Abstract:
:Nereida ignava strain 2SM4(T) (= CECT 5292(T) = DSM 16309(T) = CIP 108404(T) = CCUG 49433(T)) is a marine bacterium belonging to the Roseobacter group of the family Rhodobacteraceae within the class Alphaproteobacteria. The strain was isolated from sea water surrounding cultivated oysters 2-3 miles off the Mediterranean coast near Valencia (Spain) and was phylogenetically related to uncultured clones of gall symbiont bacteria of some species of Prionitis alga. Here we describe the genome sequence and annotation of this organism, the type strain of the single species of this genus. The genome comprised 2,888,349 bp, 2,872 protein-coding genes and 52 RNA genes. The annotation revealed the capacity to produce bacteriocins, vitamins and auxins. Besides, it contained sulfur cycling related genes.
journal_name
Stand Genomic Scijournal_title
Standards in genomic sciencesauthors
Arahal DR,Pujalte MJ,Rodrigo-Torres Ldoi
10.1186/s40793-016-0141-2subject
Has Abstractpub_date
2016-02-29 00:00:00pages
21issn
1944-3277pii
141journal_volume
11pub_type
abstract::Although the hemipterans (Aphididae) are comprised of roughly 50,000 extant insect species, only four have sequenced genomes that are publically available, namely Acyrthosiphon pisum (pea aphid), Rhodnius prolixus (Kissing bug), Myzus persicae (Green peach aphid) and Diuraphis noxia (Russian wheat aphid). As a signifi...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0307-6
更新日期:2017-12-28 00:00:00
abstract::Kurthia senegalensis strain JC8E(T) sp. nov. is the type strain of K. senegalensis sp. nov., a new species within the genus Kurthia. This strain, whose genome is described here, was isolated from the fecal flora of a healthy patient. K. senegalensis is an aerobic rod. Here we describe the features of this organism, to...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.5078947
更新日期:2014-02-20 00:00:00
abstract::Lutibacter profundi LP1T within the family Flavobacteriaceae was isolated from a biofilm growing on the surface of a black smoker chimney at the Loki's Castle vent field, located on the Arctic Mid-Ocean Ridge. The complete genome of L. profundi LP1T is the first genome to be published within the genus Lutibacter. L. p...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-016-0219-x
更新日期:2017-01-07 00:00:00
abstract::Alistipes obesi sp. nov. strain ph8(T) is the type strain of A. obesi, a new species within the genus Alistipes. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. A. obesi is an obligately anaerobic rod. Here we describe the features of...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.3336746
更新日期:2013-02-25 00:00:00
abstract::Flavihumibacter solisilvae 3-3(T) (= KACC 17917(T) = JCM 19891(T)) represents a type strain of the genus Flavihumibacter within the family Chitinophagaceae. This strain can use various sole carbon sources, making it applicable in industry and bioremediation. In this study, the draft genomic information of F. solisilva...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.1186/s40793-015-0037-6
更新日期:2015-09-19 00:00:00
abstract::Pedobacter steynii DX4 was isolated from the soil of Tibetan Plateau and it can use crude oil as sole carbon and energy source at 15 °C. The genome of Pedobacter steynii DX4 has been sequenced and served as basis for analysis its metabolic mechanism. It is the first genome of crude oil degrading strain in Pedobacter g...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0249-z
更新日期:2017-07-27 00:00:00
abstract::Staphylococcus cohnii subsp. cohnii belongs to the family Staphylococcaceae in the order Bacillales, class Bacilli and phylum Firmicutes. The increasing relevance of S. cohnii to human health prompted us to determine the genomic sequence of Staphylococcus cohnii subsp. cohnii strain hu-01, a multidrug-resistant isolat...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.5429581
更新日期:2014-03-15 00:00:00
abstract::Methylibium sp. strain T29 was isolated from a gasoline-contaminated aquifer and proved to have excellent capabilities in degrading some common fuel oxygenates like methyl tert-butyl ether, tert-amyl methyl ether and tert-butyl alcohol along with other organic compounds. Here, we report the draft genome sequence of M....
