Draft genome sequences of Bradyrhizobium shewense sp. nov. ERR11T and Bradyrhizobium yuanmingense CCBAU 10071T.

abstract：:The Roseophages, a group of marine viruses that uniquely infect the Roseobacter clade of bacteria, play a significant role in marine ecosystems. Here we present a complete genomic sequence of an N4 phage 'vB_DshP-R1', which infects Dinoroseobacter shibae DFL12, together with its structural and genomic features. vB_Dsh...

journal_title：Standards in genomic sciences

authors： Ji J,Zhang R,Jiao N

更新日期：2015-01-21 00:00:00

abstract：:Flavobacterium seoulense strain EM1321(T) is the type strain of Flavobacterium seoulense sp. nov., a proposed novel species within the genus Flavobacterium. This strain is a Gram-reaction-negative, aerobic, rod-shaped bacterium isolated from stream water in Bukhansan National Park, Seoul. This organism is motile by gl...

journal_title：Standards in genomic sciences

authors： Shin SK,Goo H,Cho YJ,Kwon S,Yong D,Yi H

更新日期：2014-12-29 00:00:00

abstract：:Syntrophobacter fumaroxidans strain MPOB(T) is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H2 and CO2 during the overall degradation of organic matter, and its release of pro...

journal_title：Standards in genomic sciences

authors： Plugge CM,Henstra AM,Worm P,Swarts DC,Paulitsch-Fuchs AH,Scholten JC,Lykidis A,Lapidus AL,Goltsman E,Kim E,McDonald E,Rohlin L,Crable BR,Gunsalus RP,Stams AJ,McInerney MJ

更新日期：2012-10-10 00:00:00

abstract：:Methanoplanus petrolearius Ollivier et al. 1998 is the type strain of the genus Methanoplanus. The strain was originally isolated from an offshore oil field from the Gulf of Guinea. Members of the genus Methanoplanus are of interest because they play an important role in the carbon cycle and also because of their sign...

journal_title：Standards in genomic sciences

authors： Brambilla E,Djao OD,Daligault H,Lapidus A,Lucas S,Hammon N,Nolan M,Tice H,Cheng JF,Han C,Tapia R,Goodwin L,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Land M,Hauser L,Ch

更新日期：2010-10-27 00:00:00

abstract：:We report the genome of a Staphylococcus aureus strain (ILRI_Eymole1/1) isolated from a nasal swab of a dromedary camel (Camelus dromedarius) in North Kenya. The complete genome sequence of this strain consists of a circular chromosome of 2,874,302 bp with a GC-content of 32.88 %. In silico annotation predicted 2755 p...

journal_title：Standards in genomic sciences

authors： Zubair S,Fischer A,Liljander A,Meens J,Hegerman J,Gourlé H,Bishop RP,Roebbelen I,Younan M,Mustafa MI,Mushtaq M,Bongcam-Rudloff E,Jores J

更新日期：2015-11-20 00:00:00

abstract：:In this study, following its isolation from contaminated soil, the genomic sequence of Pseudomonas alcaliphila strain JAB1 (=DSM 26533), a biphenyl-degrading bacterium, is reported and analyzed in relation to its extensive degradative capabilities. The P. alcaliphila JAB1 genome (GenBank accession no. CP016162) consis...

journal_title：Standards in genomic sciences

authors： Ridl J,Suman J,Fraraccio S,Hradilova M,Strejcek M,Cajthaml T,Zubrova A,Macek T,Strnad H,Uhlik O

更新日期：2018-02-01 00:00:00

abstract：:Roseovarius mucosus Biebl et al. 2005 is a bacteriochlorophyll a-producing representative of the marine Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, which was isolated from the dinoflagellate Alexandrium ostenfeldii. The marine Roseobacter group was found to be abundant in the ocean and p...

journal_title：Standards in genomic sciences

authors： Riedel T,Spring S,Fiebig A,Scheuner C,Petersen J,Göker M,Klenk HP

更新日期：2015-03-19 00:00:00

abstract：:Agromyces aureus AR33T is a Gram-positive, rod-shaped and motile bacterium belonging to the Microbacteriaceae family in the phylum Actinobacteria that was isolated from a former zinc/lead mining and processing site in Austria. In this study, the whole genome was sequenced and assembled combining sequences obtained fro...

journal_title：Standards in genomic sciences

authors： Corretto E,Antonielli L,Sessitsch A,Compant S,Höfer C,Puschenreiter M,Brader G

