Abstract:
:Ensifer (Sinorhizobium) medicae is an effective nitrogen fixing microsymbiont of a diverse range of annual Medicago (medic) species. Strain WSM419 is an aerobic, motile, non-spore forming, Gram-negative rod isolated from a M. murex root nodule collected in Sardinia, Italy in 1981. WSM419 was manufactured commercially in Australia as an inoculant for annual medics during 1985 to 1993 due to its nitrogen fixation, saprophytic competence and acid tolerance properties. Here we describe the basic features of this organism, together with the complete genome sequence, and annotation. This is the first report of a complete genome sequence for a microsymbiont of the group of annual medic species adapted to acid soils. We reveal that its genome size is 6,817,576 bp encoding 6,518 protein-coding genes and 81 RNA only encoding genes. The genome contains a chromosome of size 3,781,904 bp and 3 plasmids of size 1,570,951 bp, 1,245,408 bp and 219,313 bp. The smallest plasmid is a feature unique to this medic microsymbiont.
journal_name
Stand Genomic Scijournal_title
Standards in genomic sciencesauthors
Reeve W,Chain P,O'Hara G,Ardley J,Nandesena K,Bräu L,Tiwari R,Malfatti S,Kiss H,Lapidus A,Copeland A,Nolan M,Land M,Hauser L,Chang YJ,Ivanova N,Mavromatis K,Markowitz V,Kyrpides N,Gollagher M,Yates R,Dilworth Mdoi
10.4056/sigs.43526subject
Has Abstractpub_date
2010-01-28 00:00:00pages
77-86issue
1issn
1944-3277journal_volume
2pub_type
杂志文章abstract::Root nodule bacteria are free-living soil bacteria, belonging to diverse genera within the Alphaproteobacteria and Betaproteobacteria, that have the capacity to form nitrogen-fixing symbioses with legumes. The symbiosis is specific and is governed by signaling molecules produced from both host and bacteria. Sequencing...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.1186/1944-3277-10-14
更新日期:2015-02-09 00:00:00
abstract::Roseovarius mucosus Biebl et al. 2005 is a bacteriochlorophyll a-producing representative of the marine Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, which was isolated from the dinoflagellate Alexandrium ostenfeldii. The marine Roseobacter group was found to be abundant in the ocean and p...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.1186/1944-3277-10-17
更新日期:2015-03-19 00:00:00
abstract::Kurthia senegalensis strain JC8E(T) sp. nov. is the type strain of K. senegalensis sp. nov., a new species within the genus Kurthia. This strain, whose genome is described here, was isolated from the fecal flora of a healthy patient. K. senegalensis is an aerobic rod. Here we describe the features of this organism, to...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.5078947
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journal_title:Standards in genomic sciences
pub_type: 杂志文章
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更新日期:2014-03-15 00:00:00
abstract::Staphylococcus cohnii subsp. cohnii belongs to the family Staphylococcaceae in the order Bacillales, class Bacilli and phylum Firmicutes. The increasing relevance of S. cohnii to human health prompted us to determine the genomic sequence of Staphylococcus cohnii subsp. cohnii strain hu-01, a multidrug-resistant isolat...
journal_title:Standards in genomic sciences
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abstract::Phage ST0 lysing Escherichia coli H8 was isolated from wastewater and sequenced using an Illumina HiSeq system. Genomic analyses revealed that it was virulent phages and contained a circular double-stranded DNA genome, consisting of 170,496 nucleotides with an average G + C content of 37.67%. This study may provide po...
journal_title:Standards in genomic sciences
pub_type:
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更新日期:2017-12-19 00:00:00
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journal_title:Standards in genomic sciences
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更新日期:2018-10-12 00:00:00
abstract::Nereida ignava strain 2SM4(T) (= CECT 5292(T) = DSM 16309(T) = CIP 108404(T) = CCUG 49433(T)) is a marine bacterium belonging to the Roseobacter group of the family Rhodobacteraceae within the class Alphaproteobacteria. The strain was isolated from sea water surrounding cultivated oysters 2-3 miles off the Mediterrane...
journal_title:Standards in genomic sciences
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doi:10.1186/s40793-016-0141-2
更新日期:2016-02-29 00:00:00
abstract::Burkholderia sp. strain WSM2230 is an aerobic, motile, Gram-negative, non-spore-forming acid-tolerant rod isolated from acidic soil collected in 2001 from Karijini National Park, Western Australia, using Kennedia coccinea (Coral Vine) as a host. WSM2230 was initially effective in nitrogen-fixation with K. coccinea, bu...
