Genetic mapping of a highly variable norovirus GII.4 blockade epitope: potential role in escape from human herd immunity.

Abstract:

:Noroviruses account for 96% of viral gastroenteritis cases worldwide, with GII.4 strains responsible >80% of norovirus outbreaks. Histo-blood group antigens (HBGAs) are norovirus binding ligands, and antigenic and preferential HBGA binding profiles vary over time as new GII.4 strains emerge. The capsid P2 subdomain facilitates HBGA binding, contains neutralizing antibody epitopes, and likely evolves in response to herd immunity. To identify amino acids regulating HBGA binding and antigenic differences over time, we created chimeric virus-like particles (VLPs) between the GII.4-1987 and GII.4-2006 strains by exchanging amino acids in putative epitopes and characterized their antigenic and HBGA binding profiles using anti-GII.4-1987 and -2006 mouse monoclonal antibodies (MAbs) and polyclonal sera, 1988 outbreak human sera, and synthetic HBGAs. The exchange of amino acids 393 to 395 between GII.4-1987 and GII.4-2006 resulted in altered synthetic HBGA binding compared to parental strains. Introduction of GII.4-1987 residues 294, 297 to 298, 368, and 372 (epitope A) into GII.4-2006 resulted in reactivity with three anti-GII.4-1987 MAbs and reduced reactivity with four anti-GII.4-2006 MAbs. The three anti-GII.4-1987 MAbs also blocked chimeric VLP-HBGA interaction, while an anti-GII.4-2006 blocking antibody did not, indicating that epitope A amino acids comprise a potential neutralizing epitope for GII.4-1987 and GII.4-2006. We also tested GII.4-1987-immunized mouse polyclonal sera and 1988 outbreak human sera for the ability to block chimeric VLP-HBGA interaction and found that epitope A amino acids contribute significantly to the GII.4-1987 blockade response. Our data provide insights that help explain the emergence of new GII.4 epidemic strains over time, may aid development of norovirus therapeutics, and may help predict the emergence of future epidemic strains.

journal_name

J Virol

journal_title

Journal of virology

authors

Debbink K,Donaldson EF,Lindesmith LC,Baric RS

doi

10.1128/JVI.06189-11

subject

Has Abstract

pub_date

2012-01-01 00:00:00

pages

1214-26

issue

2

eissn

0022-538X

issn

1098-5514

pii

JVI.06189-11

journal_volume

86

pub_type

杂志文章
  • Inhibition of the type I interferon response by the nucleoprotein of the prototypic arenavirus lymphocytic choriomeningitis virus.

    abstract::The prototypic arenavirus lymphocytic choriomeningitis virus (LCMV) is a formidable battle horse for the study of viral immunology, as well as viral persistence and associated diseases. Investigations with LCMV have uncovered basic mechanisms by which viruses avoid elimination by the host adaptive immune response. In ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00555-06

    authors: Martínez-Sobrido L,Zúñiga EI,Rosario D,García-Sastre A,de la Torre JC

    更新日期:2006-09-01 00:00:00

  • Identification of amino acid residues in CD81 critical for interaction with hepatitis C virus envelope glycoprotein E2.

    abstract::Human CD81 has been previously identified as the putative receptor for the hepatitis C virus envelope glycoprotein E2. The large extracellular loop (LEL) of human CD81 differs in four amino acid residues from that of the African green monkey (AGM), which does not bind E2. We mutated each of the four positions in human...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.8.3642-3649.2000

    authors: Higginbottom A,Quinn ER,Kuo CC,Flint M,Wilson LH,Bianchi E,Nicosia A,Monk PN,McKeating JA,Levy S

    更新日期:2000-04-01 00:00:00

  • Structure and complete nucleotide sequence of the Marek's disease herpesvirus gp57-65 gene.