更新日期：2017-01-05 00:00:00

abstract：:Halomonas zhanjiangensis Chen et al. 2009 is a member of the genus Halomonas, family Halomonadaceae, class Gammaproteobacteria. Representatives of the genus Halomonas are a group of halophilic bacteria often isolated from salty environments. The type strain H. zhanjiangensis JSM 078169(T) was isolated from a sea urchi...

journal_title：Standards in genomic sciences

authors： Zhou Y,Li R,Gao XY,Lapidus A,Han J,Haynes M,Lobos E,Huntemann M,Pati A,Ivanova NN,Rohde M,Mavromatis K,Tindall BJ,Markowitz V,Woyke T,Klenk HP,Kyrpides NC,Li WJ

更新日期：2014-04-11 00:00:00

abstract：:Phage ST0 lysing Escherichia coli H8 was isolated from wastewater and sequenced using an Illumina HiSeq system. Genomic analyses revealed that it was virulent phages and contained a circular double-stranded DNA genome, consisting of 170,496 nucleotides with an average G + C content of 37.67%. This study may provide po...

journal_title：Standards in genomic sciences

authors： Liu H,Liu X,Li J

更新日期：2017-12-19 00:00:00

abstract：:Pedobacter steynii DX4 was isolated from the soil of Tibetan Plateau and it can use crude oil as sole carbon and energy source at 15 °C. The genome of Pedobacter steynii DX4 has been sequenced and served as basis for analysis its metabolic mechanism. It is the first genome of crude oil degrading strain in Pedobacter g...

journal_title：Standards in genomic sciences

authors： Chang S,Zhang G,Chen X,Long H,Wang Y,Chen T,Liu G

更新日期：2017-07-27 00:00:00

abstract：:A strain of a hyperthermophilic filamentous archaeon was isolated from a sample of Kamchatka hot spring sediment. Isolate 1807-2 grew optimally at 85 °C, pH 6.0-6.5, the parameters being close to those at the sampling site. 16S rRNA gene sequence analysis placed the novel isolate in the crenarchaeal genus Thermofilum;...

journal_title：Standards in genomic sciences

authors： Toshchakov SV,Korzhenkov AA,Samarov NI,Mazunin IO,Mozhey OI,Shmyr IS,Derbikova KS,Taranov EA,Dominova IN,Bonch-Osmolovskaya EA,Patrushev MV,Podosokorskaya OA,Kublanov IV

更新日期：2015-12-09 00:00:00

abstract：:Mycoplasma testudineum is one of the pathogens that can cause upper respiratory tract disease in desert tortoises, Gopherus agassizii. We sequenced the genome of M. testudineum BH29T (ATCC 700618T = MCCM 03231T), isolated from the upper respiratory tract of a Mojave desert tortoise with upper respiratory tract disease...

journal_title：Standards in genomic sciences

authors： Weitzman CL,Tillett RL,Sandmeier FC,Tracy CR,Alvarez-Ponce D

更新日期：2018-04-11 00:00:00

abstract：:Desulfurobacterium thermolithotrophum L'Haridon et al. 1998 is the type species of the genus Desulfurobacterium which belongs to the family Desulfurobacteriaceae. The species is of interest because it represents the first thermophilic bacterium that can act as a primary producer in the temperature range of 45-75 °C (o...

journal_title：Standards in genomic sciences

authors： Göker M,Daligault H,Mwirichia R,Lapidus A,Lucas S,Deshpande S,Pagani I,Tapia R,Cheng JF,Goodwin L,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Han C,Land M,Hauser L,Pan C,

更新日期：2011-12-31 00:00:00

abstract：:Methylibium sp. strain T29 was isolated from a gasoline-contaminated aquifer and proved to have excellent capabilities in degrading some common fuel oxygenates like methyl tert-butyl ether, tert-amyl methyl ether and tert-butyl alcohol along with other organic compounds. Here, we report the draft genome sequence of M....

journal_title：Standards in genomic sciences

authors： Szabó Z,Gyula P,Robotka H,Bató E,Gálik B,Pach P,Pekker P,Papp I,Bihari Z

更新日期：2015-07-19 00:00:00

abstract：:Ferroglobus placidus belongs to the order Archaeoglobales within the archaeal phylum Euryarchaeota. Strain AEDII12DO is the type strain of the species and was isolated from a shallow marine hydrothermal system at Vulcano, Italy. It is a hyperthermophilic, anaerobic chemolithoautotroph, but it can also use a variety of...

