Abstract:
:The nonheterocystous filamentous cyanobacterium, strain ESFC-1, is a recently described member of the order Oscillatoriales within the Cyanobacteria. ESFC-1 has been shown to be a major diazotroph in the intertidal microbial mat system at Elkhorn Slough, CA, USA. Based on phylogenetic analyses of the 16S RNA gene, ESFC-1 appears to belong to a unique, genus-level divergence; the draft genome sequence of this strain has now been determined. Here we report features of this genome as they relate to the ecological functions and capabilities of strain ESFC-1. The 5,632,035 bp genome sequence encodes 4914 protein-coding genes and 92 RNA genes. One striking feature of this cyanobacterium is the apparent lack of either uptake or bi-directional hydrogenases typically expected within a diazotroph. Additionally, a large genomic island is found that contains numerous low GC-content genes and genes related to extracellular polysaccharide production and cell wall synthesis and maintenance.
journal_name
Stand Genomic Scijournal_title
Standards in genomic sciencesauthors
Everroad RC,Stuart RK,Bebout BM,Detweiler AM,Lee JZ,Woebken D,Prufert-Bebout L,Pett-Ridge Jdoi
10.1186/s40793-016-0174-6subject
Has Abstractpub_date
2016-08-24 00:00:00pages
53issue
1issn
1944-3277pii
174journal_volume
11pub_type
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