    abstract::The gene encoding the precursor polypeptide of the Marek's disease herpesvirus (MDHV) secretory glycoprotein gp57-65 (formerly identified as A antigen) has been sequenced. Previous results had localized the gene to a 4.6-kilobase (kb) segment of the BamHI B fragment in the unique long region of the MDHV genome. S1 nuc...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.62.7.2373-2379.1988

    authors: Coussens PM,Velicer LF

    更新日期:1988-07-01 00:00:00

  • Chaperones activate hepadnavirus reverse transcriptase by transiently exposing a C-proximal region in the terminal protein domain that contributes to epsilon RNA binding.

    abstract::All hepatitis B viruses replicate by protein-primed reverse transcription, employing a specialized reverse transcriptase, P protein, that carries a unique terminal protein (TP) domain. To initiate reverse transcription, P protein must bind to a stem-loop, epsilon, on the pregenomic RNA template. TP then provides a Y r...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01196-07

    authors: Stahl M,Beck J,Nassal M

    更新日期:2007-12-01 00:00:00

  • Active-site mutations in the South african human immunodeficiency virus type 1 subtype C protease have a significant impact on clinical inhibitor binding: kinetic and thermodynamic study.

    abstract::Human immunodeficiency virus (HIV) infections in sub-Saharan Africa represent about 56% of global infections. Study of active-site mutations (the V82A single mutation and the V82F I84V double mutation) in the less-studied South African HIV type 1 subtype C (C-SA) protease indicated that neither mutation had a signific...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00726-08

    authors: Mosebi S,Morris L,Dirr HW,Sayed Y

    更新日期:2008-11-01 00:00:00

  • The N-terminal region of an entomopoxvirus fusolin is essential for the enhancement of peroral infection, whereas the C-terminal region is eliminated in digestive juice.

    abstract::The spindles of Anomala cuprea entomopoxvirus (AncuEPV), which are composed of glycoprotein fusolin, are known to enhance the peroral infectivity of AncuEPV itself and of nucleopolyhedroviruses. This has been demonstrated to involve the disruption of intestinal peritrophic membrane (PM), composed of chitin matrix, gly...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01605-08

    authors: Takemoto Y,Mitsuhashi W,Murakami R,Konishi H,Miyamoto K

    更新日期:2008-12-01 00:00:00

  • Three-dimensional localization of the smallest capsid protein in the human cytomegalovirus capsid.

    abstract::The smallest capsid proteins (SCPs) of the human herpesviruses differ substantially in size and sequence and are thought to impart some unique aspects of infection to their respective viruses. We used electron cryomicroscopy and antibody labeling to show that the 8-kDa SCP of human cytomegalovirus is attached only to ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.2.1327-1332.2005

    authors: Yu X,Shah S,Atanasov I,Lo P,Liu F,Britt WJ,Zhou ZH

    更新日期:2005-01-01 00:00:00

  • Newly identified phosphorylation site in the vesicular stomatitis virus P protein is required for viral RNA synthesis.

    abstract::The vesicular stomatitis virus (VSV) RNA-dependent RNA polymerase consists of two viral proteins; the large (L) protein is the main catalytic subunit, and the phosphoprotein (P) is an essential cofactor for polymerase function. The P protein interacts with the L protein and the N-RNA template, thus connecting the poly...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02384-13

    authors: Mondal A,Victor KG,Pudupakam RS,Lyons CE,Wertz GW

    更新日期:2014-02-01 00:00:00

  • Influence of the rate of cell growth and cell density on interferon action in chick embryo cells.

    abstract::Chick embryo cells became more sensitive to the action of interferon the longer they remained in culture. This phenomenon was found even before confluency had been reached. The relative insensitivity of newly seeded cells was not due to a loss of receptors. Cells synthesizing deoxyribonucleic acid (DNA) at a high rate...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.4.1.7-11.1969

    authors: Rossman TG,Vilcek J

    更新日期:1969-07-01 00:00:00

  • Loss of cytoskeletal transport during egress critically attenuates ectromelia virus infection in vivo.

    abstract::Egress of wrapped virus (WV) to the cell periphery following vaccinia virus (VACV) replication is dependent on interactions with the microtubule motor complex kinesin-1 and is mediated by the viral envelope protein A36. Here we report that ectromelia virus (ECTV), a related orthopoxvirus and the causative agent of mou...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.06636-11

    authors: Lynn H,Horsington J,Ter LK,Han S,Chew YL,Diefenbach RJ,Way M,Chaudhri G,Karupiah G,Newsome TP

