Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012.

abstract：:Ensifer (Sinorhizobium) medicae is an effective nitrogen fixing microsymbiont of a diverse range of annual Medicago (medic) species. Strain WSM419 is an aerobic, motile, non-spore forming, Gram-negative rod isolated from a M. murex root nodule collected in Sardinia, Italy in 1981. WSM419 was manufactured commercially ...

journal_title：Standards in genomic sciences

authors： Reeve W,Chain P,O'Hara G,Ardley J,Nandesena K,Bräu L,Tiwari R,Malfatti S,Kiss H,Lapidus A,Copeland A,Nolan M,Land M,Hauser L,Chang YJ,Ivanova N,Mavromatis K,Markowitz V,Kyrpides N,Gollagher M,Yates R,Dilworth M

更新日期：2010-01-28 00:00:00

abstract：:Burkholderia sp. strain WSM2230 is an aerobic, motile, Gram-negative, non-spore-forming acid-tolerant rod isolated from acidic soil collected in 2001 from Karijini National Park, Western Australia, using Kennedia coccinea (Coral Vine) as a host. WSM2230 was initially effective in nitrogen-fixation with K. coccinea, bu...

journal_title：Standards in genomic sciences

authors： Walker R,Watkin E,Tian R,Bräu L,O'Hara G,Goodwin L,Han J,Lobos E,Huntemann M,Pati A,Woyke T,Mavromatis K,Markowitz V,Ivanova N,Kyrpides N,Reeve W

更新日期：2013-12-31 00:00:00

abstract：:The bacterium Vibrio ordalii is best known as the causative agent of vibriosis outbreaks in fish and thus recognized for generating serious production losses in aquaculture systems. Here we report for the first time on the isolation and the genome sequencing of phage vB_VorS-PVo5, infectious to Vibrio ordalii ATCC 335...

journal_title：Standards in genomic sciences

authors： Echeverría-Vega A,Morales-Vicencio P,Saez-Saavedra C,Ceh J,Araya R

更新日期：2016-07-04 00:00:00

abstract：:Strain CCMM B554, also known as FSM-MA, is a soil dwelling and nodule forming, nitrogen-fixing bacterium isolated from the nodules of the legume Medicago arborea L. in the Maamora Forest, Morocco. The strain forms effective nitrogen fixing nodules on species of the Medicago, Melilotus and Trigonella genera and is exce...

journal_title：Standards in genomic sciences

authors： Nagymihály M,Vásarhelyi BM,Barrière Q,Chong TM,Bálint B,Bihari P,Hong KW,Horváth B,Ibijbijen J,Amar M,Farkas A,Kondorosi É,Chan KG,Gruber V,Ratet P,Mergaert P,Kereszt A

更新日期：2017-12-13 00:00:00

abstract：:Microvirga lupini LUT6(T) is an aerobic, non-motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Lupinus texensis. LUT6(T) was isolated in 2006 from a nodule recovered from the roots of the annual L. texensis growing in Travis Co., Texas. LUT6(T) forms a hig...

journal_title：Standards in genomic sciences

authors： Reeve W,Parker M,Tian R,Goodwin L,Teshima H,Tapia R,Han C,Han J,Liolios K,Huntemann M,Pati A,Woyke T,Mavromatis K,Markowitz V,Ivanova N,Kyrpides N

更新日期：2014-03-01 00:00:00

abstract：:Litoreibacter arenae Kim et al. 2012 is a member of the genomically well-characterized Rhodobacteraceae clade within the Roseobacter clade. Representatives of this clade are known to be metabolically versatile and involved in marine carbon-producing and biogeochemical processes. They form a physiologically heterogeneo...

journal_title：Standards in genomic sciences

authors： Riedel T,Fiebig A,Petersen J,Gronow S,Kyrpides NC,Göker M,Klenk HP

更新日期：2013-10-01 00:00:00

abstract：:Thermus brockianus strain GE-1 is a thermophilic, Gram-negative, rod-shaped and non-motile bacterium that was isolated from the Geysir geothermal area, Iceland. Like other thermophiles, Thermus species are often used as model organisms to understand the mechanism of action of extremozymes, especially focusing on their...