journal_title:Standards in genomic sciences
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journal_title:Standards in genomic sciences
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journal_title:Standards in genomic sciences
pub_type: 杂志文章
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更新日期:2011-07-01 00:00:00
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journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0249-z
更新日期:2017-07-27 00:00:00
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journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0242-6
更新日期:2017-05-08 00:00:00
abstract::Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. H. utahensis is a free-living, motile, rod shaped to pleomorphic, Gram-negative archaeon, wh...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.31864
更新日期:2009-11-22 00:00:00
abstract::Pseudomonas lutea OK2(T) (=LMG 21974(T), CECT 5822(T)) is the type strain of the species and was isolated from the rhizosphere of grass growing in Spain in 2003 based on its phosphate-solubilizing capacity. In order to identify the functional significance of phosphate solubilization in Pseudomonas Plant growth promoti...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-016-0173-7
更新日期:2016-08-23 00:00:00
abstract::Weeksella virosa Holmes et al. 1987 is the sole member and type species of the genus Weeksella which belongs to the family Flavobacteriaceae of the phylum Bacteroidetes. Twenty-nine isolates, collected from clinical specimens provided the basis for the taxon description. While the species seems to be a saprophyte of t...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.1603927
更新日期:2011-02-22 00:00:00
abstract::Enorma massiliensis strain phI(T) is the type strain of E. massiliensis gen. nov., sp. nov., the type species of a new genus within the family Coriobacteriaceae, Enorma gen. nov. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. E. mass...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
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更新日期:2013-06-06 00:00:00
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journal_title:Standards in genomic sciences
pub_type:
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更新日期:2018-11-28 00:00:00
abstract::Mesotoga strain PhosAc3 was the first mesophilic cultivated member of the order Thermotogales. This genus currently contain two described species, M. prima and M. infera. Strain PhosAc3, isolated from a Tunisian digestor treating phosphogypsum, is phylogenetically closely related to M. prima strain MesG1.Ag.4.2(T). St...
journal_title:Standards in genomic sciences
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更新日期:2015-05-01 00:00:00
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journal_title:Standards in genomic sciences
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更新日期:2017-01-05 00:00:00
abstract::Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because...
journal_title:Standards in genomic sciences
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更新日期:2016-09-10 00:00:00
abstract::Thermosediminibacter oceani (Lee et al. 2006) is the type species of the genus Thermosediminibacter in the family Thermoanaerobacteraceae. The anaerobic, barophilic, chemoorganotrophic thermophile is characterized by straight to curved Gram-negative rods. The strain described in this study was isolated from a core sam...
journal_title:Standards in genomic sciences
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abstract::Brachyspira murdochii Stanton et al. 1992 is a non-pathogenic, host-associated spirochete of the family Brachyspiraceae. Initially isolated from the intestinal content of a healthy swine, the 'group B spirochaetes' were first described as Serpulina murdochii. Members of the family Brachyspiraceae are of great phylogen...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
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abstract::Herein, we report the draft-genome sequences and annotation of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from humans. One strain (SC-57) was isolated from blood from a male patient in May 2006 and the other (SC-532) from a catheter from a male patient in June 2006. Similar to other genomes...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0263-1
更新日期:2017-08-31 00:00:00
abstract::Mesorhizobium loti strain NZP2037 was isolated in 1961 in Palmerston North, New Zealand from a Lotus divaricatus root nodule. Compared to most other M. loti strains, it has a broad host range and is one of very few M. loti strains able to form effective nodules on the agriculturally important legume Lotus pedunculatus...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.1186/1944-3277-9-7
更新日期:2014-12-08 00:00:00
abstract::Strain T5(T) is the type strain of the species Phaeobacter inhibens Martens et al. 2006, a secondary metabolite producing bacterium affiliated to the Roseobacter clade. Strain T5(T) was isolated from a water sample taken at the German Wadden Sea, southern North Sea. Here we describe the complete genome sequence and an...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
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abstract::The family Hyphomonadaceae within the Alphaproteobacteria is largely comprised of bacteria isolated from marine environments with striking morphologies and an unusual mode of cell growth. Here, we report the complete genome sequence Hirschia baltica, which is only the second a member of the Hyphomonadaceae with a publ...
journal_title:Standards in genomic sciences
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更新日期:2011-12-31 00:00:00
abstract::Streptobacillus moniliformis Levaditi et al. 1925 is the type and sole species of the genus Streptobacillus, and is of phylogenetic interest because of its isolated location in the sparsely populated and neither taxonomically nor genomically much accessed family 'Leptotrichiaceae' within the phylum Fusobacteria. The '...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.48727
更新日期:2009-12-30 00:00:00
abstract::'Treponema phagedenis' is considered to be a key agent in the pathogenesis of bovine digital dermatitis, an infectious foot condition of economic and animal welfare importance. We hereby report the draft sequence of 'T. phagedenis' strain V1. The draft genome assembly consists of 51 scaffolds comprising 3,129,551 bp a...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.1186/s40793-015-0059-0
更新日期:2015-09-21 00:00:00
abstract::Streptomyces hyaluromycini MB-PO13T (=NBRC 110483T = DSM 100105T) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of the genome sequence. The 11...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0286-7
更新日期:2018-01-11 00:00:00