    更新日期:2012-07-01 00:00:00

  • Repositioning basic residues in the M domain of the Rous sarcoma virus gag protein.

    abstract::The first 86 residues of the Rous sarcoma virus (RSV) Gag protein form a membrane-binding (M) domain that directs Gag to the plasma membrane during budding. Unlike other retroviral Gag proteins, RSV Gag is not myristylated; however, the RSV M domain does contain 11 basic residues that could potentially interact with a...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.23.11222-11229.2000

    authors: Callahan EM,Wills JW

    更新日期:2000-12-01 00:00:00

  • Immune response to mouse mammary tumor virus in mice lacking the alpha/beta interferon or the gamma interferon receptor.

    abstract::Mouse mammary tumor virus (MMTV) is a retrovirus which induces a strong immune response and a dramatic increase in the number of infected cells through the expression of a superantigen (SAg). Many cytokines are likely to be involved in the interaction between MMTV and the immune system. In particular, alpha/beta inter...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.4.2638-2646.1998

    authors: Maillard I,Launois P,Xenarios I,Louis JA,Acha-Orbea H,Diggelmann H

    更新日期:1998-04-01 00:00:00

  • Human T-cell lymphotropic virus type 1 Tax mediates enhanced transcription in CD4+ T lymphocytes.

    abstract::Human T-cell leukemia virus type 1 (HTLV-1) is the etiologic agent of adult T-cell leukemia/lymphoma and is associated with a variety of immunoregulatory disorders. HTLV-1 has been shown to bind to and infect a variety of hematopoietic and nonhematopoietic cells. However, both in vivo and in vitro, the provirus is mos...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.70.4.2101-2106.1996

    authors: Newbound GC,Andrews JM,O'Rourke JP,Brady JN,Lairmore MD

    更新日期:1996-04-01 00:00:00

  • Analysis of Paramyxovirus Transcription and Replication by High-Throughput Sequencing.

    abstract::We have developed a high-throughput sequencing (HTS) workflow for investigating paramyxovirus transcription and replication. We show that sequencing of oligo(dT)-selected polyadenylated mRNAs, without considering the orientation of the RNAs from which they had been generated, cannot accurately be used to analyze the a...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00571-19

    authors: Wignall-Fleming EB,Hughes DJ,Vattipally S,Modha S,Goodbourn S,Davison AJ,Randall RE

    更新日期:2019-08-13 00:00:00

  • Assembly of the coronavirus envelope: homotypic interactions between the M proteins.

    abstract::The viral membrane proteins M and E are the minimal requirements for the budding of coronavirus particles. Since the E protein occurs in particles only in trace amounts, the lateral interactions between the M proteins apparently generate the major driving force for envelope formation. By using coimmunoprecipitation an...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.11.4967-4978.2000

    authors: de Haan CA,Vennema H,Rottier PJ

    更新日期:2000-06-01 00:00:00

  • A Regulatory Element Near the 3' End of the Adeno-Associated Virus rep Gene Inhibits Adenovirus Replication in cis by Means of p40 Promoter-Associated Short Transcripts.

    abstract:UNLABELLED:Adeno-associated virus (AAV) has long been known to inhibit helper adenovirus (Ad) replication independently of AAV Rep protein expression. More recently, replication of Ad serotype 5 (Ad5)/AAV serotype 2 (AAV-2) hybrid vectors was shown to be inhibited incisby a sequence near the 3' end of AAVrep, termed th...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.03120-15

    authors: Weger S,Hammer E,Gonsior M,Stutika C,Heilbronn R

    更新日期:2016-03-28 00:00:00

  • Transcription and transport of virus-specific ribonucleic acids in African green monkey kidney cells abortively infected with type 2 adenovirus.