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.1186/s40793-015-0023-z
更新日期:2015-07-19 00:00:00
abstract::Cronobacter sakazakii is a Gram-negative opportunistic pathogen that causes life- threatening infantile infections, such as meningitis, septicemia, and necrotizing enterocolitis, as well as pneumonia, septicemia, and urinary tract and wound infections in adults. Here, we report 26 draft genome sequences of C. sakazaki...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-018-0339-6
更新日期:2018-11-29 00:00:00
abstract::Thiobacillus thioparus DSM 505T is one of first two isolated strains of inorganic sulfur-oxidising Bacteria. The original strain of T. thioparus was lost almost 100 years ago and the working type strain is Culture CT (=DSM 505T = ATCC 8158T) isolated by Starkey in 1934 from agricultural soil at Rutgers University, New...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0229-3
更新日期:2017-01-19 00:00:00
abstract::Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft genome sequence and ann...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.1186/s40793-015-0052-7
更新日期:2015-08-13 00:00:00
abstract::Litoreibacter arenae Kim et al. 2012 is a member of the genomically well-characterized Rhodobacteraceae clade within the Roseobacter clade. Representatives of this clade are known to be metabolically versatile and involved in marine carbon-producing and biogeochemical processes. They form a physiologically heterogeneo...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.4258318
更新日期:2013-10-01 00:00:00
abstract::Rhizobium leguminosarum bv. trifolii SRDI943 (strain syn. V2-2) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Trifolium michelianum Savi cv. Paradana that had been grown in soil collected from a mixed pasture in Victoria, Australia. This isolate was found to have a...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.4478252
更新日期:2013-12-15 00:00:00
abstract::Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-016-0194-2
更新日期:2016-09-10 00:00:00
abstract::Microvirga lupini LUT6(T) is an aerobic, non-motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Lupinus texensis. LUT6(T) was isolated in 2006 from a nodule recovered from the roots of the annual L. texensis growing in Travis Co., Texas. LUT6(T) forms a hig...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.5249382
更新日期:2014-03-01 00:00:00
abstract::A lytic bacteriophage RG-2014 infecting a biofilm forming multidrug resistant bacterium Delftia tsuruhatensis strain ARB-1 as its host was isolated from a full-scale municipal wastewater treatment plant. Lytic phage RG-2014 was isolated for developing phage based therapeutic approaches against Delftia tsuruhatensis st...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0290-y
更新日期:2017-12-18 00:00:00
abstract::As causal agents of bacterial wilt in pastures and meadows, bacteria of the species Xanthomonas translucens are a serious issue in forage grass production. So far, only little is known about host-pathogen interactions at the molecular level and the lack of comprehensive genome data impeded targeted breeding strategies...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-016-0170-x
更新日期:2016-08-17 00:00:00
abstract::Enterobacter mori strain 5-4 is a Gram-negative, motile, rod shaped, and facultatively anaerobic bacterium, which was isolated from a mixture of formation water (also known as oil-reservior water) and crude-oil in Karamay oilfield, China. To date, there is only one E. mori genome has been sequenced and very little kno...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.1186/1944-3277-10-9
更新日期:2015-02-27 00:00:00
abstract::Phage ST0 lysing Escherichia coli H8 was isolated from wastewater and sequenced using an Illumina HiSeq system. Genomic analyses revealed that it was virulent phages and contained a circular double-stranded DNA genome, consisting of 170,496 nucleotides with an average G + C content of 37.67%. This study may provide po...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0304-9
更新日期:2017-12-19 00:00:00
abstract::Spirosoma linguale Migula 1894 is the type species of the genus. S. linguale is a free-living and non-pathogenic organism, known for its peculiar ringlike and horseshoe-shaped cell morphology. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is only the th...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.741334
更新日期:2010-03-30 00:00:00
abstract::Strain T5(T) is the type strain of the species Phaeobacter inhibens Martens et al. 2006, a secondary metabolite producing bacterium affiliated to the Roseobacter clade. Strain T5(T) was isolated from a water sample taken at the German Wadden Sea, southern North Sea. Here we describe the complete genome sequence and an...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.4448212
更新日期:2013-12-15 00:00:00
abstract::The family Hyphomonadaceae within the Alphaproteobacteria is largely comprised of bacteria isolated from marine environments with striking morphologies and an unusual mode of cell growth. Here, we report the complete genome sequence Hirschia baltica, which is only the second a member of the Hyphomonadaceae with a publ...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.2205004
更新日期:2011-12-31 00:00:00
abstract::Strain CCMM B554, also known as FSM-MA, is a soil dwelling and nodule forming, nitrogen-fixing bacterium isolated from the nodules of the legume Medicago arborea L. in the Maamora Forest, Morocco. The strain forms effective nitrogen fixing nodules on species of the Medicago, Melilotus and Trigonella genera and is exce...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0298-3
更新日期:2017-12-13 00:00:00
abstract::Streptomyces hyaluromycini MB-PO13T (=NBRC 110483T = DSM 100105T) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of the genome sequence. The 11...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0286-7
更新日期:2018-01-11 00:00:00
abstract::Pseudomonas lutea OK2(T) (=LMG 21974(T), CECT 5822(T)) is the type strain of the species and was isolated from the rhizosphere of grass growing in Spain in 2003 based on its phosphate-solubilizing capacity. In order to identify the functional significance of phosphate solubilization in Pseudomonas Plant growth promoti...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-016-0173-7
更新日期:2016-08-23 00:00:00
abstract::Phaeobacter arcticus Zhang et al. 2008 belongs to the marine Roseobacter clade whose members are phylogenetically and physiologically diverse. In contrast to the type species of this genus, Phaeobacter gallaeciensis, which is well characterized, relatively little is known about the characteristics of P. arcticus. Here...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.383362
更新日期:2013-07-30 00:00:00
abstract::Roseovarius mucosus Biebl et al. 2005 is a bacteriochlorophyll a-producing representative of the marine Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, which was isolated from the dinoflagellate Alexandrium ostenfeldii. The marine Roseobacter group was found to be abundant in the ocean and p...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.1186/1944-3277-10-17
更新日期:2015-03-19 00:00:00
abstract::Thermosediminibacter oceani (Lee et al. 2006) is the type species of the genus Thermosediminibacter in the family Thermoanaerobacteraceae. The anaerobic, barophilic, chemoorganotrophic thermophile is characterized by straight to curved Gram-negative rods. The strain described in this study was isolated from a core sam...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.1133078
更新日期:2010-09-28 00:00:00
abstract::Mycoplasma testudineum is one of the pathogens that can cause upper respiratory tract disease in desert tortoises, Gopherus agassizii. We sequenced the genome of M. testudineum BH29T (ATCC 700618T = MCCM 03231T), isolated from the upper respiratory tract of a Mojave desert tortoise with upper respiratory tract disease...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-018-0309-z
更新日期:2018-04-11 00:00:00
abstract::Sphingomonas paucimobilis strain LCT-SP1 is a glucose-nonfermenting Gram-negative, chemoheterotrophic, strictly aerobic bacterium. The major feature of strain LCT-SP1, isolated from the Chinese spacecraft Shenzhou X, together with the genome draft and annotation are described in this paper. The total size of strain LC...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-016-0136-z
更新日期:2016-02-24 00:00:00