High quality draft genome sequence of Mycoplasma testudineum strain BH29T, isolated from the respiratory tract of a desert tortoise.

abstract：:Streptobacillus moniliformis Levaditi et al. 1925 is the type and sole species of the genus Streptobacillus, and is of phylogenetic interest because of its isolated location in the sparsely populated and neither taxonomically nor genomically much accessed family 'Leptotrichiaceae' within the phylum Fusobacteria. The '...

journal_title：Standards in genomic sciences

authors： Nolan M,Gronow S,Lapidus A,Ivanova N,Copeland A,Lucas S,Del Rio TG,Chen F,Tice H,Pitluck S,Cheng JF,Sims D,Meincke L,Bruce D,Goodwin L,Brettin T,Han C,Detter JC,Ovchinikova G,Pati A,Mavromatis K,Mikhailova N,C

更新日期：2009-12-30 00:00:00

abstract：:Pedobacter steynii DX4 was isolated from the soil of Tibetan Plateau and it can use crude oil as sole carbon and energy source at 15 °C. The genome of Pedobacter steynii DX4 has been sequenced and served as basis for analysis its metabolic mechanism. It is the first genome of crude oil degrading strain in Pedobacter g...

journal_title：Standards in genomic sciences

authors： Chang S,Zhang G,Chen X,Long H,Wang Y,Chen T,Liu G

更新日期：2017-07-27 00:00:00

abstract：:Streptomyces hyaluromycini MB-PO13T (=NBRC 110483T = DSM 100105T) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of the genome sequence. The 11...

journal_title：Standards in genomic sciences

authors： Harunari E,Komaki H,Ichikawa N,Hosoyama A,Kimura A,Hamada M,Igarashi Y

更新日期：2018-01-11 00:00:00

abstract：:Cronobacter sakazakii is a Gram-negative opportunistic pathogen that causes life- threatening infantile infections, such as meningitis, septicemia, and necrotizing enterocolitis, as well as pneumonia, septicemia, and urinary tract and wound infections in adults. Here, we report 26 draft genome sequences of C. sakazaki...

journal_title：Standards in genomic sciences

authors： Jang H,Woo J,Lee Y,Negrete F,Finkelstein S,Chase HR,Addy N,Ewing L,Beaubrun JJG,Patel I,Gangiredla J,Eshwar A,Jaradat ZW,Seo K,Shabarinath S,Fanning S,Stephan R,Lehner A,Tall BD,Gopinath GR

更新日期：2018-11-29 00:00:00

abstract：:A plant-associated member of the family Enterobacteriaceae, Serratia plymuthica strain AS12 was isolated from rapeseed roots. It is of scientific interest because it promotes plant growth and inhibits plant pathogens. The genome of S. plymuthica AS12 comprises a 5,443,009 bp long circular chromosome, which consists of...

journal_title：Standards in genomic sciences

authors： Neupane S,Finlay RD,Alström S,Goodwin L,Kyrpides NC,Lucas S,Lapidus A,Bruce D,Pitluck S,Peters L,Ovchinnikova G,Chertkov O,Han J,Han C,Tapia R,Detter JC,Land M,Hauser L,Cheng JF,Ivanova N,Pagani I,Klenk HP,Woy

更新日期：2012-05-25 00:00:00

abstract：:Methylibium sp. strain T29 was isolated from a gasoline-contaminated aquifer and proved to have excellent capabilities in degrading some common fuel oxygenates like methyl tert-butyl ether, tert-amyl methyl ether and tert-butyl alcohol along with other organic compounds. Here, we report the draft genome sequence of M....

journal_title：Standards in genomic sciences

authors： Szabó Z,Gyula P,Robotka H,Bató E,Gálik B,Pach P,Pekker P,Papp I,Bihari Z

更新日期：2015-07-19 00:00:00

abstract：:Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing ability of this strain,...

journal_title：Standards in genomic sciences

authors： Zeytun A,Sikorski J,Nolan M,Lapidus A,Lucas S,Han J,Tice H,Cheng JF,Tapia R,Goodwin L,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Ovchinnikova G,Pati A,Chen A,Palaniappan K,Ngatchou-Djao OD,Land M,Ha

更新日期：2011-04-29 00:00:00

abstract：:Dyadobacter tibetensis Y620-1 is the type strain of the species Dyadobacter tibetensis, isolated from ice at a depth of 59 m from a high altitude glacier in China (5670 m above sea level). It is psychrotolerant with growth temperature ranges of 4 to 35°C. Here we describe the features of this organism, together with t...

