Complete genome sequence of Pseudomonas alcaliphila JAB1 (=DSM 26533), a versatile degrader of organic pollutants.

abstract：:Mycoplasma testudineum is one of the pathogens that can cause upper respiratory tract disease in desert tortoises, Gopherus agassizii. We sequenced the genome of M. testudineum BH29T (ATCC 700618T = MCCM 03231T), isolated from the upper respiratory tract of a Mojave desert tortoise with upper respiratory tract disease...

journal_title：Standards in genomic sciences

authors： Weitzman CL,Tillett RL,Sandmeier FC,Tracy CR,Alvarez-Ponce D

更新日期：2018-04-11 00:00:00

abstract：:The tenacious association between strains of the heterotrophic alphaproteobacterial genus Acidiphilium and chemolithotrophic iron oxidizing bacteria has long been known. In this context the genome of the heterotroph Acidiphilium sp. JA12-A1, an isolate from an iron oxidizing mixed culture derived from a pilot plant fo...

journal_title：Standards in genomic sciences

authors： Ullrich SR,Poehlein A,Voget S,Hoppert M,Daniel R,Leimbach A,Tischler JS,Schlömann M,Mühling M

更新日期：2015-08-19 00:00:00

abstract：:Strain CCMM B554, also known as FSM-MA, is a soil dwelling and nodule forming, nitrogen-fixing bacterium isolated from the nodules of the legume Medicago arborea L. in the Maamora Forest, Morocco. The strain forms effective nitrogen fixing nodules on species of the Medicago, Melilotus and Trigonella genera and is exce...

journal_title：Standards in genomic sciences

authors： Nagymihály M,Vásarhelyi BM,Barrière Q,Chong TM,Bálint B,Bihari P,Hong KW,Horváth B,Ibijbijen J,Amar M,Farkas A,Kondorosi É,Chan KG,Gruber V,Ratet P,Mergaert P,Kereszt A

更新日期：2017-12-13 00:00:00

abstract：:Thiobacillus thioparus DSM 505T is one of first two isolated strains of inorganic sulfur-oxidising Bacteria. The original strain of T. thioparus was lost almost 100 years ago and the working type strain is Culture CT (=DSM 505T = ATCC 8158T) isolated by Starkey in 1934 from agricultural soil at Rutgers University, New...

journal_title：Standards in genomic sciences

authors： Hutt LP,Huntemann M,Clum A,Pillay M,Palaniappan K,Varghese N,Mikhailova N,Stamatis D,Reddy T,Daum C,Shapiro N,Ivanova N,Kyrpides N,Woyke T,Boden R

更新日期：2017-01-19 00:00:00

abstract：:Streptobacillus moniliformis Levaditi et al. 1925 is the type and sole species of the genus Streptobacillus, and is of phylogenetic interest because of its isolated location in the sparsely populated and neither taxonomically nor genomically much accessed family 'Leptotrichiaceae' within the phylum Fusobacteria. The '...

journal_title：Standards in genomic sciences

authors： Nolan M,Gronow S,Lapidus A,Ivanova N,Copeland A,Lucas S,Del Rio TG,Chen F,Tice H,Pitluck S,Cheng JF,Sims D,Meincke L,Bruce D,Goodwin L,Brettin T,Han C,Detter JC,Ovchinikova G,Pati A,Mavromatis K,Mikhailova N,C

更新日期：2009-12-30 00:00:00

abstract：:Litoreibacter arenae Kim et al. 2012 is a member of the genomically well-characterized Rhodobacteraceae clade within the Roseobacter clade. Representatives of this clade are known to be metabolically versatile and involved in marine carbon-producing and biogeochemical processes. They form a physiologically heterogeneo...

journal_title：Standards in genomic sciences

authors： Riedel T,Fiebig A,Petersen J,Gronow S,Kyrpides NC,Göker M,Klenk HP

更新日期：2013-10-01 00:00:00

abstract：:Although the hemipterans (Aphididae) are comprised of roughly 50,000 extant insect species, only four have sequenced genomes that are publically available, namely Acyrthosiphon pisum (pea aphid), Rhodnius prolixus (Kissing bug), Myzus persicae (Green peach aphid) and Diuraphis noxia (Russian wheat aphid). As a signifi...

journal_title：Standards in genomic sciences

authors： Burger NFV,Botha AM

更新日期：2017-12-28 00:00:00

abstract：:The genus Porphyrobacter belongs to aerobic anoxygenic phototrophic bacteria cluster. Porphyrobacter neustonensis DSM 9434 was isolated from a eutrophic freshwater pond in Australia, and is able to synthesize Bacteriochlorophyll a as well as grow under aerobic conditions. It is the type species of the genus Porphyroba...