journal_title：Standards in genomic sciences

authors： Schäfers C,Blank S,Wiebusch S,Elleuche S,Antranikian G

更新日期：2017-02-03 00:00:00

abstract：:The nonheterocystous filamentous cyanobacterium, strain ESFC-1, is a recently described member of the order Oscillatoriales within the Cyanobacteria. ESFC-1 has been shown to be a major diazotroph in the intertidal microbial mat system at Elkhorn Slough, CA, USA. Based on phylogenetic analyses of the 16S RNA gene, ESF...

journal_title：Standards in genomic sciences

authors： Everroad RC,Stuart RK,Bebout BM,Detweiler AM,Lee JZ,Woebken D,Prufert-Bebout L,Pett-Ridge J

更新日期：2016-08-24 00:00:00

abstract：:Strain M27-SA2 was isolated from the deep-sea salt-saturated anoxic lake Medee, which represents one of the most hostile extreme environments on our planet. On the basis of physiological studies and phylogenetic positioning this extremely halophilic euryarchaeon belongs to a novel genus 'Halanaeroarchaeum' within the ...

journal_title：Standards in genomic sciences

authors： Messina E,Sorokin DY,Kublanov IV,Toshchakov S,Lopatina A,Arcadi E,Smedile F,La Spada G,La Cono V,Yakimov MM

更新日期：2016-05-13 00:00:00

abstract：:Candidatus Arsenophonus lipopteni (Enterobacteriaceae, Gammaproteobacteria) is an obligate intracellular symbiont of the blood feeding deer ked, Lipoptena cervi (Diptera: Hippoboscidae). The bacteria reside in specialized cells derived from host gut epithelia (bacteriocytes) forming a compact symbiotic organ (bacterio...

journal_title：Standards in genomic sciences

authors： Nováková E,Hypša V,Nguyen P,Husník F,Darby AC

更新日期：2016-09-17 00:00:00

abstract：:Enorma massiliensis strain phI(T) is the type strain of E. massiliensis gen. nov., sp. nov., the type species of a new genus within the family Coriobacteriaceae, Enorma gen. nov. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. E. mass...

journal_title：Standards in genomic sciences

authors： Mishra AK,Hugon P,Lagier JC,Nguyen TT,Couderc C,Raoult D,Fournier PE

更新日期：2013-06-06 00:00:00

abstract：:Strain HIMB11 is a planktonic marine bacterium isolated from coastal seawater in Kaneohe Bay, Oahu, Hawaii belonging to the ubiquitous and versatile Roseobacter clade of the alphaproteobacterial family Rhodobacteraceae. Here we describe the preliminary characteristics of strain HIMB11, including annotation of the draf...

journal_title：Standards in genomic sciences

authors： Durham BP,Grote J,Whittaker KA,Bender SJ,Luo H,Grim SL,Brown JM,Casey JR,Dron A,Florez-Leiva L,Krupke A,Luria CM,Mine AH,Nigro OD,Pather S,Talarmin A,Wear EK,Weber TS,Wilson JM,Church MJ,DeLong EF,Karl DM,Stew

更新日期：2014-03-15 00:00:00

abstract：:Mycoplasma testudineum is one of the pathogens that can cause upper respiratory tract disease in desert tortoises, Gopherus agassizii. We sequenced the genome of M. testudineum BH29T (ATCC 700618T = MCCM 03231T), isolated from the upper respiratory tract of a Mojave desert tortoise with upper respiratory tract disease...

journal_title：Standards in genomic sciences

authors： Weitzman CL,Tillett RL,Sandmeier FC,Tracy CR,Alvarez-Ponce D

更新日期：2018-04-11 00:00:00

abstract：:'Treponema phagedenis' is considered to be a key agent in the pathogenesis of bovine digital dermatitis, an infectious foot condition of economic and animal welfare importance. We hereby report the draft sequence of 'T. phagedenis' strain V1. The draft genome assembly consists of 51 scaffolds comprising 3,129,551 bp a...

journal_title：Standards in genomic sciences

authors： Mushtaq M,Manzoor S,Pringle M,Rosander A,Bongcam-Rudloff E

更新日期：2015-09-21 00:00:00

abstract：:Roseovarius mucosus Biebl et al. 2005 is a bacteriochlorophyll a-producing representative of the marine Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, which was isolated from the dinoflagellate Alexandrium ostenfeldii. The marine Roseobacter group was found to be abundant in the ocean and p...

