Draft genome sequence of Dyadobacter tibetensis type strain (Y620-1) isolated from glacial ice.

abstract：:Roseovarius mucosus Biebl et al. 2005 is a bacteriochlorophyll a-producing representative of the marine Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, which was isolated from the dinoflagellate Alexandrium ostenfeldii. The marine Roseobacter group was found to be abundant in the ocean and p...

journal_title：Standards in genomic sciences

authors： Riedel T,Spring S,Fiebig A,Scheuner C,Petersen J,Göker M,Klenk HP

更新日期：2015-03-19 00:00:00

abstract：:A strain of a hyperthermophilic filamentous archaeon was isolated from a sample of Kamchatka hot spring sediment. Isolate 1807-2 grew optimally at 85 °C, pH 6.0-6.5, the parameters being close to those at the sampling site. 16S rRNA gene sequence analysis placed the novel isolate in the crenarchaeal genus Thermofilum;...

journal_title：Standards in genomic sciences

authors： Toshchakov SV,Korzhenkov AA,Samarov NI,Mazunin IO,Mozhey OI,Shmyr IS,Derbikova KS,Taranov EA,Dominova IN,Bonch-Osmolovskaya EA,Patrushev MV,Podosokorskaya OA,Kublanov IV

更新日期：2015-12-09 00:00:00

abstract：:A lytic bacteriophage RG-2014 infecting a biofilm forming multidrug resistant bacterium Delftia tsuruhatensis strain ARB-1 as its host was isolated from a full-scale municipal wastewater treatment plant. Lytic phage RG-2014 was isolated for developing phage based therapeutic approaches against Delftia tsuruhatensis st...

journal_title：Standards in genomic sciences

authors： Bhattacharjee AS,Motlagh AM,Gilcrease EB,Islam MI,Casjens SR,Goel R

更新日期：2017-12-18 00:00:00

abstract：:Bacteria belonging to the genus Pectobacterium are responsible for soft rot disease on a wide range of cultivated crops. The "Pectobacterium peruviense" specie, recently proposed inside the Pectobacterium genus, gathers strains isolated from potato tubers cultivated in Peru at high altitude. Here we report the draft g...

journal_title：Standards in genomic sciences

authors： Faye P,Bertrand C,Pédron J,Barny MA

更新日期：2018-10-12 00:00:00

abstract：:Lutibacter profundi LP1T within the family Flavobacteriaceae was isolated from a biofilm growing on the surface of a black smoker chimney at the Loki's Castle vent field, located on the Arctic Mid-Ocean Ridge. The complete genome of L. profundi LP1T is the first genome to be published within the genus Lutibacter. L. p...

journal_title：Standards in genomic sciences

authors： Wissuwa J,Bauer SL,Steen IH,Stokke R

更新日期：2017-01-07 00:00:00

abstract：:Desulfurobacterium thermolithotrophum L'Haridon et al. 1998 is the type species of the genus Desulfurobacterium which belongs to the family Desulfurobacteriaceae. The species is of interest because it represents the first thermophilic bacterium that can act as a primary producer in the temperature range of 45-75 °C (o...

journal_title：Standards in genomic sciences

authors： Göker M,Daligault H,Mwirichia R,Lapidus A,Lucas S,Deshpande S,Pagani I,Tapia R,Cheng JF,Goodwin L,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Han C,Land M,Hauser L,Pan C,

更新日期：2011-12-31 00:00:00

abstract：:This report summarizes the proceedings of the second workshop of the 'Minimum Information for Biological and Biomedical Investigations' (MIBBI) consortium held on Dec 1-2, 2010 in Rüdesheim, Germany through the sponsorship of the Beilstein-Institute. MIBBI is an umbrella organization uniting communities developing Min...

journal_title：Standards in genomic sciences

authors： Kettner C,Field D,Sansone SA,Taylor C,Aerts J,Binns N,Blake A,Britten CM,de Marco A,Fostel J,Gaudet P,González-Beltrán A,Hardy N,Hellemans J,Hermjakob H,Juty N,Leebens-Mack J,Maguire E,Neumann S,Orchard S,Parkinso

更新日期：2010-12-25 00:00:00

abstract：:Microvirga lupini LUT6(T) is an aerobic, non-motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Lupinus texensis. LUT6(T) was isolated in 2006 from a nodule recovered from the roots of the annual L. texensis growing in Travis Co., Texas. LUT6(T) forms a hig...