journal_title：Standards in genomic sciences

authors： Liu Q,Wu YH,Cheng H,Xu L,Wang CS,Xu XW

更新日期：2017-05-10 00:00:00

abstract：:Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because...

journal_title：Standards in genomic sciences

authors： Anderson IJ,DasSarma P,Lucas S,Copeland A,Lapidus A,Del Rio TG,Tice H,Dalin E,Bruce DC,Goodwin L,Pitluck S,Sims D,Brettin TS,Detter JC,Han CS,Larimer F,Hauser L,Land M,Ivanova N,Richardson P,Cavicchioli R,DasSar

更新日期：2016-09-10 00:00:00

abstract：:Thermosediminibacter oceani (Lee et al. 2006) is the type species of the genus Thermosediminibacter in the family Thermoanaerobacteraceae. The anaerobic, barophilic, chemoorganotrophic thermophile is characterized by straight to curved Gram-negative rods. The strain described in this study was isolated from a core sam...

journal_title：Standards in genomic sciences

authors： Pitluck S,Yasawong M,Munk C,Nolan M,Lapidus A,Lucas S,Glavina Del Rio T,Tice H,Cheng JF,Bruce D,Detter C,Tapia R,Han C,Goodwin L,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Land M,

更新日期：2010-09-28 00:00:00

abstract：:Pedobacter steynii DX4 was isolated from the soil of Tibetan Plateau and it can use crude oil as sole carbon and energy source at 15 °C. The genome of Pedobacter steynii DX4 has been sequenced and served as basis for analysis its metabolic mechanism. It is the first genome of crude oil degrading strain in Pedobacter g...

journal_title：Standards in genomic sciences

authors： Chang S,Zhang G,Chen X,Long H,Wang Y,Chen T,Liu G

更新日期：2017-07-27 00:00:00

abstract：:A lytic bacteriophage RG-2014 infecting a biofilm forming multidrug resistant bacterium Delftia tsuruhatensis strain ARB-1 as its host was isolated from a full-scale municipal wastewater treatment plant. Lytic phage RG-2014 was isolated for developing phage based therapeutic approaches against Delftia tsuruhatensis st...

journal_title：Standards in genomic sciences

authors： Bhattacharjee AS,Motlagh AM,Gilcrease EB,Islam MI,Casjens SR,Goel R

更新日期：2017-12-18 00:00:00

abstract：:We report the genome of a Staphylococcus aureus strain (ILRI_Eymole1/1) isolated from a nasal swab of a dromedary camel (Camelus dromedarius) in North Kenya. The complete genome sequence of this strain consists of a circular chromosome of 2,874,302 bp with a GC-content of 32.88 %. In silico annotation predicted 2755 p...

journal_title：Standards in genomic sciences

authors： Zubair S,Fischer A,Liljander A,Meens J,Hegerman J,Gourlé H,Bishop RP,Roebbelen I,Younan M,Mustafa MI,Mushtaq M,Bongcam-Rudloff E,Jores J

更新日期：2015-11-20 00:00:00

abstract：:This report summarizes the proceedings of the second workshop of the 'Minimum Information for Biological and Biomedical Investigations' (MIBBI) consortium held on Dec 1-2, 2010 in Rüdesheim, Germany through the sponsorship of the Beilstein-Institute. MIBBI is an umbrella organization uniting communities developing Min...

journal_title：Standards in genomic sciences

authors： Kettner C,Field D,Sansone SA,Taylor C,Aerts J,Binns N,Blake A,Britten CM,de Marco A,Fostel J,Gaudet P,González-Beltrán A,Hardy N,Hellemans J,Hermjakob H,Juty N,Leebens-Mack J,Maguire E,Neumann S,Orchard S,Parkinso

更新日期：2010-12-25 00:00:00

abstract：:Sphingomonas paucimobilis strain LCT-SP1 is a glucose-nonfermenting Gram-negative, chemoheterotrophic, strictly aerobic bacterium. The major feature of strain LCT-SP1, isolated from the Chinese spacecraft Shenzhou X, together with the genome draft and annotation are described in this paper. The total size of strain LC...