journal_title：Standards in genomic sciences

authors： Riedel T,Spring S,Fiebig A,Scheuner C,Petersen J,Göker M,Klenk HP

更新日期：2015-03-19 00:00:00

abstract：:Brachyspira murdochii Stanton et al. 1992 is a non-pathogenic, host-associated spirochete of the family Brachyspiraceae. Initially isolated from the intestinal content of a healthy swine, the 'group B spirochaetes' were first described as Serpulina murdochii. Members of the family Brachyspiraceae are of great phylogen...

journal_title：Standards in genomic sciences

authors： Pati A,Sikorski J,Gronow S,Munk C,Lapidus A,Copeland A,Glavina Del Tio T,Nolan M,Lucas S,Chen F,Tice H,Cheng JF,Han C,Detter JC,Bruce D,Tapia R,Goodwin L,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,

更新日期：2010-06-15 00:00:00

abstract：:Alistipes obesi sp. nov. strain ph8(T) is the type strain of A. obesi, a new species within the genus Alistipes. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. A. obesi is an obligately anaerobic rod. Here we describe the features of...

journal_title：Standards in genomic sciences

authors： Hugon P,Ramasamy D,Lagier JC,Rivet R,Couderc C,Raoult D,Fournier PE

更新日期：2013-02-25 00:00:00

abstract：:Spirosoma linguale Migula 1894 is the type species of the genus. S. linguale is a free-living and non-pathogenic organism, known for its peculiar ringlike and horseshoe-shaped cell morphology. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is only the th...

journal_title：Standards in genomic sciences

authors： Lail K,Sikorski J,Saunders E,Lapidus A,Glavina Del Rio T,Copeland A,Tice H,Cheng JF,Lucas S,Nolan M,Bruce D,Goodwin L,Pitluck S,Ivanova N,Mavromatis K,Ovchinnikova G,Pati A,Chen A,Palaniappan K,Land M,Hauser L,C

更新日期：2010-03-30 00:00:00

abstract：:Kurthia senegalensis strain JC8E(T) sp. nov. is the type strain of K. senegalensis sp. nov., a new species within the genus Kurthia. This strain, whose genome is described here, was isolated from the fecal flora of a healthy patient. K. senegalensis is an aerobic rod. Here we describe the features of this organism, to...

journal_title：Standards in genomic sciences

authors： Roux V,Lagier JC,Gorlas A,Robert C,Raoult D

更新日期：2014-02-20 00:00:00

abstract：:In this study, following its isolation from contaminated soil, the genomic sequence of Pseudomonas alcaliphila strain JAB1 (=DSM 26533), a biphenyl-degrading bacterium, is reported and analyzed in relation to its extensive degradative capabilities. The P. alcaliphila JAB1 genome (GenBank accession no. CP016162) consis...

journal_title：Standards in genomic sciences

authors： Ridl J,Suman J,Fraraccio S,Hradilova M,Strejcek M,Cajthaml T,Zubrova A,Macek T,Strnad H,Uhlik O

更新日期：2018-02-01 00:00:00

abstract：:Although the hemipterans (Aphididae) are comprised of roughly 50,000 extant insect species, only four have sequenced genomes that are publically available, namely Acyrthosiphon pisum (pea aphid), Rhodnius prolixus (Kissing bug), Myzus persicae (Green peach aphid) and Diuraphis noxia (Russian wheat aphid). As a signifi...

journal_title：Standards in genomic sciences

authors： Burger NFV,Botha AM

更新日期：2017-12-28 00:00:00

abstract：:Flavihumibacter solisilvae 3-3(T) (= KACC 17917(T) = JCM 19891(T)) represents a type strain of the genus Flavihumibacter within the family Chitinophagaceae. This strain can use various sole carbon sources, making it applicable in industry and bioremediation. In this study, the draft genomic information of F. solisilva...

journal_title：Standards in genomic sciences

authors： Zhou G,Chen C,Jeon CO,Wang G,Li M

更新日期：2015-09-19 00:00:00

abstract：:Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. H. utahensis is a free-living, motile, rod shaped to pleomorphic, Gram-negative archaeon, wh...

journal_title：Standards in genomic sciences

authors： Anderson I,Tindall BJ,Pomrenke H,Göker M,Lapidus A,Nolan M,Copeland A,Glavina Del Rio T,Chen F,Tice H,Cheng JF,Lucas S,Chertkov O,Bruce D,Brettin T,Detter JC,Han C,Goodwin L,Land M,Hauser L,Chang YJ,Jeffries CD

