Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains.

abstract：:Ensifer (Sinorhizobium) medicae is an effective nitrogen fixing microsymbiont of a diverse range of annual Medicago (medic) species. Strain WSM419 is an aerobic, motile, non-spore forming, Gram-negative rod isolated from a M. murex root nodule collected in Sardinia, Italy in 1981. WSM419 was manufactured commercially ...

journal_title：Standards in genomic sciences

authors： Reeve W,Chain P,O'Hara G,Ardley J,Nandesena K,Bräu L,Tiwari R,Malfatti S,Kiss H,Lapidus A,Copeland A,Nolan M,Land M,Hauser L,Chang YJ,Ivanova N,Mavromatis K,Markowitz V,Kyrpides N,Gollagher M,Yates R,Dilworth M

更新日期：2010-01-28 00:00:00

abstract：:Rhizobium leguminosarum bv. trifolii SRDI943 (strain syn. V2-2) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Trifolium michelianum Savi cv. Paradana that had been grown in soil collected from a mixed pasture in Victoria, Australia. This isolate was found to have a...

journal_title：Standards in genomic sciences

authors： Reeve W,Drew E,Ballard R,Melino V,Tian R,De Meyer S,Brau L,Ninawi M,Daligault H,Davenport K,Erkkila T,Goodwin L,Gu W,Munk C,Teshima H,Xu Y,Chain P,Kyrpides N

更新日期：2013-12-15 00:00:00

abstract：:Streptomyces hyaluromycini MB-PO13T (=NBRC 110483T = DSM 100105T) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of the genome sequence. The 11...

journal_title：Standards in genomic sciences

authors： Harunari E,Komaki H,Ichikawa N,Hosoyama A,Kimura A,Hamada M,Igarashi Y

更新日期：2018-01-11 00:00:00

abstract：:Spirosoma linguale Migula 1894 is the type species of the genus. S. linguale is a free-living and non-pathogenic organism, known for its peculiar ringlike and horseshoe-shaped cell morphology. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is only the th...

journal_title：Standards in genomic sciences

authors： Lail K,Sikorski J,Saunders E,Lapidus A,Glavina Del Rio T,Copeland A,Tice H,Cheng JF,Lucas S,Nolan M,Bruce D,Goodwin L,Pitluck S,Ivanova N,Mavromatis K,Ovchinnikova G,Pati A,Chen A,Palaniappan K,Land M,Hauser L,C

更新日期：2010-03-30 00:00:00

abstract：:Polynucleobacter necessarius subsp. asymbioticus strain QLW-P1DMWA-1(T) is a planktonic freshwater bacterium affiliated with the family Burkholderiaceae (class Betaproteobacteria). This strain is of interest because it represents a subspecies with cosmopolitan and ubiquitous distribution in standing freshwater systems...

journal_title：Standards in genomic sciences

authors： Meincke L,Copeland A,Lapidus A,Lucas S,Berry KW,Del Rio TG,Hammon N,Dalin E,Tice H,Pitluck S,Richardson P,Bruce D,Goodwin L,Han C,Tapia R,Detter JC,Schmutz J,Brettin T,Larimer F,Land M,Hauser L,Kyrpides NC,Iva

更新日期：2012-03-19 00:00:00

abstract：:Phaeobacter arcticus Zhang et al. 2008 belongs to the marine Roseobacter clade whose members are phylogenetically and physiologically diverse. In contrast to the type species of this genus, Phaeobacter gallaeciensis, which is well characterized, relatively little is known about the characteristics of P. arcticus. Here...

journal_title：Standards in genomic sciences

authors： Freese HM,Dalingault H,Petersen J,Pradella S,Davenport K,Teshima H,Chen A,Pati A,Ivanova N,Goodwin LA,Chain P,Detter JC,Rohde M,Gronow S,Kyrpides NC,Woyke T,Brinkhoff T,Göker M,Overmann J,Klenk HP

更新日期：2013-07-30 00:00:00

abstract：:Herein, we report the draft-genome sequences and annotation of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from humans. One strain (SC-57) was isolated from blood from a male patient in May 2006 and the other (SC-532) from a catheter from a male patient in June 2006. Similar to other genomes...

journal_title：Standards in genomic sciences

authors： Mendoza-Olazarán S,Garcia-Mazcorro JF,Morfín-Otero R,Villarreal-Treviño L,Camacho-Ortiz A,Rodríguez-Noriega E,Bocanegra-Ibarias P,Maldonado-Garza HJ,Dowd SE,Garza-González E

更新日期：2017-08-31 00:00:00

abstract：:The genus Porphyrobacter belongs to aerobic anoxygenic phototrophic bacteria cluster. Porphyrobacter neustonensis DSM 9434 was isolated from a eutrophic freshwater pond in Australia, and is able to synthesize Bacteriochlorophyll a as well as grow under aerobic conditions. It is the type species of the genus Porphyroba...

journal_title：Standards in genomic sciences

authors： Liu Q,Wu YH,Cheng H,Xu L,Wang CS,Xu XW

更新日期：2017-05-10 00:00:00

abstract：:The nonheterocystous filamentous cyanobacterium, strain ESFC-1, is a recently described member of the order Oscillatoriales within the Cyanobacteria. ESFC-1 has been shown to be a major diazotroph in the intertidal microbial mat system at Elkhorn Slough, CA, USA. Based on phylogenetic analyses of the 16S RNA gene, ESF...

