,Smith KM,Ortiz de Montellano PR,La Mar GN

    更新日期:1994-05-31 00:00:00

  • Reversible photocontrol of DNA binding by a designed GCN4-bZIP protein.

    abstract::Synthetic photocontrolled proteins could be powerful tools for probing cellular chemistry. Several previous attempts to produce such systems by incorporating photoisomerizable chromophores into biomolecules have led to photocontrol but with incomplete reversibility, where the chromophore becomes trapped in one photois...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060142r

    authors: Woolley GA,Jaikaran AS,Berezovski M,Calarco JP,Krylov SN,Smart OS,Kumita JR

    更新日期:2006-05-16 00:00:00

  • NMR structural studies of a 15-mer DNA sequence from a ras protooncogene, modified at the first base of codon 61 with the carcinogen 4-aminobiphenyl.

    abstract::Proton NMR studies were conducted on the complementary 15-mer duplex d(5'-TACTCTTCTTGACCT).(5'-AGGTCAAGAAGAGTA) (designated as unmodified 15-mer duplex) spanning a portion of the mouse c-Ha-ras protooncogene centered around codon 61. Identical studies were carried out on the same sequence, after specific modification ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00155a011

    authors: Cho BP,Beland FA,Marques MM

    更新日期:1992-10-13 00:00:00

  • Cruciform DNA binding protein in HeLa cell extracts.

    abstract::We have analyzed by band-shift assays HeLa cell protein-DNA interactions on a stable cruciform DNA molecule. The stable cruciform was formed by heteroduplexing the HindIII-SphI fragment of SV40 virus DNA that contains the origin of replication with a derivative mutant containing a heterologous substitution at the cent...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00251a030

    authors: Pearson CE,Ruiz MT,Price GB,Zannis-Hadjopoulos M

    更新日期:1994-11-29 00:00:00

  • Chemical Interactions of Polyethylene Glycols (PEGs) and Glycerol with Protein Functional Groups: Applications to Effects of PEG and Glycerol on Protein Processes.

    abstract::In this work, we obtain the data needed to predict chemical interactions of polyethylene glycols (PEGs) and glycerol with proteins and related organic compounds and thereby interpret or predict chemical effects of PEGs on protein processes. To accomplish this, we determine interactions of glycerol and tetraEG with >30...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00246

    authors: Knowles DB,Shkel IA,Phan NM,Sternke M,Lingeman E,Cheng X,Cheng L,O'Connor K,Record MT

    更新日期:2015-06-09 00:00:00

  • Effect of β,γ-CHF- and β,γ-CHCl-dGTP halogen atom stereochemistry on the transition state of DNA polymerase β.

    abstract::Recently, we synthesized the first individual β,γ-CHX-dGTP diastereomers [(R)- or (S)-CHX, where X is F or Cl] and determined their structures in ternary complexes with DNA polymerase β (pol β). We now report stereospecificity by pol β on the mixed β,γ-CHX diastereomer pairs using nuclear magnetic resonance and on the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi3010335

    authors: Oertell K,Wu Y,Zakharova VM,Kashemirov BA,Shock DD,Beard WA,Wilson SH,McKenna CE,Goodman MF

    更新日期:2012-10-30 00:00:00

  • SDS-stable complex formation between native apolipoprotein E3 and beta-amyloid peptides.

    abstract::Extracellular senile plaques composed predominantly of fibrillar amyloid-beta (Abeta) are a major neuropathological feature of Alzheimer's disease (AD). Genetic evidence and in vivo studies suggest that apolipoprotein E (apoE) may contribute to amyloid clearance and/or deposition. In vitro studies demonstrate that nat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0017475

    authors: Munson GW,Roher AE,Kuo YM,Gilligan SM,Reardon CA,Getz GS,LaDu MJ

    更新日期:2000-12-26 00:00:00

  • Effect of an Ala81His mutation on the Met80 loop dynamics of iso-1-cytochrome c.

    abstract::An A81H variant of yeast iso-1-cytochrome c is prepared to test the hypothesis that the steric size of the amino acid at sequence position 81 of cytochrome c, which has evolved from Ala in yeast to Ile in mammals, slows the dynamics of the opening of the heme crevice. The A81H mutation is used both to increase steric ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi501252z

    authors: Bandi S,Bowler BE

    更新日期:2015-03-10 00:00:00

  • N-terminal region of CusB is sufficient for metal binding and metal transfer with the metallochaperone CusF.

    abstract::Gram-negative bacteria, such as Escherichia coli, utilize efflux resistance systems in order to expel toxins from their cells. Heavy-metal resistance is mediated by resistance nodulation cell division (RND)-based efflux pumps composed of a tripartite complex that includes an RND-transporter, an outer-membrane factor (...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300596a

    authors: Mealman TD,Zhou M,Affandi T,Chacón KN,Aranguren ME,Blackburn NJ,Wysocki VH,McEvoy MM

    更新日期:2012-08-28 00:00:00

  • Formation of monomeric S100B and S100A11 proteins at low ionic strength.

    abstract::The S100 proteins comprise a group of EF-hand proteins that undergo a calcium-induced conformational change allowing them to interact with other proteins and produce a biological response. A unique feature of these proteins is the fact that they can form both homo- and heterodimers independent of calcium binding. The ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802086a

    authors: Marlatt NM,Boys BL,Konermann L,Shaw GS

    更新日期:2009-03-10 00:00:00

  • Three-dimensional structure of the respiratory chain supercomplex I1III2IV1 from bovine heart mitochondria.

    abstract::The respiratory chain complexes can arrange into multienzyme assemblies, so-called supercomplexes. We present the first 3D map of a respiratory chain supercomplex. It was determined by random conical tilt electron microscopy analysis of a bovine supercomplex consisting of complex I, dimeric complex III, and complex IV...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700983h

    authors: Schäfer E,Dencher NA,Vonck J,Parcej DN

    更新日期:2007-11-06 00:00:00

  • Sumoylation of the yeast Gcn5 protein.

    abstract::Sumoylation, the process by which the ubiquitin-related SUMO protein is covalently attached to lysine side chains in other proteins, is involved in numerous processes in the eukaryotic cell, including transcriptional repression. In this study, we identify Gcn5, the histone-modifying subunit of the transcriptional regu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051624q

    authors: Sterner DE,Nathan D,Reindle A,Johnson ES,Berger SL

    更新日期:2006-01-24 00:00:00

  • Incorporation of fragment X into fibrin clots renders them more susceptible to lysis by plasmin.

    abstract::Bleeding, the most serious complication of thrombolytic therapy with tissue-type plasminogen activator (t-PA), is thought to result from lysis of fibrin in hemostatic plugs and from the systemic lytic state caused by unopposed plasmin. One mechanism by which systemic plasmin can impair hemostasis is by partially degra...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0525730

    authors: Schaefer AV,Leslie BA,Rischke JA,Stafford AR,Fredenburgh JC,Weitz JI

    更新日期:2006-04-04 00:00:00