journal_title：Standards in genomic sciences

authors： Reeve W,Parker M,Tian R,Goodwin L,Teshima H,Tapia R,Han C,Han J,Liolios K,Huntemann M,Pati A,Woyke T,Mavromatis K,Markowitz V,Ivanova N,Kyrpides N

更新日期：2014-03-01 00:00:00

abstract：:'Treponema phagedenis' is considered to be a key agent in the pathogenesis of bovine digital dermatitis, an infectious foot condition of economic and animal welfare importance. We hereby report the draft sequence of 'T. phagedenis' strain V1. The draft genome assembly consists of 51 scaffolds comprising 3,129,551 bp a...

journal_title：Standards in genomic sciences

authors： Mushtaq M,Manzoor S,Pringle M,Rosander A,Bongcam-Rudloff E

更新日期：2015-09-21 00:00:00

abstract：:Alistipes obesi sp. nov. strain ph8(T) is the type strain of A. obesi, a new species within the genus Alistipes. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. A. obesi is an obligately anaerobic rod. Here we describe the features of...

journal_title：Standards in genomic sciences

authors： Hugon P,Ramasamy D,Lagier JC,Rivet R,Couderc C,Raoult D,Fournier PE

更新日期：2013-02-25 00:00:00

abstract：:Nereida ignava strain 2SM4(T) (= CECT 5292(T) = DSM 16309(T) = CIP 108404(T) = CCUG 49433(T)) is a marine bacterium belonging to the Roseobacter group of the family Rhodobacteraceae within the class Alphaproteobacteria. The strain was isolated from sea water surrounding cultivated oysters 2-3 miles off the Mediterrane...

journal_title：Standards in genomic sciences

authors： Arahal DR,Pujalte MJ,Rodrigo-Torres L

更新日期：2016-02-29 00:00:00

abstract：:Enorma massiliensis strain phI(T) is the type strain of E. massiliensis gen. nov., sp. nov., the type species of a new genus within the family Coriobacteriaceae, Enorma gen. nov. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. E. mass...

journal_title：Standards in genomic sciences

authors： Mishra AK,Hugon P,Lagier JC,Nguyen TT,Couderc C,Raoult D,Fournier PE

更新日期：2013-06-06 00:00:00

abstract：:Thioalkalivibrio thiocyanoxidans strain ARh 2(T) is a sulfur-oxidizing bacterium isolated from haloalkaline soda lakes. It is a motile, Gram-negative member of the Gammaproteobacteria. Remarkable properties include the ability to grow on thiocyanate as the sole energy, sulfur and nitrogen source, and the capability of...

journal_title：Standards in genomic sciences

authors： Berben T,Sorokin DY,Ivanova N,Pati A,Kyrpides N,Goodwin LA,Woyke T,Muyzer G

更新日期：2015-10-26 00:00:00

abstract：:Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because...

journal_title：Standards in genomic sciences

authors： Anderson IJ,DasSarma P,Lucas S,Copeland A,Lapidus A,Del Rio TG,Tice H,Dalin E,Bruce DC,Goodwin L,Pitluck S,Sims D,Brettin TS,Detter JC,Han CS,Larimer F,Hauser L,Land M,Ivanova N,Richardson P,Cavicchioli R,DasSar

更新日期：2016-09-10 00:00:00

abstract：:Strain HIMB11 is a planktonic marine bacterium isolated from coastal seawater in Kaneohe Bay, Oahu, Hawaii belonging to the ubiquitous and versatile Roseobacter clade of the alphaproteobacterial family Rhodobacteraceae. Here we describe the preliminary characteristics of strain HIMB11, including annotation of the draf...

journal_title：Standards in genomic sciences

authors： Durham BP,Grote J,Whittaker KA,Bender SJ,Luo H,Grim SL,Brown JM,Casey JR,Dron A,Florez-Leiva L,Krupke A,Luria CM,Mine AH,Nigro OD,Pather S,Talarmin A,Wear EK,Weber TS,Wilson JM,Church MJ,DeLong EF,Karl DM,Stew

更新日期：2014-03-15 00:00:00

abstract：:Mahella australiensis Bonilla Salinas et al. 2004 is the type species of the genus Mahella, which belongs to the family Thermoanaerobacteraceae. The species is of interest because it differs from other known anaerobic spore-forming bacteria in its G+C content, and in certain phenotypic traits, such as carbon source ut...