journal_title：Standards in genomic sciences

authors： Liu Y,Hu A,Shen L,Yao T,Jiao N,Wang N,Xu B

更新日期：2014-03-15 00:00:00

abstract：:Phage ST0 lysing Escherichia coli H8 was isolated from wastewater and sequenced using an Illumina HiSeq system. Genomic analyses revealed that it was virulent phages and contained a circular double-stranded DNA genome, consisting of 170,496 nucleotides with an average G + C content of 37.67%. This study may provide po...

journal_title：Standards in genomic sciences

authors： Liu H,Liu X,Li J

更新日期：2017-12-19 00:00:00

abstract：:The bacterium Vibrio ordalii is best known as the causative agent of vibriosis outbreaks in fish and thus recognized for generating serious production losses in aquaculture systems. Here we report for the first time on the isolation and the genome sequencing of phage vB_VorS-PVo5, infectious to Vibrio ordalii ATCC 335...

journal_title：Standards in genomic sciences

authors： Echeverría-Vega A,Morales-Vicencio P,Saez-Saavedra C,Ceh J,Araya R

更新日期：2016-07-04 00:00:00

abstract：:Bacteroides coprosuis Whitehead et al. 2005 belongs to the genus Bacteroides, which is a member of the family Bacteroidaceae. Members of the genus Bacteroides in general are known as beneficial protectors of animal guts against pathogenic microorganisms, and as contributors to the degradation of complex molecules such...

journal_title：Standards in genomic sciences

authors： Land M,Held B,Gronow S,Abt B,Lucas S,Del Rio TG,Nolan M,Tice H,Cheng JF,Pitluck S,Liolios K,Pagani I,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Tapia R,Han C,Goodwin L,Chen A,Palaniappan K,Hauser L,Brambilla E

更新日期：2011-04-29 00:00:00

abstract：:Ferroglobus placidus belongs to the order Archaeoglobales within the archaeal phylum Euryarchaeota. Strain AEDII12DO is the type strain of the species and was isolated from a shallow marine hydrothermal system at Vulcano, Italy. It is a hyperthermophilic, anaerobic chemolithoautotroph, but it can also use a variety of...

journal_title：Standards in genomic sciences

authors： Anderson I,Risso C,Holmes D,Lucas S,Copeland A,Lapidus A,Cheng JF,Bruce D,Goodwin L,Pitluck S,Saunders E,Brettin T,Detter JC,Han C,Tapia R,Larimer F,Land M,Hauser L,Woyke T,Lovley D,Kyrpides N,Ivanova N

更新日期：2011-10-15 00:00:00

abstract：:Escherichia coli is the most abundant facultative anaerobic bacteria in the gastro-intestinal tract of mammals but can be responsible for intestinal infection due to acquisition of virulence factors. Genomes of pathogenic E. coli strains are widely described whereas those of bovine commensal E. coli strains are very s...

journal_title：Standards in genomic sciences

authors： Segura A,Auffret P,Klopp C,Bertin Y,Forano E

更新日期：2017-10-10 00:00:00

abstract：:Sphingomonas paucimobilis strain LCT-SP1 is a glucose-nonfermenting Gram-negative, chemoheterotrophic, strictly aerobic bacterium. The major feature of strain LCT-SP1, isolated from the Chinese spacecraft Shenzhou X, together with the genome draft and annotation are described in this paper. The total size of strain LC...

journal_title：Standards in genomic sciences

authors： Pan L,Zhou H,Li J,Huang B,Guo J,Zhang XL,Gao LC,Xu C,Liu CT

更新日期：2016-02-24 00:00:00

abstract：:Meiothermus silvanus (Tenreiro et al. 1995) Nobre et al. 1996 belongs to a thermophilic genus whose members share relatively low degrees of 16S rRNA gene sequence similarity. Meiothermus constitutes an evolutionary lineage separate from members of the genus Thermus, from which they can generally be distinguished by th...

journal_title：Standards in genomic sciences

authors： Sikorski J,Tindall BJ,Lowry S,Lucas S,Nolan M,Copeland A,Glavina Del Rio T,Tice H,Cheng JF,Han C,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Goodwin L,Chen A,Palaniappan K,Land M,Hauser L,Chan

