High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169(T) (DSM 21076(T)) from a sea urchin in southern China.

abstract：:Brachymonas chironomi strain AIMA4(T) (Halpern et al., 2009) is a Gram-negative, non-motile, aerobic, chemoorganotroph bacterium. B. chironomi is a member of the Comamonadaceae, a family within the class Betaproteobacteria. This species was isolated from a chironomid (Diptera; Chironomidae) egg mass, sampled from a wa...

journal_title：Standards in genomic sciences

authors： Laviad S,Lapidus A,Han J,Haynes M,Reddy T,Huntemann M,Pati A,Ivanova NN,Mavromatis K,Lang E,Rohde M,Markowitz V,Woyke T,Klenk HP,Kyrpides NC,Halpern M

更新日期：2015-05-27 00:00:00

abstract：:This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elemental sulfur to H2S...

journal_title：Standards in genomic sciences

authors： Susanti D,Johnson EF,Lapidus A,Han J,Reddy TB,Pilay M,Ivanova NN,Markowitz VM,Woyke T,Kyrpides NC,Mukhopadhyay B

更新日期：2016-01-13 00:00:00

abstract：:Root nodule bacteria are free-living soil bacteria, belonging to diverse genera within the Alphaproteobacteria and Betaproteobacteria, that have the capacity to form nitrogen-fixing symbioses with legumes. The symbiosis is specific and is governed by signaling molecules produced from both host and bacteria. Sequencing...

journal_title：Standards in genomic sciences

authors： Reeve W,Ardley J,Tian R,Eshragi L,Yoon JW,Ngamwisetkun P,Seshadri R,Ivanova NN,Kyrpides NC

更新日期：2015-02-09 00:00:00

abstract：:Phaeobacter arcticus Zhang et al. 2008 belongs to the marine Roseobacter clade whose members are phylogenetically and physiologically diverse. In contrast to the type species of this genus, Phaeobacter gallaeciensis, which is well characterized, relatively little is known about the characteristics of P. arcticus. Here...

journal_title：Standards in genomic sciences

authors： Freese HM,Dalingault H,Petersen J,Pradella S,Davenport K,Teshima H,Chen A,Pati A,Ivanova N,Goodwin LA,Chain P,Detter JC,Rohde M,Gronow S,Kyrpides NC,Woyke T,Brinkhoff T,Göker M,Overmann J,Klenk HP

更新日期：2013-07-30 00:00:00

abstract：:Thioalkalivibrio thiocyanoxidans strain ARh 2(T) is a sulfur-oxidizing bacterium isolated from haloalkaline soda lakes. It is a motile, Gram-negative member of the Gammaproteobacteria. Remarkable properties include the ability to grow on thiocyanate as the sole energy, sulfur and nitrogen source, and the capability of...

journal_title：Standards in genomic sciences

authors： Berben T,Sorokin DY,Ivanova N,Pati A,Kyrpides N,Goodwin LA,Woyke T,Muyzer G

更新日期：2015-10-26 00:00:00

abstract：:Spirosoma linguale Migula 1894 is the type species of the genus. S. linguale is a free-living and non-pathogenic organism, known for its peculiar ringlike and horseshoe-shaped cell morphology. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is only the th...

journal_title：Standards in genomic sciences

authors： Lail K,Sikorski J,Saunders E,Lapidus A,Glavina Del Rio T,Copeland A,Tice H,Cheng JF,Lucas S,Nolan M,Bruce D,Goodwin L,Pitluck S,Ivanova N,Mavromatis K,Ovchinnikova G,Pati A,Chen A,Palaniappan K,Land M,Hauser L,C

更新日期：2010-03-30 00:00:00

abstract：:Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because...

journal_title：Standards in genomic sciences

authors： Anderson IJ,DasSarma P,Lucas S,Copeland A,Lapidus A,Del Rio TG,Tice H,Dalin E,Bruce DC,Goodwin L,Pitluck S,Sims D,Brettin TS,Detter JC,Han CS,Larimer F,Hauser L,Land M,Ivanova N,Richardson P,Cavicchioli R,DasSar

更新日期：2016-09-10 00:00:00

abstract：:Pseudomonas lutea OK2(T) (=LMG 21974(T), CECT 5822(T)) is the type strain of the species and was isolated from the rhizosphere of grass growing in Spain in 2003 based on its phosphate-solubilizing capacity. In order to identify the functional significance of phosphate solubilization in Pseudomonas Plant growth promoti...