journal_title：Standards in genomic sciences

authors： Sikorski J,Teshima H,Nolan M,Lucas S,Hammon N,Deshpande S,Cheng JF,Pitluck S,Liolios K,Pagani I,Ivanova N,Huntemann M,Mavromatis K,Ovchinikova G,Pati A,Tapia R,Han C,Goodwin L,Chen A,Palaniappan K,Land M,Hauser

更新日期：2011-07-01 00:00:00

abstract：:Herein, we report the draft-genome sequences and annotation of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from humans. One strain (SC-57) was isolated from blood from a male patient in May 2006 and the other (SC-532) from a catheter from a male patient in June 2006. Similar to other genomes...

journal_title：Standards in genomic sciences

authors： Mendoza-Olazarán S,Garcia-Mazcorro JF,Morfín-Otero R,Villarreal-Treviño L,Camacho-Ortiz A,Rodríguez-Noriega E,Bocanegra-Ibarias P,Maldonado-Garza HJ,Dowd SE,Garza-González E

更新日期：2017-08-31 00:00:00

abstract：:In this study, following its isolation from contaminated soil, the genomic sequence of Pseudomonas alcaliphila strain JAB1 (=DSM 26533), a biphenyl-degrading bacterium, is reported and analyzed in relation to its extensive degradative capabilities. The P. alcaliphila JAB1 genome (GenBank accession no. CP016162) consis...

journal_title：Standards in genomic sciences

authors： Ridl J,Suman J,Fraraccio S,Hradilova M,Strejcek M,Cajthaml T,Zubrova A,Macek T,Strnad H,Uhlik O

更新日期：2018-02-01 00:00:00

abstract：:Methanoculleus bourgensis strain MAB1 has been identified as the hydrogenotrophic partner of mesophilic acetate-oxidising bacteria, a syntrophic relationship operating close to the thermodynamic equilibrium and of considerable importance in ammonia-rich engineered biogas processes. Methanoculleus bourgensis strain MAB...

journal_title：Standards in genomic sciences

authors： Manzoor S,Schnürer A,Bongcam-Rudloff E,Müller B

更新日期：2016-10-12 00:00:00

abstract：:Bacteroides coprosuis Whitehead et al. 2005 belongs to the genus Bacteroides, which is a member of the family Bacteroidaceae. Members of the genus Bacteroides in general are known as beneficial protectors of animal guts against pathogenic microorganisms, and as contributors to the degradation of complex molecules such...

journal_title：Standards in genomic sciences

authors： Land M,Held B,Gronow S,Abt B,Lucas S,Del Rio TG,Nolan M,Tice H,Cheng JF,Pitluck S,Liolios K,Pagani I,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Tapia R,Han C,Goodwin L,Chen A,Palaniappan K,Hauser L,Brambilla E

更新日期：2011-04-29 00:00:00

abstract：:The tenacious association between strains of the heterotrophic alphaproteobacterial genus Acidiphilium and chemolithotrophic iron oxidizing bacteria has long been known. In this context the genome of the heterotroph Acidiphilium sp. JA12-A1, an isolate from an iron oxidizing mixed culture derived from a pilot plant fo...

journal_title：Standards in genomic sciences

authors： Ullrich SR,Poehlein A,Voget S,Hoppert M,Daniel R,Leimbach A,Tischler JS,Schlömann M,Mühling M

更新日期：2015-08-19 00:00:00

abstract：:Agromyces aureus AR33T is a Gram-positive, rod-shaped and motile bacterium belonging to the Microbacteriaceae family in the phylum Actinobacteria that was isolated from a former zinc/lead mining and processing site in Austria. In this study, the whole genome was sequenced and assembled combining sequences obtained fro...

journal_title：Standards in genomic sciences

authors： Corretto E,Antonielli L,Sessitsch A,Compant S,Höfer C,Puschenreiter M,Brader G

更新日期：2017-01-05 00:00:00

abstract：:This report details the outcome of the 13(th) Meeting of the Genomic Standards Consortium. The three-day conference was held at the Kingkey Palace Hotel, Shenzhen, China, on March 5-7, 2012, and was hosted by the Beijing Genomics Institute. The meeting, titled From Genomes to Interactions to Communities to Models, hig...