更新日期：2010-07-29 00:00:00

abstract：:We report the genome of a Staphylococcus aureus strain (ILRI_Eymole1/1) isolated from a nasal swab of a dromedary camel (Camelus dromedarius) in North Kenya. The complete genome sequence of this strain consists of a circular chromosome of 2,874,302 bp with a GC-content of 32.88 %. In silico annotation predicted 2755 p...

journal_title：Standards in genomic sciences

authors： Zubair S,Fischer A,Liljander A,Meens J,Hegerman J,Gourlé H,Bishop RP,Roebbelen I,Younan M,Mustafa MI,Mushtaq M,Bongcam-Rudloff E,Jores J

更新日期：2015-11-20 00:00:00

abstract：:Enorma massiliensis strain phI(T) is the type strain of E. massiliensis gen. nov., sp. nov., the type species of a new genus within the family Coriobacteriaceae, Enorma gen. nov. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. E. mass...

journal_title：Standards in genomic sciences

authors： Mishra AK,Hugon P,Lagier JC,Nguyen TT,Couderc C,Raoult D,Fournier PE

更新日期：2013-06-06 00:00:00

abstract：:Staphylococcus cohnii subsp. cohnii belongs to the family Staphylococcaceae in the order Bacillales, class Bacilli and phylum Firmicutes. The increasing relevance of S. cohnii to human health prompted us to determine the genomic sequence of Staphylococcus cohnii subsp. cohnii strain hu-01, a multidrug-resistant isolat...

journal_title：Standards in genomic sciences

authors： Hu X,Li A,Lv L,Yuan C,Guo L,Jiang X,Jiang H,Qian G,Zheng B,Guo J,Li L

更新日期：2014-03-15 00:00:00

abstract：:This report summarizes the proceedings of the second workshop of the 'Minimum Information for Biological and Biomedical Investigations' (MIBBI) consortium held on Dec 1-2, 2010 in Rüdesheim, Germany through the sponsorship of the Beilstein-Institute. MIBBI is an umbrella organization uniting communities developing Min...

journal_title：Standards in genomic sciences

authors： Kettner C,Field D,Sansone SA,Taylor C,Aerts J,Binns N,Blake A,Britten CM,de Marco A,Fostel J,Gaudet P,González-Beltrán A,Hardy N,Hellemans J,Hermjakob H,Juty N,Leebens-Mack J,Maguire E,Neumann S,Orchard S,Parkinso

更新日期：2010-12-25 00:00:00

abstract：:In this study, following its isolation from contaminated soil, the genomic sequence of Pseudomonas alcaliphila strain JAB1 (=DSM 26533), a biphenyl-degrading bacterium, is reported and analyzed in relation to its extensive degradative capabilities. The P. alcaliphila JAB1 genome (GenBank accession no. CP016162) consis...

journal_title：Standards in genomic sciences

authors： Ridl J,Suman J,Fraraccio S,Hradilova M,Strejcek M,Cajthaml T,Zubrova A,Macek T,Strnad H,Uhlik O

更新日期：2018-02-01 00:00:00

abstract：:Nereida ignava strain 2SM4(T) (= CECT 5292(T) = DSM 16309(T) = CIP 108404(T) = CCUG 49433(T)) is a marine bacterium belonging to the Roseobacter group of the family Rhodobacteraceae within the class Alphaproteobacteria. The strain was isolated from sea water surrounding cultivated oysters 2-3 miles off the Mediterrane...

journal_title：Standards in genomic sciences

authors： Arahal DR,Pujalte MJ,Rodrigo-Torres L

更新日期：2016-02-29 00:00:00

abstract：:Natrinema altunense strain AJ2T, a halophilic archaeal strain, was isolated from a high-altitude (3884 m) salt lake in Xinjiang, China. This strain requires at least 1.7 M NaCl to grow and can grow anaerobically in the presence of nitrate. To understand the genetics underlying its extreme phenotype, we de novo assembl...

journal_title：Standards in genomic sciences

authors： Cheng H,Huo YY,Hu J,Xu XW,Wu M

更新日期：2017-03-01 00:00:00

abstract：:Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the specie...

journal_title：Standards in genomic sciences

authors： Pati A,Sikorski J,Nolan M,Lapidus A,Copeland A,Glavina Del Rio T,Lucas S,Chen F,Tice H,Pitluck S,Cheng JF,Chertkov O,Brettin T,Han C,Detter JC,Kuske C,Bruce D,Goodwin L,Chain P,D'haeseleer P,Chen A,Palaniappan K

