Complete genome sequence of Methanoculleus bourgensis strain MAB1, the syntrophic partner of mesophilic acetate-oxidising bacteria (SAOB).

abstract：:Thioalkalivibrio thiocyanoxidans strain ARh 2(T) is a sulfur-oxidizing bacterium isolated from haloalkaline soda lakes. It is a motile, Gram-negative member of the Gammaproteobacteria. Remarkable properties include the ability to grow on thiocyanate as the sole energy, sulfur and nitrogen source, and the capability of...

journal_title：Standards in genomic sciences

authors： Berben T,Sorokin DY,Ivanova N,Pati A,Kyrpides N,Goodwin LA,Woyke T,Muyzer G

更新日期：2015-10-26 00:00:00

abstract：:Polynucleobacter necessarius subsp. asymbioticus strain QLW-P1DMWA-1(T) is a planktonic freshwater bacterium affiliated with the family Burkholderiaceae (class Betaproteobacteria). This strain is of interest because it represents a subspecies with cosmopolitan and ubiquitous distribution in standing freshwater systems...

journal_title：Standards in genomic sciences

authors： Meincke L,Copeland A,Lapidus A,Lucas S,Berry KW,Del Rio TG,Hammon N,Dalin E,Tice H,Pitluck S,Richardson P,Bruce D,Goodwin L,Han C,Tapia R,Detter JC,Schmutz J,Brettin T,Larimer F,Land M,Hauser L,Kyrpides NC,Iva

更新日期：2012-03-19 00:00:00

abstract：:As causal agents of bacterial wilt in pastures and meadows, bacteria of the species Xanthomonas translucens are a serious issue in forage grass production. So far, only little is known about host-pathogen interactions at the molecular level and the lack of comprehensive genome data impeded targeted breeding strategies...

journal_title：Standards in genomic sciences

authors： Hersemann L,Wibberg D,Widmer F,Vorhölter FJ,Kölliker R

更新日期：2016-08-17 00:00:00

abstract：:Leptonema illini Hovind-Hougen 1979 is the type species of the genus Leptonema, family Leptospiraceae, phylum Spirochaetes. Organisms of this family have a Gram-negative-like cell envelope consisting of a cytoplasmic membrane and an outer membrane. The peptidoglycan layer is associated with the cytoplasmic rather than...

journal_title：Standards in genomic sciences

authors： Huntemann M,Stackebrandt E,Held B,Nolan M,Lucas S,Hammon N,Deshpande S,Cheng JF,Tapia R,Goodwin LA,Pitluck S,Liolios K,Pagani I,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Land M,Rohde M,Gron

更新日期：2013-05-25 00:00:00

abstract：:Syntrophobacter fumaroxidans strain MPOB(T) is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H2 and CO2 during the overall degradation of organic matter, and its release of pro...

journal_title：Standards in genomic sciences

authors： Plugge CM,Henstra AM,Worm P,Swarts DC,Paulitsch-Fuchs AH,Scholten JC,Lykidis A,Lapidus AL,Goltsman E,Kim E,McDonald E,Rohlin L,Crable BR,Gunsalus RP,Stams AJ,McInerney MJ

更新日期：2012-10-10 00:00:00

abstract：:Sphingomonas paucimobilis strain LCT-SP1 is a glucose-nonfermenting Gram-negative, chemoheterotrophic, strictly aerobic bacterium. The major feature of strain LCT-SP1, isolated from the Chinese spacecraft Shenzhou X, together with the genome draft and annotation are described in this paper. The total size of strain LC...

journal_title：Standards in genomic sciences

authors： Pan L,Zhou H,Li J,Huang B,Guo J,Zhang XL,Gao LC,Xu C,Liu CT

更新日期：2016-02-24 00:00:00

abstract：:This report summarizes the proceedings of the second workshop of the 'Minimum Information for Biological and Biomedical Investigations' (MIBBI) consortium held on Dec 1-2, 2010 in Rüdesheim, Germany through the sponsorship of the Beilstein-Institute. MIBBI is an umbrella organization uniting communities developing Min...

journal_title：Standards in genomic sciences

authors： Kettner C,Field D,Sansone SA,Taylor C,Aerts J,Binns N,Blake A,Britten CM,de Marco A,Fostel J,Gaudet P,González-Beltrán A,Hardy N,Hellemans J,Hermjakob H,Juty N,Leebens-Mack J,Maguire E,Neumann S,Orchard S,Parkinso