journal_title：Standards in genomic sciences

authors： Gilbert JA,Bao Y,Wang H,Sansone SA,Edmunds SC,Morrison N,Meyer F,Schriml LM,Davies N,Sterk P,Wilkening J,Garrity GM,Field D,Robbins R,Smith DP,Mizrachi I,Moreau C

更新日期：2012-05-25 00:00:00

abstract：:Syntrophobacter fumaroxidans strain MPOB(T) is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H2 and CO2 during the overall degradation of organic matter, and its release of pro...

journal_title：Standards in genomic sciences

authors： Plugge CM,Henstra AM,Worm P,Swarts DC,Paulitsch-Fuchs AH,Scholten JC,Lykidis A,Lapidus AL,Goltsman E,Kim E,McDonald E,Rohlin L,Crable BR,Gunsalus RP,Stams AJ,McInerney MJ

更新日期：2012-10-10 00:00:00

abstract：:Mesotoga strain PhosAc3 was the first mesophilic cultivated member of the order Thermotogales. This genus currently contain two described species, M. prima and M. infera. Strain PhosAc3, isolated from a Tunisian digestor treating phosphogypsum, is phylogenetically closely related to M. prima strain MesG1.Ag.4.2(T). St...

journal_title：Standards in genomic sciences

authors： Ben Hania W,Fadhlaoui K,Brochier-Armanet C,Persillon C,Postec A,Hamdi M,Dolla A,Ollivier B,Fardeau ML,Le Mer J,Erauso G

更新日期：2015-05-01 00:00:00

abstract：:Thermosediminibacter oceani (Lee et al. 2006) is the type species of the genus Thermosediminibacter in the family Thermoanaerobacteraceae. The anaerobic, barophilic, chemoorganotrophic thermophile is characterized by straight to curved Gram-negative rods. The strain described in this study was isolated from a core sam...

journal_title：Standards in genomic sciences

authors： Pitluck S,Yasawong M,Munk C,Nolan M,Lapidus A,Lucas S,Glavina Del Rio T,Tice H,Cheng JF,Bruce D,Detter C,Tapia R,Han C,Goodwin L,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Land M,

更新日期：2010-09-28 00:00:00

abstract：:Brachyspira murdochii Stanton et al. 1992 is a non-pathogenic, host-associated spirochete of the family Brachyspiraceae. Initially isolated from the intestinal content of a healthy swine, the 'group B spirochaetes' were first described as Serpulina murdochii. Members of the family Brachyspiraceae are of great phylogen...

journal_title：Standards in genomic sciences

authors： Pati A,Sikorski J,Gronow S,Munk C,Lapidus A,Copeland A,Glavina Del Tio T,Nolan M,Lucas S,Chen F,Tice H,Cheng JF,Han C,Detter JC,Bruce D,Tapia R,Goodwin L,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,

更新日期：2010-06-15 00:00:00

abstract：:This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elemental sulfur to H2S...

journal_title：Standards in genomic sciences

authors： Susanti D,Johnson EF,Lapidus A,Han J,Reddy TB,Pilay M,Ivanova NN,Markowitz VM,Woyke T,Kyrpides NC,Mukhopadhyay B

更新日期：2016-01-13 00:00:00

abstract：:Natrinema altunense strain AJ2T, a halophilic archaeal strain, was isolated from a high-altitude (3884 m) salt lake in Xinjiang, China. This strain requires at least 1.7 M NaCl to grow and can grow anaerobically in the presence of nitrate. To understand the genetics underlying its extreme phenotype, we de novo assembl...

journal_title：Standards in genomic sciences

authors： Cheng H,Huo YY,Hu J,Xu XW,Wu M

更新日期：2017-03-01 00:00:00

abstract：:Candidatus Arsenophonus lipopteni (Enterobacteriaceae, Gammaproteobacteria) is an obligate intracellular symbiont of the blood feeding deer ked, Lipoptena cervi (Diptera: Hippoboscidae). The bacteria reside in specialized cells derived from host gut epithelia (bacteriocytes) forming a compact symbiotic organ (bacterio...

journal_title：Standards in genomic sciences

authors： Nováková E,Hypša V,Nguyen P,Husník F,Darby AC

更新日期：2016-09-17 00:00:00