journal_title：Standards in genomic sciences

authors： Anderson I,Risso C,Holmes D,Lucas S,Copeland A,Lapidus A,Cheng JF,Bruce D,Goodwin L,Pitluck S,Saunders E,Brettin T,Detter JC,Han C,Tapia R,Larimer F,Land M,Hauser L,Woyke T,Lovley D,Kyrpides N,Ivanova N

更新日期：2011-10-15 00:00:00

abstract：:The nonheterocystous filamentous cyanobacterium, strain ESFC-1, is a recently described member of the order Oscillatoriales within the Cyanobacteria. ESFC-1 has been shown to be a major diazotroph in the intertidal microbial mat system at Elkhorn Slough, CA, USA. Based on phylogenetic analyses of the 16S RNA gene, ESF...

journal_title：Standards in genomic sciences

authors： Everroad RC,Stuart RK,Bebout BM,Detweiler AM,Lee JZ,Woebken D,Prufert-Bebout L,Pett-Ridge J

更新日期：2016-08-24 00:00:00

abstract：:The tenacious association between strains of the heterotrophic alphaproteobacterial genus Acidiphilium and chemolithotrophic iron oxidizing bacteria has long been known. In this context the genome of the heterotroph Acidiphilium sp. JA12-A1, an isolate from an iron oxidizing mixed culture derived from a pilot plant fo...

journal_title：Standards in genomic sciences

authors： Ullrich SR,Poehlein A,Voget S,Hoppert M,Daniel R,Leimbach A,Tischler JS,Schlömann M,Mühling M

更新日期：2015-08-19 00:00:00

abstract：:A lytic bacteriophage RG-2014 infecting a biofilm forming multidrug resistant bacterium Delftia tsuruhatensis strain ARB-1 as its host was isolated from a full-scale municipal wastewater treatment plant. Lytic phage RG-2014 was isolated for developing phage based therapeutic approaches against Delftia tsuruhatensis st...

journal_title：Standards in genomic sciences

authors： Bhattacharjee AS,Motlagh AM,Gilcrease EB,Islam MI,Casjens SR,Goel R

更新日期：2017-12-18 00:00:00

abstract：:Streptobacillus moniliformis Levaditi et al. 1925 is the type and sole species of the genus Streptobacillus, and is of phylogenetic interest because of its isolated location in the sparsely populated and neither taxonomically nor genomically much accessed family 'Leptotrichiaceae' within the phylum Fusobacteria. The '...

journal_title：Standards in genomic sciences

authors： Nolan M,Gronow S,Lapidus A,Ivanova N,Copeland A,Lucas S,Del Rio TG,Chen F,Tice H,Pitluck S,Cheng JF,Sims D,Meincke L,Bruce D,Goodwin L,Brettin T,Han C,Detter JC,Ovchinikova G,Pati A,Mavromatis K,Mikhailova N,C

更新日期：2009-12-30 00:00:00

abstract：:Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft genome sequence and ann...

journal_title：Standards in genomic sciences

authors： Ntougias S,Lapidus A,Copeland A,Reddy TB,Pati A,Ivanova NN,Markowitz VM,Klenk HP,Woyke T,Fasseas C,Kyrpides NC,Zervakis GI

更新日期：2015-08-13 00:00:00

abstract：:Brachyspira murdochii Stanton et al. 1992 is a non-pathogenic, host-associated spirochete of the family Brachyspiraceae. Initially isolated from the intestinal content of a healthy swine, the 'group B spirochaetes' were first described as Serpulina murdochii. Members of the family Brachyspiraceae are of great phylogen...

journal_title：Standards in genomic sciences

authors： Pati A,Sikorski J,Gronow S,Munk C,Lapidus A,Copeland A,Glavina Del Tio T,Nolan M,Lucas S,Chen F,Tice H,Cheng JF,Han C,Detter JC,Bruce D,Tapia R,Goodwin L,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,

更新日期：2010-06-15 00:00:00

abstract：:Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing ability of this strain,...

journal_title：Standards in genomic sciences

authors： Zeytun A,Sikorski J,Nolan M,Lapidus A,Lucas S,Han J,Tice H,Cheng JF,Tapia R,Goodwin L,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Ovchinnikova G,Pati A,Chen A,Palaniappan K,Ngatchou-Djao OD,Land M,Ha