更新日期：2010-12-25 00:00:00

abstract：:Bacteria belonging to the genus Pectobacterium are responsible for soft rot disease on a wide range of cultivated crops. The "Pectobacterium peruviense" specie, recently proposed inside the Pectobacterium genus, gathers strains isolated from potato tubers cultivated in Peru at high altitude. Here we report the draft g...

journal_title：Standards in genomic sciences

authors： Faye P,Bertrand C,Pédron J,Barny MA

更新日期：2018-10-12 00:00:00

abstract：:Desulfurobacterium thermolithotrophum L'Haridon et al. 1998 is the type species of the genus Desulfurobacterium which belongs to the family Desulfurobacteriaceae. The species is of interest because it represents the first thermophilic bacterium that can act as a primary producer in the temperature range of 45-75 °C (o...

journal_title：Standards in genomic sciences

authors： Göker M,Daligault H,Mwirichia R,Lapidus A,Lucas S,Deshpande S,Pagani I,Tapia R,Cheng JF,Goodwin L,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Han C,Land M,Hauser L,Pan C,

更新日期：2011-12-31 00:00:00

abstract：:Flavobacterium seoulense strain EM1321(T) is the type strain of Flavobacterium seoulense sp. nov., a proposed novel species within the genus Flavobacterium. This strain is a Gram-reaction-negative, aerobic, rod-shaped bacterium isolated from stream water in Bukhansan National Park, Seoul. This organism is motile by gl...

journal_title：Standards in genomic sciences

authors： Shin SK,Goo H,Cho YJ,Kwon S,Yong D,Yi H

更新日期：2014-12-29 00:00:00

abstract：:Strain CCMM B554, also known as FSM-MA, is a soil dwelling and nodule forming, nitrogen-fixing bacterium isolated from the nodules of the legume Medicago arborea L. in the Maamora Forest, Morocco. The strain forms effective nitrogen fixing nodules on species of the Medicago, Melilotus and Trigonella genera and is exce...

journal_title：Standards in genomic sciences

authors： Nagymihály M,Vásarhelyi BM,Barrière Q,Chong TM,Bálint B,Bihari P,Hong KW,Horváth B,Ibijbijen J,Amar M,Farkas A,Kondorosi É,Chan KG,Gruber V,Ratet P,Mergaert P,Kereszt A

更新日期：2017-12-13 00:00:00

abstract：:Enorma massiliensis strain phI(T) is the type strain of E. massiliensis gen. nov., sp. nov., the type species of a new genus within the family Coriobacteriaceae, Enorma gen. nov. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. E. mass...

journal_title：Standards in genomic sciences

authors： Mishra AK,Hugon P,Lagier JC,Nguyen TT,Couderc C,Raoult D,Fournier PE

更新日期：2013-06-06 00:00:00

abstract：:A lytic bacteriophage RG-2014 infecting a biofilm forming multidrug resistant bacterium Delftia tsuruhatensis strain ARB-1 as its host was isolated from a full-scale municipal wastewater treatment plant. Lytic phage RG-2014 was isolated for developing phage based therapeutic approaches against Delftia tsuruhatensis st...

journal_title：Standards in genomic sciences

authors： Bhattacharjee AS,Motlagh AM,Gilcrease EB,Islam MI,Casjens SR,Goel R

更新日期：2017-12-18 00:00:00

abstract：:Thiobacillus thioparus DSM 505T is one of first two isolated strains of inorganic sulfur-oxidising Bacteria. The original strain of T. thioparus was lost almost 100 years ago and the working type strain is Culture CT (=DSM 505T = ATCC 8158T) isolated by Starkey in 1934 from agricultural soil at Rutgers University, New...

journal_title：Standards in genomic sciences

authors： Hutt LP,Huntemann M,Clum A,Pillay M,Palaniappan K,Varghese N,Mikhailova N,Stamatis D,Reddy T,Daum C,Shapiro N,Ivanova N,Kyrpides N,Woyke T,Boden R

更新日期：2017-01-19 00:00:00

abstract：:Pseudomonas lutea OK2(T) (=LMG 21974(T), CECT 5822(T)) is the type strain of the species and was isolated from the rhizosphere of grass growing in Spain in 2003 based on its phosphate-solubilizing capacity. In order to identify the functional significance of phosphate solubilization in Pseudomonas Plant growth promoti...