    abstract::The techniques of deoxyribonucleic acid-ribonucleic acid (DNA-RNA) hybridization and immunological precipitation were used to compare the synthesis of adenovirus-specific macromolecules in African green monkey kidney (AGMK) cells infected with adenovirus, an abortive infection, and coinfected with both adenovirus and ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.10.6.1109-1117.1972

    authors: Lucas JJ,Ginsberg HS

    更新日期:1972-12-01 00:00:00

  • A single amino acid of the human immunodeficiency virus type 2 capsid affects its replication in the presence of cynomolgus monkey and human TRIM5alphas.

    abstract::Human immunodeficiency virus type 2 (HIV-2) strains vary widely in their abilities to grow in Old World monkey (OWM) cells such as those of cynomolgus monkeys (CM). We evaluated eight HIV-2 isolates for their sensitivities to CM TRIM5alpha, an anti-HIV factor in OWM cells. We found that different HIV-2 isolates showed...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00406-07

    authors: Song H,Nakayama EE,Yokoyama M,Sato H,Levy JA,Shioda T

    更新日期:2007-07-01 00:00:00

  • Potassium ion channels of Chlorella viruses cause rapid depolarization of host cells during infection.

    abstract::Previous studies have established that chlorella viruses encode K(+) channels with different structural and functional properties. In the current study, we exploit the different sensitivities of these channels to Cs(+) to determine if the membrane depolarization observed during virus infection is caused by the activit...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.80.5.2437-2444.2006

    authors: Frohns F,Käsmann A,Kramer D,Schäfer B,Mehmel M,Kang M,Van Etten JL,Gazzarrini S,Moroni A,Thiel G

    更新日期:2006-03-01 00:00:00

  • Interferon Regulatory Factor 7 Attenuates Chronic Gammaherpesvirus Infection.

    abstract::Gammaherpesviruses are ubiquitous pathogens that establish lifelong infections and are associated with a variety of malignancies, including lymphomas. Interferon regulatory factor 7 (IRF-7) is an innate immune transcription factor that restricts acute replication of diverse viruses, including murine gammaherpesvirus 6...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01554-20

    authors: Johnson KE,Aurubin CA,Jondle CN,Lange PT,Tarakanova VL

    更新日期:2020-11-23 00:00:00

  • Thymidine kinase from normal, simian virus 40-transformed and simian virus 40-lytically infected cells.

    abstract::Simian virus 40 (SV40) infection of human diploid cells failed to cause an enhanced production of thymidine kinase during the first 10 days after infection. Thymidine kinase activities from extracts of SV40-transformed cultures (human or simian) were considerably higher than the activity levels in extracts from the no...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.1.5.912-919.1967

    authors: Carp RI

    更新日期:1967-10-01 00:00:00

  • Styrylquinolines, integrase inhibitors acting prior to integration: a new mechanism of action for anti-integrase agents.

    abstract::We have previously shown that styrylquinolines (SQLs) are integrase inhibitors in vitro. They compete with the long terminal repeat substrate for integrase. Here, we describe the cellular mode of action of these molecules. We show that SQLs do not interfere with virus entry. In fact, concentrations of up to 20 times t...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.78.11.5728-5736.2004

    authors: Bonnenfant S,Thomas CM,Vita C,Subra F,Deprez E,Zouhiri F,Desmaële D,D'Angelo J,Mouscadet JF,Leh H

    更新日期:2004-06-01 00:00:00

  • Apical entry and release of severe acute respiratory syndrome-associated coronavirus in polarized Calu-3 lung epithelial cells.

    abstract::Severe acute respiratory syndrome (SARS), caused by a novel coronavirus (CoV) known as SARS-CoV, is a contagious and life-threatening respiratory illness with pneumocytes as its main target. A full understanding of how SARS-CoV would interact with lung epithelial cells will be vital for advancing our knowledge of SARS...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.15.9470-9479.2005

    authors: Tseng CT,Tseng J,Perrone L,Worthy M,Popov V,Peters CJ

    更新日期:2005-08-01 00:00:00

  • A recombinant human monoclonal antibody to human metapneumovirus fusion protein that neutralizes virus in vitro and is effective therapeutically in vivo.