更新日期：2011-04-29 00:00:00

abstract：:Candidatus Arsenophonus lipopteni (Enterobacteriaceae, Gammaproteobacteria) is an obligate intracellular symbiont of the blood feeding deer ked, Lipoptena cervi (Diptera: Hippoboscidae). The bacteria reside in specialized cells derived from host gut epithelia (bacteriocytes) forming a compact symbiotic organ (bacterio...

journal_title：Standards in genomic sciences

authors： Nováková E,Hypša V,Nguyen P,Husník F,Darby AC

更新日期：2016-09-17 00:00:00

abstract：:Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. H. utahensis is a free-living, motile, rod shaped to pleomorphic, Gram-negative archaeon, wh...

journal_title：Standards in genomic sciences

authors： Anderson I,Tindall BJ,Pomrenke H,Göker M,Lapidus A,Nolan M,Copeland A,Glavina Del Rio T,Chen F,Tice H,Cheng JF,Lucas S,Chertkov O,Bruce D,Brettin T,Detter JC,Han C,Goodwin L,Land M,Hauser L,Chang YJ,Jeffries CD

更新日期：2009-11-22 00:00:00

abstract：:Herein, we report the draft-genome sequences and annotation of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from humans. One strain (SC-57) was isolated from blood from a male patient in May 2006 and the other (SC-532) from a catheter from a male patient in June 2006. Similar to other genomes...

journal_title：Standards in genomic sciences

authors： Mendoza-Olazarán S,Garcia-Mazcorro JF,Morfín-Otero R,Villarreal-Treviño L,Camacho-Ortiz A,Rodríguez-Noriega E,Bocanegra-Ibarias P,Maldonado-Garza HJ,Dowd SE,Garza-González E

更新日期：2017-08-31 00:00:00

abstract：:Mesorhizobium loti strain NZP2037 was isolated in 1961 in Palmerston North, New Zealand from a Lotus divaricatus root nodule. Compared to most other M. loti strains, it has a broad host range and is one of very few M. loti strains able to form effective nodules on the agriculturally important legume Lotus pedunculatus...

journal_title：Standards in genomic sciences

authors： Kelly S,Sullivan J,Ronson C,Tian R,Bräu L,Davenport K,Daligault H,Erkkila T,Goodwin L,Gu W,Munk C,Teshima H,Xu Y,Chain P,Woyke T,Liolios K,Pati A,Mavromatis K,Markowitz V,Ivanova N,Kyrpides N,Reeve W

更新日期：2014-12-08 00:00:00

abstract：:This report details the outcome of the 13(th) Meeting of the Genomic Standards Consortium. The three-day conference was held at the Kingkey Palace Hotel, Shenzhen, China, on March 5-7, 2012, and was hosted by the Beijing Genomics Institute. The meeting, titled From Genomes to Interactions to Communities to Models, hig...

journal_title：Standards in genomic sciences

authors： Gilbert JA,Bao Y,Wang H,Sansone SA,Edmunds SC,Morrison N,Meyer F,Schriml LM,Davies N,Sterk P,Wilkening J,Garrity GM,Field D,Robbins R,Smith DP,Mizrachi I,Moreau C

更新日期：2012-05-25 00:00:00

abstract：:Thioalkalivibrio thiocyanoxidans strain ARh 2(T) is a sulfur-oxidizing bacterium isolated from haloalkaline soda lakes. It is a motile, Gram-negative member of the Gammaproteobacteria. Remarkable properties include the ability to grow on thiocyanate as the sole energy, sulfur and nitrogen source, and the capability of...

journal_title：Standards in genomic sciences

authors： Berben T,Sorokin DY,Ivanova N,Pati A,Kyrpides N,Goodwin LA,Woyke T,Muyzer G

更新日期：2015-10-26 00:00:00

abstract：:Ensifer (Sinorhizobium) medicae is an effective nitrogen fixing microsymbiont of a diverse range of annual Medicago (medic) species. Strain WSM419 is an aerobic, motile, non-spore forming, Gram-negative rod isolated from a M. murex root nodule collected in Sardinia, Italy in 1981. WSM419 was manufactured commercially ...

journal_title：Standards in genomic sciences

authors： Reeve W,Chain P,O'Hara G,Ardley J,Nandesena K,Bräu L,Tiwari R,Malfatti S,Kiss H,Lapidus A,Copeland A,Nolan M,Land M,Hauser L,Chang YJ,Ivanova N,Mavromatis K,Markowitz V,Kyrpides N,Gollagher M,Yates R,Dilworth M

更新日期：2010-01-28 00:00:00