journal_title：Standards in genomic sciences

authors： Kwak Y,Park GS,Shin JH

更新日期：2016-08-23 00:00:00

abstract：:Brachyspira murdochii Stanton et al. 1992 is a non-pathogenic, host-associated spirochete of the family Brachyspiraceae. Initially isolated from the intestinal content of a healthy swine, the 'group B spirochaetes' were first described as Serpulina murdochii. Members of the family Brachyspiraceae are of great phylogen...

journal_title：Standards in genomic sciences

authors： Pati A,Sikorski J,Gronow S,Munk C,Lapidus A,Copeland A,Glavina Del Tio T,Nolan M,Lucas S,Chen F,Tice H,Cheng JF,Han C,Detter JC,Bruce D,Tapia R,Goodwin L,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,

更新日期：2010-06-15 00:00:00

abstract：:Phaeobacter arcticus Zhang et al. 2008 belongs to the marine Roseobacter clade whose members are phylogenetically and physiologically diverse. In contrast to the type species of this genus, Phaeobacter gallaeciensis, which is well characterized, relatively little is known about the characteristics of P. arcticus. Here...

journal_title：Standards in genomic sciences

authors： Freese HM,Dalingault H,Petersen J,Pradella S,Davenport K,Teshima H,Chen A,Pati A,Ivanova N,Goodwin LA,Chain P,Detter JC,Rohde M,Gronow S,Kyrpides NC,Woyke T,Brinkhoff T,Göker M,Overmann J,Klenk HP

更新日期：2013-07-30 00:00:00

abstract：:Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing ability of this strain,...

journal_title：Standards in genomic sciences

authors： Zeytun A,Sikorski J,Nolan M,Lapidus A,Lucas S,Han J,Tice H,Cheng JF,Tapia R,Goodwin L,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Ovchinnikova G,Pati A,Chen A,Palaniappan K,Ngatchou-Djao OD,Land M,Ha

更新日期：2011-04-29 00:00:00

abstract：:Cronobacter sakazakii is a Gram-negative opportunistic pathogen that causes life- threatening infantile infections, such as meningitis, septicemia, and necrotizing enterocolitis, as well as pneumonia, septicemia, and urinary tract and wound infections in adults. Here, we report 26 draft genome sequences of C. sakazaki...

journal_title：Standards in genomic sciences

authors： Jang H,Woo J,Lee Y,Negrete F,Finkelstein S,Chase HR,Addy N,Ewing L,Beaubrun JJG,Patel I,Gangiredla J,Eshwar A,Jaradat ZW,Seo K,Shabarinath S,Fanning S,Stephan R,Lehner A,Tall BD,Gopinath GR

更新日期：2018-11-29 00:00:00

abstract：:Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft genome sequence and ann...

journal_title：Standards in genomic sciences

authors： Ntougias S,Lapidus A,Copeland A,Reddy TB,Pati A,Ivanova NN,Markowitz VM,Klenk HP,Woyke T,Fasseas C,Kyrpides NC,Zervakis GI

更新日期：2015-08-13 00:00:00

abstract：:The type strain of the prospective 10.1601/nm.30737 sp. nov. ERR11T, was isolated from a nodule of the leguminous tree Erythrina brucei native to Ethiopia. The type strain 10.1601/nm.1463 10.1601/strainfinder?urlappend=%3Fid%3DCCBAU+10071 T, was isolated from the nodules of Lespedeza cuneata in Beijing, China. The gen...

journal_title：Standards in genomic sciences

authors： Aserse AA,Woyke T,Kyrpides NC,Whitman WB,Lindström K

更新日期：2017-12-05 00:00:00

abstract：:The nonheterocystous filamentous cyanobacterium, strain ESFC-1, is a recently described member of the order Oscillatoriales within the Cyanobacteria. ESFC-1 has been shown to be a major diazotroph in the intertidal microbial mat system at Elkhorn Slough, CA, USA. Based on phylogenetic analyses of the 16S RNA gene, ESF...

journal_title：Standards in genomic sciences

authors： Everroad RC,Stuart RK,Bebout BM,Detweiler AM,Lee JZ,Woebken D,Prufert-Bebout L,Pett-Ridge J

更新日期：2016-08-24 00:00:00

abstract：:Streptomyces hyaluromycini MB-PO13T (=NBRC 110483T = DSM 100105T) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of the genome sequence. The 11...