journal_title：Standards in genomic sciences

authors： Kwak Y,Park GS,Shin JH

更新日期：2016-08-23 00:00:00

abstract：:Flavihumibacter solisilvae 3-3(T) (= KACC 17917(T) = JCM 19891(T)) represents a type strain of the genus Flavihumibacter within the family Chitinophagaceae. This strain can use various sole carbon sources, making it applicable in industry and bioremediation. In this study, the draft genomic information of F. solisilva...

journal_title：Standards in genomic sciences

authors： Zhou G,Chen C,Jeon CO,Wang G,Li M

更新日期：2015-09-19 00:00:00

abstract：:This report summarizes the proceedings of the second workshop of the 'Minimum Information for Biological and Biomedical Investigations' (MIBBI) consortium held on Dec 1-2, 2010 in Rüdesheim, Germany through the sponsorship of the Beilstein-Institute. MIBBI is an umbrella organization uniting communities developing Min...

journal_title：Standards in genomic sciences

authors： Kettner C,Field D,Sansone SA,Taylor C,Aerts J,Binns N,Blake A,Britten CM,de Marco A,Fostel J,Gaudet P,González-Beltrán A,Hardy N,Hellemans J,Hermjakob H,Juty N,Leebens-Mack J,Maguire E,Neumann S,Orchard S,Parkinso

更新日期：2010-12-25 00:00:00

abstract：:Candidatus Arsenophonus lipopteni (Enterobacteriaceae, Gammaproteobacteria) is an obligate intracellular symbiont of the blood feeding deer ked, Lipoptena cervi (Diptera: Hippoboscidae). The bacteria reside in specialized cells derived from host gut epithelia (bacteriocytes) forming a compact symbiotic organ (bacterio...

journal_title：Standards in genomic sciences

authors： Nováková E,Hypša V,Nguyen P,Husník F,Darby AC

更新日期：2016-09-17 00:00:00

abstract：:Streptobacillus moniliformis Levaditi et al. 1925 is the type and sole species of the genus Streptobacillus, and is of phylogenetic interest because of its isolated location in the sparsely populated and neither taxonomically nor genomically much accessed family 'Leptotrichiaceae' within the phylum Fusobacteria. The '...

journal_title：Standards in genomic sciences

authors： Nolan M,Gronow S,Lapidus A,Ivanova N,Copeland A,Lucas S,Del Rio TG,Chen F,Tice H,Pitluck S,Cheng JF,Sims D,Meincke L,Bruce D,Goodwin L,Brettin T,Han C,Detter JC,Ovchinikova G,Pati A,Mavromatis K,Mikhailova N,C

更新日期：2009-12-30 00:00:00

abstract：:Mycoplasma testudineum is one of the pathogens that can cause upper respiratory tract disease in desert tortoises, Gopherus agassizii. We sequenced the genome of M. testudineum BH29T (ATCC 700618T = MCCM 03231T), isolated from the upper respiratory tract of a Mojave desert tortoise with upper respiratory tract disease...

journal_title：Standards in genomic sciences

authors： Weitzman CL,Tillett RL,Sandmeier FC,Tracy CR,Alvarez-Ponce D

更新日期：2018-04-11 00:00:00

abstract：:Staphylococcus cohnii subsp. cohnii belongs to the family Staphylococcaceae in the order Bacillales, class Bacilli and phylum Firmicutes. The increasing relevance of S. cohnii to human health prompted us to determine the genomic sequence of Staphylococcus cohnii subsp. cohnii strain hu-01, a multidrug-resistant isolat...

journal_title：Standards in genomic sciences

authors： Hu X,Li A,Lv L,Yuan C,Guo L,Jiang X,Jiang H,Qian G,Zheng B,Guo J,Li L

更新日期：2014-03-15 00:00:00

abstract：:A lytic bacteriophage RG-2014 infecting a biofilm forming multidrug resistant bacterium Delftia tsuruhatensis strain ARB-1 as its host was isolated from a full-scale municipal wastewater treatment plant. Lytic phage RG-2014 was isolated for developing phage based therapeutic approaches against Delftia tsuruhatensis st...