journal_title：Standards in genomic sciences

authors： Pan L,Zhou H,Li J,Huang B,Guo J,Zhang XL,Gao LC,Xu C,Liu CT

更新日期：2016-02-24 00:00:00

abstract：:The nonheterocystous filamentous cyanobacterium, strain ESFC-1, is a recently described member of the order Oscillatoriales within the Cyanobacteria. ESFC-1 has been shown to be a major diazotroph in the intertidal microbial mat system at Elkhorn Slough, CA, USA. Based on phylogenetic analyses of the 16S RNA gene, ESF...

journal_title：Standards in genomic sciences

authors： Everroad RC,Stuart RK,Bebout BM,Detweiler AM,Lee JZ,Woebken D,Prufert-Bebout L,Pett-Ridge J

更新日期：2016-08-24 00:00:00

abstract：:Chryseobacterium bovis DSM 19482T (Hantsis-Zacharov et al., Int J Syst Evol Microbiol 58:1024-1028, 2008) is a Gram-negative, rod shaped, non-motile, facultative anaerobe, chemoorganotroph bacterium. C. bovis is a member of the Flavobacteriaceae, a family within the phylum Bacteroidetes. It was isolated when psychroto...

journal_title：Standards in genomic sciences

authors： Laviad-Shitrit S,Göker M,Huntemann M,Clum A,Pillay M,Palaniappan K,Varghese N,Mikhailova N,Stamatis D,Reddy TBK,Daum C,Shapiro N,Markowitz V,Ivanova N,Woyke T,Klenk HP,Kyrpides NC,Halpern M

更新日期：2017-05-08 00:00:00

abstract：:The bacterium Vibrio ordalii is best known as the causative agent of vibriosis outbreaks in fish and thus recognized for generating serious production losses in aquaculture systems. Here we report for the first time on the isolation and the genome sequencing of phage vB_VorS-PVo5, infectious to Vibrio ordalii ATCC 335...

journal_title：Standards in genomic sciences

authors： Echeverría-Vega A,Morales-Vicencio P,Saez-Saavedra C,Ceh J,Araya R

更新日期：2016-07-04 00:00:00

abstract：:Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft genome sequence and ann...

journal_title：Standards in genomic sciences

authors： Ntougias S,Lapidus A,Copeland A,Reddy TB,Pati A,Ivanova NN,Markowitz VM,Klenk HP,Woyke T,Fasseas C,Kyrpides NC,Zervakis GI

更新日期：2015-08-13 00:00:00

abstract：:Leptonema illini Hovind-Hougen 1979 is the type species of the genus Leptonema, family Leptospiraceae, phylum Spirochaetes. Organisms of this family have a Gram-negative-like cell envelope consisting of a cytoplasmic membrane and an outer membrane. The peptidoglycan layer is associated with the cytoplasmic rather than...

journal_title：Standards in genomic sciences

authors： Huntemann M,Stackebrandt E,Held B,Nolan M,Lucas S,Hammon N,Deshpande S,Cheng JF,Tapia R,Goodwin LA,Pitluck S,Liolios K,Pagani I,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Land M,Rohde M,Gron

更新日期：2013-05-25 00:00:00

abstract：:Streptomyces hyaluromycini MB-PO13T (=NBRC 110483T = DSM 100105T) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of the genome sequence. The 11...

journal_title：Standards in genomic sciences

authors： Harunari E,Komaki H,Ichikawa N,Hosoyama A,Kimura A,Hamada M,Igarashi Y

更新日期：2018-01-11 00:00:00

abstract：:Polynucleobacter necessarius subsp. asymbioticus strain QLW-P1DMWA-1(T) is a planktonic freshwater bacterium affiliated with the family Burkholderiaceae (class Betaproteobacteria). This strain is of interest because it represents a subspecies with cosmopolitan and ubiquitous distribution in standing freshwater systems...

journal_title：Standards in genomic sciences

authors： Meincke L,Copeland A,Lapidus A,Lucas S,Berry KW,Del Rio TG,Hammon N,Dalin E,Tice H,Pitluck S,Richardson P,Bruce D,Goodwin L,Han C,Tapia R,Detter JC,Schmutz J,Brettin T,Larimer F,Land M,Hauser L,Kyrpides NC,Iva

更新日期：2012-03-19 00:00:00

abstract：:The family Hyphomonadaceae within the Alphaproteobacteria is largely comprised of bacteria isolated from marine environments with striking morphologies and an unusual mode of cell growth. Here, we report the complete genome sequence Hirschia baltica, which is only the second a member of the Hyphomonadaceae with a publ...