journal_title：Standards in genomic sciences

authors： Harunari E,Komaki H,Ichikawa N,Hosoyama A,Kimura A,Hamada M,Igarashi Y

更新日期：2018-01-11 00:00:00

abstract：:Natrinema altunense strain AJ2T, a halophilic archaeal strain, was isolated from a high-altitude (3884 m) salt lake in Xinjiang, China. This strain requires at least 1.7 M NaCl to grow and can grow anaerobically in the presence of nitrate. To understand the genetics underlying its extreme phenotype, we de novo assembl...

journal_title：Standards in genomic sciences

authors： Cheng H,Huo YY,Hu J,Xu XW,Wu M

更新日期：2017-03-01 00:00:00

abstract：:Staphylococcus cohnii subsp. cohnii belongs to the family Staphylococcaceae in the order Bacillales, class Bacilli and phylum Firmicutes. The increasing relevance of S. cohnii to human health prompted us to determine the genomic sequence of Staphylococcus cohnii subsp. cohnii strain hu-01, a multidrug-resistant isolat...

journal_title：Standards in genomic sciences

authors： Hu X,Li A,Lv L,Yuan C,Guo L,Jiang X,Jiang H,Qian G,Zheng B,Guo J,Li L

更新日期：2014-03-15 00:00:00

abstract：:The genus Porphyrobacter belongs to aerobic anoxygenic phototrophic bacteria cluster. Porphyrobacter neustonensis DSM 9434 was isolated from a eutrophic freshwater pond in Australia, and is able to synthesize Bacteriochlorophyll a as well as grow under aerobic conditions. It is the type species of the genus Porphyroba...

journal_title：Standards in genomic sciences

authors： Liu Q,Wu YH,Cheng H,Xu L,Wang CS,Xu XW

更新日期：2017-05-10 00:00:00

abstract：:Microvirga lupini LUT6(T) is an aerobic, non-motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Lupinus texensis. LUT6(T) was isolated in 2006 from a nodule recovered from the roots of the annual L. texensis growing in Travis Co., Texas. LUT6(T) forms a hig...

journal_title：Standards in genomic sciences

authors： Reeve W,Parker M,Tian R,Goodwin L,Teshima H,Tapia R,Han C,Han J,Liolios K,Huntemann M,Pati A,Woyke T,Mavromatis K,Markowitz V,Ivanova N,Kyrpides N

更新日期：2014-03-01 00:00:00

abstract：:Strain T5(T) is the type strain of the species Phaeobacter inhibens Martens et al. 2006, a secondary metabolite producing bacterium affiliated to the Roseobacter clade. Strain T5(T) was isolated from a water sample taken at the German Wadden Sea, southern North Sea. Here we describe the complete genome sequence and an...

journal_title：Standards in genomic sciences

authors： Dogs M,Voget S,Teshima H,Petersen J,Davenport K,Dalingault H,Chen A,Pati A,Ivanova N,Goodwin LA,Chain P,Detter JC,Standfest S,Rohde M,Gronow S,Kyrpides NC,Woyke T,Simon M,Klenk HP,Göker M,Brinkhoff T

更新日期：2013-12-15 00:00:00

abstract：:The family Hyphomonadaceae within the Alphaproteobacteria is largely comprised of bacteria isolated from marine environments with striking morphologies and an unusual mode of cell growth. Here, we report the complete genome sequence Hirschia baltica, which is only the second a member of the Hyphomonadaceae with a publ...

journal_title：Standards in genomic sciences

authors： Chertkov O,Brown PJ,Kysela DT,de Pedro MA,Lucas S,Copeland A,Lapidus A,Del Rio TG,Tice H,Bruce D,Goodwin L,Pitluck S,Detter JC,Han C,Larimer F,Chang YJ,Jeffries CD,Land M,Hauser L,Kyrpides NC,Ivanova N,Ovchinnik

更新日期：2011-12-31 00:00:00

abstract：:Ensifer (Sinorhizobium) medicae is an effective nitrogen fixing microsymbiont of a diverse range of annual Medicago (medic) species. Strain WSM419 is an aerobic, motile, non-spore forming, Gram-negative rod isolated from a M. murex root nodule collected in Sardinia, Italy in 1981. WSM419 was manufactured commercially ...

journal_title：Standards in genomic sciences

authors： Reeve W,Chain P,O'Hara G,Ardley J,Nandesena K,Bräu L,Tiwari R,Malfatti S,Kiss H,Lapidus A,Copeland A,Nolan M,Land M,Hauser L,Chang YJ,Ivanova N,Mavromatis K,Markowitz V,Kyrpides N,Gollagher M,Yates R,Dilworth M

更新日期：2010-01-28 00:00:00