journal_title：Standards in genomic sciences

authors： Bhattacharjee AS,Motlagh AM,Gilcrease EB,Islam MI,Casjens SR,Goel R

更新日期：2017-12-18 00:00:00

abstract：:Nereida ignava strain 2SM4(T) (= CECT 5292(T) = DSM 16309(T) = CIP 108404(T) = CCUG 49433(T)) is a marine bacterium belonging to the Roseobacter group of the family Rhodobacteraceae within the class Alphaproteobacteria. The strain was isolated from sea water surrounding cultivated oysters 2-3 miles off the Mediterrane...

journal_title：Standards in genomic sciences

authors： Arahal DR,Pujalte MJ,Rodrigo-Torres L

更新日期：2016-02-29 00:00:00

abstract：:Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. H. utahensis is a free-living, motile, rod shaped to pleomorphic, Gram-negative archaeon, wh...

journal_title：Standards in genomic sciences

authors： Anderson I,Tindall BJ,Pomrenke H,Göker M,Lapidus A,Nolan M,Copeland A,Glavina Del Rio T,Chen F,Tice H,Cheng JF,Lucas S,Chertkov O,Bruce D,Brettin T,Detter JC,Han C,Goodwin L,Land M,Hauser L,Chang YJ,Jeffries CD

更新日期：2009-11-22 00:00:00

abstract：:Enterobacter mori strain 5-4 is a Gram-negative, motile, rod shaped, and facultatively anaerobic bacterium, which was isolated from a mixture of formation water (also known as oil-reservior water) and crude-oil in Karamay oilfield, China. To date, there is only one E. mori genome has been sequenced and very little kno...

journal_title：Standards in genomic sciences

authors： Zhang F,Su S,Yu G,Zheng B,Shu F,Wang Z,Xiang T,Dong H,Zhang Z,Hou D,She Y

更新日期：2015-02-27 00:00:00

abstract：:Methanoculleus bourgensis strain MAB1 has been identified as the hydrogenotrophic partner of mesophilic acetate-oxidising bacteria, a syntrophic relationship operating close to the thermodynamic equilibrium and of considerable importance in ammonia-rich engineered biogas processes. Methanoculleus bourgensis strain MAB...

journal_title：Standards in genomic sciences

authors： Manzoor S,Schnürer A,Bongcam-Rudloff E,Müller B

更新日期：2016-10-12 00:00:00

abstract：:The Roseophages, a group of marine viruses that uniquely infect the Roseobacter clade of bacteria, play a significant role in marine ecosystems. Here we present a complete genomic sequence of an N4 phage 'vB_DshP-R1', which infects Dinoroseobacter shibae DFL12, together with its structural and genomic features. vB_Dsh...

journal_title：Standards in genomic sciences

authors： Ji J,Zhang R,Jiao N

更新日期：2015-01-21 00:00:00

abstract：:Strain 3.5.1 was isolated from soils of the Republic of Tatarstan, Russia, on the basis of presence of a high phytate-degrading activity. Strains with such activities attract special interest because of its potential use as feed additives and natural manures. Strain 3.5.1 harbors a 99 % 16S rRNA nucleotide sequence si...

journal_title：Standards in genomic sciences

authors： Suleimanova AD,Toymentseva AA,Boulygina EA,Kazakov SV,Mardanova AM,Balaban NP,Sharipova MR

更新日期：2015-11-11 00:00:00

abstract：:Streptomyces hyaluromycini MB-PO13T (=NBRC 110483T = DSM 100105T) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of the genome sequence. The 11...

journal_title：Standards in genomic sciences

authors： Harunari E,Komaki H,Ichikawa N,Hosoyama A,Kimura A,Hamada M,Igarashi Y

更新日期：2018-01-11 00:00:00

abstract：:Mesotoga strain PhosAc3 was the first mesophilic cultivated member of the order Thermotogales. This genus currently contain two described species, M. prima and M. infera. Strain PhosAc3, isolated from a Tunisian digestor treating phosphogypsum, is phylogenetically closely related to M. prima strain MesG1.Ag.4.2(T). St...

journal_title：Standards in genomic sciences

authors： Ben Hania W,Fadhlaoui K,Brochier-Armanet C,Persillon C,Postec A,Hamdi M,Dolla A,Ollivier B,Fardeau ML,Le Mer J,Erauso G