journal_title：Standards in genomic sciences

authors： Chertkov O,Brown PJ,Kysela DT,de Pedro MA,Lucas S,Copeland A,Lapidus A,Del Rio TG,Tice H,Bruce D,Goodwin L,Pitluck S,Detter JC,Han C,Larimer F,Chang YJ,Jeffries CD,Land M,Hauser L,Kyrpides NC,Ivanova N,Ovchinnik

更新日期：2011-12-31 00:00:00

abstract：:Thioalkalivibrio thiocyanoxidans strain ARh 2(T) is a sulfur-oxidizing bacterium isolated from haloalkaline soda lakes. It is a motile, Gram-negative member of the Gammaproteobacteria. Remarkable properties include the ability to grow on thiocyanate as the sole energy, sulfur and nitrogen source, and the capability of...

journal_title：Standards in genomic sciences

authors： Berben T,Sorokin DY,Ivanova N,Pati A,Kyrpides N,Goodwin LA,Woyke T,Muyzer G

更新日期：2015-10-26 00:00:00

abstract：:Mesotoga strain PhosAc3 was the first mesophilic cultivated member of the order Thermotogales. This genus currently contain two described species, M. prima and M. infera. Strain PhosAc3, isolated from a Tunisian digestor treating phosphogypsum, is phylogenetically closely related to M. prima strain MesG1.Ag.4.2(T). St...

journal_title：Standards in genomic sciences

authors： Ben Hania W,Fadhlaoui K,Brochier-Armanet C,Persillon C,Postec A,Hamdi M,Dolla A,Ollivier B,Fardeau ML,Le Mer J,Erauso G

更新日期：2015-05-01 00:00:00

abstract：:Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. H. utahensis is a free-living, motile, rod shaped to pleomorphic, Gram-negative archaeon, wh...

journal_title：Standards in genomic sciences

authors： Anderson I,Tindall BJ,Pomrenke H,Göker M,Lapidus A,Nolan M,Copeland A,Glavina Del Rio T,Chen F,Tice H,Cheng JF,Lucas S,Chertkov O,Bruce D,Brettin T,Detter JC,Han C,Goodwin L,Land M,Hauser L,Chang YJ,Jeffries CD

更新日期：2009-11-22 00:00:00

abstract：:Brachymonas chironomi strain AIMA4(T) (Halpern et al., 2009) is a Gram-negative, non-motile, aerobic, chemoorganotroph bacterium. B. chironomi is a member of the Comamonadaceae, a family within the class Betaproteobacteria. This species was isolated from a chironomid (Diptera; Chironomidae) egg mass, sampled from a wa...

journal_title：Standards in genomic sciences

authors： Laviad S,Lapidus A,Han J,Haynes M,Reddy T,Huntemann M,Pati A,Ivanova NN,Mavromatis K,Lang E,Rohde M,Markowitz V,Woyke T,Klenk HP,Kyrpides NC,Halpern M

更新日期：2015-05-27 00:00:00

abstract：:Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the specie...

journal_title：Standards in genomic sciences

authors： Pati A,Sikorski J,Nolan M,Lapidus A,Copeland A,Glavina Del Rio T,Lucas S,Chen F,Tice H,Pitluck S,Cheng JF,Chertkov O,Brettin T,Han C,Detter JC,Kuske C,Bruce D,Goodwin L,Chain P,D'haeseleer P,Chen A,Palaniappan K

更新日期：2009-09-24 00:00:00

abstract：:Methanoculleus bourgensis strain MAB1 has been identified as the hydrogenotrophic partner of mesophilic acetate-oxidising bacteria, a syntrophic relationship operating close to the thermodynamic equilibrium and of considerable importance in ammonia-rich engineered biogas processes. Methanoculleus bourgensis strain MAB...

journal_title：Standards in genomic sciences

authors： Manzoor S,Schnürer A,Bongcam-Rudloff E,Müller B

更新日期：2016-10-12 00:00:00

abstract：:Halomonas zhanjiangensis Chen et al. 2009 is a member of the genus Halomonas, family Halomonadaceae, class Gammaproteobacteria. Representatives of the genus Halomonas are a group of halophilic bacteria often isolated from salty environments. The type strain H. zhanjiangensis JSM 078169(T) was isolated from a sea urchi...

journal_title：Standards in genomic sciences

authors： Zhou Y,Li R,Gao XY,Lapidus A,Han J,Haynes M,Lobos E,Huntemann M,Pati A,Ivanova NN,Rohde M,Mavromatis K,Tindall BJ,Markowitz V,Woyke T,Klenk HP,Kyrpides NC,Li WJ

更新日期：2014-04-11 00:00:00