    abstract::Human metapneumovirus (hMPV) is a recently discovered paramyxovirus that is a major cause of lower-respiratory-tract disease. hMPV is associated with more severe disease in infants and persons with underlying medical conditions. Animal studies have shown that the hMPV fusion (F) protein alone is capable of inducing pr...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00106-07

    authors: Williams JV,Chen Z,Cseke G,Wright DW,Keefer CJ,Tollefson SJ,Hessell A,Podsiad A,Shepherd BE,Sanna PP,Burton DR,Crowe JE Jr,Williamson RA

    更新日期:2007-08-01 00:00:00

  • Polyomavirus middle T protein encoded by a retrovirus transforms nonestablished chicken embryo cells.

    abstract::A murine retrovirus encoding the middle T protein of polyomavirus infected and transformed nonestablished chicken embryo cells. The infected cultures formed colonies in soft agar-containing medium and released infectious transforming virus. Middle T protein expressed in the transformed chicken cells associated with p6...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.56.3.1023-1026.1985

    authors: Kaplan PL,Simon S,Eckhart W

    更新日期:1985-12-01 00:00:00

  • Human cytomegalovirus attenuates interleukin-1beta and tumor necrosis factor alpha proinflammatory signaling by inhibition of NF-kappaB activation.

    abstract::Viral infection is associated with a vigorous inflammatory response characterized by cellular infiltration and release of the proinflammatory cytokines interleukin-1 (IL-1) and tumor necrosis factor alpha (TNF-alpha). In the present study, we identified a novel function of human cytomegalovirus (HCMV) that results in ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00060-06

    authors: Jarvis MA,Borton JA,Keech AM,Wong J,Britt WJ,Magun BE,Nelson JA

    更新日期:2006-06-01 00:00:00

  • Identification of two distinct regions within the adenovirus minimal origin of replication that are required for adenovirus type 4 DNA replication in vitro.

    abstract::The adenovirus type 4 origins of replication are located at each end of the linear, protein-linked viral DNA molecule and consist of the terminal 18 bp of the viral genome. The sequence of the first 8 bp of the viral genome varies among different adenovirus serotypes, but the sequence from bp 9 to 18 is conserved in a...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.65.9.5037-5044.1991

    authors: Temperley SM,Burrow CR,Kelly TJ,Hay RT

    更新日期:1991-09-01 00:00:00

  • Human immunodeficiency virus type 1 gag-specific mucosal immunity after oral immunization with papillomavirus pseudoviruses encoding gag.

    abstract::Mucosal surfaces are the primary portals for human immunodeficiency virus (HIV) transmission. Because systemic immunization, in general, does not induce effective mucosal immune responses, a mucosal HIV vaccine is urgently needed. For this study, we developed papillomavirus pseudoviruses that express HIV-1 Gag. The ps...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.78.19.10249-10257.2004

    authors: Zhang H,Fayad R,Wang X,Quinn D,Qiao L

    更新日期:2004-10-01 00:00:00

  • Infection of polarized cultures of human intestinal epithelial cells with hepatitis A virus: vectorial release of progeny virions through apical cellular membranes.

    abstract::Although hepatitis A virus (HAV) is typically transmitted by the fecal-oral route, little is known of its interactions with cells of the gastrointestinal tract. We studied the replication of HAV in polarized cultures of Caco-2 cells, a human cell line which retains many differentiated functions of small intestinal epi...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.14.6476-6484.2000

    authors: Blank CA,Anderson DA,Beard M,Lemon SM

    更新日期:2000-07-01 00:00:00

  • Infection of nonhuman primates with recombinant human metapneumovirus lacking the SH, G, or M2-2 protein categorizes each as a nonessential accessory protein and identifies vaccine candidates.

    abstract::Recombinant human metapneumovirus (HMPV) in which the SH, G, or M2 gene or open reading frame was deleted by reverse genetics was evaluated for replication and vaccine efficacy following topical administration to the respiratory tract of African green monkeys, a permissive primate host. Replication of the deltaSH viru...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.19.12608-12613.2005

    authors: Biacchesi S,Pham QN,Skiadopoulos MH,Murphy BR,Collins PL,Buchholz UJ

    更新日期:2005-10-01 00:00:00