更新日期：2015-05-01 00:00:00

abstract：:A strain of a hyperthermophilic filamentous archaeon was isolated from a sample of Kamchatka hot spring sediment. Isolate 1807-2 grew optimally at 85 °C, pH 6.0-6.5, the parameters being close to those at the sampling site. 16S rRNA gene sequence analysis placed the novel isolate in the crenarchaeal genus Thermofilum;...

journal_title：Standards in genomic sciences

authors： Toshchakov SV,Korzhenkov AA,Samarov NI,Mazunin IO,Mozhey OI,Shmyr IS,Derbikova KS,Taranov EA,Dominova IN,Bonch-Osmolovskaya EA,Patrushev MV,Podosokorskaya OA,Kublanov IV

更新日期：2015-12-09 00:00:00

abstract：:Thermus brockianus strain GE-1 is a thermophilic, Gram-negative, rod-shaped and non-motile bacterium that was isolated from the Geysir geothermal area, Iceland. Like other thermophiles, Thermus species are often used as model organisms to understand the mechanism of action of extremozymes, especially focusing on their...

journal_title：Standards in genomic sciences

authors： Schäfers C,Blank S,Wiebusch S,Elleuche S,Antranikian G

更新日期：2017-02-03 00:00:00

abstract：:Mucilaginibacter pedocola TBZ30T (= CCTCC AB 2015301T = KCTC 42833T) is a Gram- negative, rod-shaped, non-motile and non-spore-forming bacterium isolated from a heavy metal contaminated paddy field. It shows resistance to multiple heavy metals and can adsorb/remove Zn2+ and Cd2+ during cultivation. In addition, strain...

journal_title：Standards in genomic sciences

authors： Fan X,Tang J,Nie L,Huang J,Wang G

更新日期：2018-11-28 00:00:00

abstract：:Thermosediminibacter oceani (Lee et al. 2006) is the type species of the genus Thermosediminibacter in the family Thermoanaerobacteraceae. The anaerobic, barophilic, chemoorganotrophic thermophile is characterized by straight to curved Gram-negative rods. The strain described in this study was isolated from a core sam...

journal_title：Standards in genomic sciences

authors： Pitluck S,Yasawong M,Munk C,Nolan M,Lapidus A,Lucas S,Glavina Del Rio T,Tice H,Cheng JF,Bruce D,Detter C,Tapia R,Han C,Goodwin L,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Land M,

更新日期：2010-09-28 00:00:00

abstract：:Leptonema illini Hovind-Hougen 1979 is the type species of the genus Leptonema, family Leptospiraceae, phylum Spirochaetes. Organisms of this family have a Gram-negative-like cell envelope consisting of a cytoplasmic membrane and an outer membrane. The peptidoglycan layer is associated with the cytoplasmic rather than...

journal_title：Standards in genomic sciences

authors： Huntemann M,Stackebrandt E,Held B,Nolan M,Lucas S,Hammon N,Deshpande S,Cheng JF,Tapia R,Goodwin LA,Pitluck S,Liolios K,Pagani I,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Land M,Rohde M,Gron

更新日期：2013-05-25 00:00:00

abstract：:Chryseobacterium bovis DSM 19482T (Hantsis-Zacharov et al., Int J Syst Evol Microbiol 58:1024-1028, 2008) is a Gram-negative, rod shaped, non-motile, facultative anaerobe, chemoorganotroph bacterium. C. bovis is a member of the Flavobacteriaceae, a family within the phylum Bacteroidetes. It was isolated when psychroto...

journal_title：Standards in genomic sciences

authors： Laviad-Shitrit S,Göker M,Huntemann M,Clum A,Pillay M,Palaniappan K,Varghese N,Mikhailova N,Stamatis D,Reddy TBK,Daum C,Shapiro N,Markowitz V,Ivanova N,Woyke T,Klenk HP,Kyrpides NC,Halpern M

更新日期：2017-05-08 00:00:00

abstract：:Syntrophobacter fumaroxidans strain MPOB(T) is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H2 and CO2 during the overall degradation of organic matter, and its release of pro...

journal_title：Standards in genomic sciences

authors： Plugge CM,Henstra AM,Worm P,Swarts DC,Paulitsch-Fuchs AH,Scholten JC,Lykidis A,Lapidus AL,Goltsman E,Kim E,McDonald E,Rohlin L,Crable BR,Gunsalus RP,Stams AJ,McInerney MJ

更新日期：2012-10-10 00:00:00