更新日期：2009-11-22 00:00:00

abstract：:Phaeobacter arcticus Zhang et al. 2008 belongs to the marine Roseobacter clade whose members are phylogenetically and physiologically diverse. In contrast to the type species of this genus, Phaeobacter gallaeciensis, which is well characterized, relatively little is known about the characteristics of P. arcticus. Here...

journal_title：Standards in genomic sciences

authors： Freese HM,Dalingault H,Petersen J,Pradella S,Davenport K,Teshima H,Chen A,Pati A,Ivanova N,Goodwin LA,Chain P,Detter JC,Rohde M,Gronow S,Kyrpides NC,Woyke T,Brinkhoff T,Göker M,Overmann J,Klenk HP

更新日期：2013-07-30 00:00:00

abstract：:Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because...

journal_title：Standards in genomic sciences

authors： Anderson IJ,DasSarma P,Lucas S,Copeland A,Lapidus A,Del Rio TG,Tice H,Dalin E,Bruce DC,Goodwin L,Pitluck S,Sims D,Brettin TS,Detter JC,Han CS,Larimer F,Hauser L,Land M,Ivanova N,Richardson P,Cavicchioli R,DasSar

更新日期：2016-09-10 00:00:00

abstract：:Pedobacter steynii DX4 was isolated from the soil of Tibetan Plateau and it can use crude oil as sole carbon and energy source at 15 °C. The genome of Pedobacter steynii DX4 has been sequenced and served as basis for analysis its metabolic mechanism. It is the first genome of crude oil degrading strain in Pedobacter g...

journal_title：Standards in genomic sciences

authors： Chang S,Zhang G,Chen X,Long H,Wang Y,Chen T,Liu G

更新日期：2017-07-27 00:00:00

abstract：:Chryseobacterium bovis DSM 19482T (Hantsis-Zacharov et al., Int J Syst Evol Microbiol 58:1024-1028, 2008) is a Gram-negative, rod shaped, non-motile, facultative anaerobe, chemoorganotroph bacterium. C. bovis is a member of the Flavobacteriaceae, a family within the phylum Bacteroidetes. It was isolated when psychroto...

journal_title：Standards in genomic sciences

authors： Laviad-Shitrit S,Göker M,Huntemann M,Clum A,Pillay M,Palaniappan K,Varghese N,Mikhailova N,Stamatis D,Reddy TBK,Daum C,Shapiro N,Markowitz V,Ivanova N,Woyke T,Klenk HP,Kyrpides NC,Halpern M

更新日期：2017-05-08 00:00:00

abstract：:Agromyces aureus AR33T is a Gram-positive, rod-shaped and motile bacterium belonging to the Microbacteriaceae family in the phylum Actinobacteria that was isolated from a former zinc/lead mining and processing site in Austria. In this study, the whole genome was sequenced and assembled combining sequences obtained fro...

journal_title：Standards in genomic sciences

authors： Corretto E,Antonielli L,Sessitsch A,Compant S,Höfer C,Puschenreiter M,Brader G

更新日期：2017-01-05 00:00:00

abstract：:Nereida ignava strain 2SM4(T) (= CECT 5292(T) = DSM 16309(T) = CIP 108404(T) = CCUG 49433(T)) is a marine bacterium belonging to the Roseobacter group of the family Rhodobacteraceae within the class Alphaproteobacteria. The strain was isolated from sea water surrounding cultivated oysters 2-3 miles off the Mediterrane...

journal_title：Standards in genomic sciences

authors： Arahal DR,Pujalte MJ,Rodrigo-Torres L

更新日期：2016-02-29 00:00:00

abstract：:Sphingomonas paucimobilis strain LCT-SP1 is a glucose-nonfermenting Gram-negative, chemoheterotrophic, strictly aerobic bacterium. The major feature of strain LCT-SP1, isolated from the Chinese spacecraft Shenzhou X, together with the genome draft and annotation are described in this paper. The total size of strain LC...

journal_title：Standards in genomic sciences

authors： Pan L,Zhou H,Li J,Huang B,Guo J,Zhang XL,Gao LC,Xu C,Liu CT

更新日期：2016-02-24 00:00:00