更新日期：2009-09-24 00:00:00

abstract：:Syntrophobacter fumaroxidans strain MPOB(T) is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H2 and CO2 during the overall degradation of organic matter, and its release of pro...

journal_title：Standards in genomic sciences

authors： Plugge CM,Henstra AM,Worm P,Swarts DC,Paulitsch-Fuchs AH,Scholten JC,Lykidis A,Lapidus AL,Goltsman E,Kim E,McDonald E,Rohlin L,Crable BR,Gunsalus RP,Stams AJ,McInerney MJ

更新日期：2012-10-10 00:00:00

abstract：:Phaeobacter arcticus Zhang et al. 2008 belongs to the marine Roseobacter clade whose members are phylogenetically and physiologically diverse. In contrast to the type species of this genus, Phaeobacter gallaeciensis, which is well characterized, relatively little is known about the characteristics of P. arcticus. Here...

journal_title：Standards in genomic sciences

authors： Freese HM,Dalingault H,Petersen J,Pradella S,Davenport K,Teshima H,Chen A,Pati A,Ivanova N,Goodwin LA,Chain P,Detter JC,Rohde M,Gronow S,Kyrpides NC,Woyke T,Brinkhoff T,Göker M,Overmann J,Klenk HP

更新日期：2013-07-30 00:00:00

abstract：:Litoreibacter arenae Kim et al. 2012 is a member of the genomically well-characterized Rhodobacteraceae clade within the Roseobacter clade. Representatives of this clade are known to be metabolically versatile and involved in marine carbon-producing and biogeochemical processes. They form a physiologically heterogeneo...

journal_title：Standards in genomic sciences

authors： Riedel T,Fiebig A,Petersen J,Gronow S,Kyrpides NC,Göker M,Klenk HP

更新日期：2013-10-01 00:00:00

abstract：:Mesorhizobium loti strain NZP2037 was isolated in 1961 in Palmerston North, New Zealand from a Lotus divaricatus root nodule. Compared to most other M. loti strains, it has a broad host range and is one of very few M. loti strains able to form effective nodules on the agriculturally important legume Lotus pedunculatus...

journal_title：Standards in genomic sciences

authors： Kelly S,Sullivan J,Ronson C,Tian R,Bräu L,Davenport K,Daligault H,Erkkila T,Goodwin L,Gu W,Munk C,Teshima H,Xu Y,Chain P,Woyke T,Liolios K,Pati A,Mavromatis K,Markowitz V,Ivanova N,Kyrpides N,Reeve W

更新日期：2014-12-08 00:00:00

abstract：:Polynucleobacter necessarius subsp. asymbioticus strain QLW-P1DMWA-1(T) is a planktonic freshwater bacterium affiliated with the family Burkholderiaceae (class Betaproteobacteria). This strain is of interest because it represents a subspecies with cosmopolitan and ubiquitous distribution in standing freshwater systems...

journal_title：Standards in genomic sciences

authors： Meincke L,Copeland A,Lapidus A,Lucas S,Berry KW,Del Rio TG,Hammon N,Dalin E,Tice H,Pitluck S,Richardson P,Bruce D,Goodwin L,Han C,Tapia R,Detter JC,Schmutz J,Brettin T,Larimer F,Land M,Hauser L,Kyrpides NC,Iva

更新日期：2012-03-19 00:00:00

abstract：:Spirosoma linguale Migula 1894 is the type species of the genus. S. linguale is a free-living and non-pathogenic organism, known for its peculiar ringlike and horseshoe-shaped cell morphology. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is only the th...

journal_title：Standards in genomic sciences

authors： Lail K,Sikorski J,Saunders E,Lapidus A,Glavina Del Rio T,Copeland A,Tice H,Cheng JF,Lucas S,Nolan M,Bruce D,Goodwin L,Pitluck S,Ivanova N,Mavromatis K,Ovchinnikova G,Pati A,Chen A,Palaniappan K,Land M,Hauser L,C

更新日期：2010-03-30 00:00:00

abstract：:Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because...

journal_title：Standards in genomic sciences

authors： Anderson IJ,DasSarma P,Lucas S,Copeland A,Lapidus A,Del Rio TG,Tice H,Dalin E,Bruce DC,Goodwin L,Pitluck S,Sims D,Brettin TS,Detter JC,Han CS,Larimer F,Hauser L,Land M,Ivanova N,Richardson P,Cavicchioli R,DasSar

更新日期：2016-09-10 00:00:00