journal_title：Standards in genomic sciences

authors： Everroad RC,Stuart RK,Bebout BM,Detweiler AM,Lee JZ,Woebken D,Prufert-Bebout L,Pett-Ridge J

更新日期：2016-08-24 00:00:00

abstract：:'Treponema phagedenis' is considered to be a key agent in the pathogenesis of bovine digital dermatitis, an infectious foot condition of economic and animal welfare importance. We hereby report the draft sequence of 'T. phagedenis' strain V1. The draft genome assembly consists of 51 scaffolds comprising 3,129,551 bp a...

journal_title：Standards in genomic sciences

authors： Mushtaq M,Manzoor S,Pringle M,Rosander A,Bongcam-Rudloff E

更新日期：2015-09-21 00:00:00

abstract：:We report the genome of a Staphylococcus aureus strain (ILRI_Eymole1/1) isolated from a nasal swab of a dromedary camel (Camelus dromedarius) in North Kenya. The complete genome sequence of this strain consists of a circular chromosome of 2,874,302 bp with a GC-content of 32.88 %. In silico annotation predicted 2755 p...

journal_title：Standards in genomic sciences

authors： Zubair S,Fischer A,Liljander A,Meens J,Hegerman J,Gourlé H,Bishop RP,Roebbelen I,Younan M,Mustafa MI,Mushtaq M,Bongcam-Rudloff E,Jores J

更新日期：2015-11-20 00:00:00

abstract：:Thermus brockianus strain GE-1 is a thermophilic, Gram-negative, rod-shaped and non-motile bacterium that was isolated from the Geysir geothermal area, Iceland. Like other thermophiles, Thermus species are often used as model organisms to understand the mechanism of action of extremozymes, especially focusing on their...

journal_title：Standards in genomic sciences

authors： Schäfers C,Blank S,Wiebusch S,Elleuche S,Antranikian G

更新日期：2017-02-03 00:00:00

abstract：:Methylibium sp. strain T29 was isolated from a gasoline-contaminated aquifer and proved to have excellent capabilities in degrading some common fuel oxygenates like methyl tert-butyl ether, tert-amyl methyl ether and tert-butyl alcohol along with other organic compounds. Here, we report the draft genome sequence of M....

journal_title：Standards in genomic sciences

authors： Szabó Z,Gyula P,Robotka H,Bató E,Gálik B,Pach P,Pekker P,Papp I,Bihari Z

更新日期：2015-07-19 00:00:00

abstract：:Alistipes obesi sp. nov. strain ph8(T) is the type strain of A. obesi, a new species within the genus Alistipes. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. A. obesi is an obligately anaerobic rod. Here we describe the features of...

journal_title：Standards in genomic sciences

authors： Hugon P,Ramasamy D,Lagier JC,Rivet R,Couderc C,Raoult D,Fournier PE

更新日期：2013-02-25 00:00:00

abstract：:Lutibacter profundi LP1T within the family Flavobacteriaceae was isolated from a biofilm growing on the surface of a black smoker chimney at the Loki's Castle vent field, located on the Arctic Mid-Ocean Ridge. The complete genome of L. profundi LP1T is the first genome to be published within the genus Lutibacter. L. p...

journal_title：Standards in genomic sciences

authors： Wissuwa J,Bauer SL,Steen IH,Stokke R

更新日期：2017-01-07 00:00:00

abstract：:Bacteroides coprosuis Whitehead et al. 2005 belongs to the genus Bacteroides, which is a member of the family Bacteroidaceae. Members of the genus Bacteroides in general are known as beneficial protectors of animal guts against pathogenic microorganisms, and as contributors to the degradation of complex molecules such...

journal_title：Standards in genomic sciences

authors： Land M,Held B,Gronow S,Abt B,Lucas S,Del Rio TG,Nolan M,Tice H,Cheng JF,Pitluck S,Liolios K,Pagani I,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Tapia R,Han C,Goodwin L,Chen A,Palaniappan K,Hauser L,Brambilla E

更新日期：2011-04-29 00:00:00

abstract：:Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft genome sequence and ann...

journal_title：Standards in genomic sciences

authors： Ntougias S,Lapidus A,Copeland A,Reddy TB,Pati A,Ivanova NN,Markowitz VM,Klenk HP,Woyke T,Fasseas C,Kyrpides NC,Zervakis GI

更新日期：2015-08-13 00:00:00

abstract：:Kurthia senegalensis strain JC8E(T) sp. nov. is the type strain of K. senegalensis sp. nov., a new species within the genus Kurthia. This strain, whose genome is described here, was isolated from the fecal flora of a healthy patient. K. senegalensis is an aerobic rod. Here we describe the features of this organism, to...

journal_title：Standards in genomic sciences

authors： Roux V,Lagier JC,Gorlas A,Robert C,Raoult D

更新日期：2014-02-20 00:00:00

abstract：:Syntrophobacter fumaroxidans strain MPOB(T) is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H2 and CO2 during the overall degradation of organic matter, and its release of pro...

journal_title：Standards in genomic sciences

authors： Plugge CM,Henstra AM,Worm P,Swarts DC,Paulitsch-Fuchs AH,Scholten JC,Lykidis A,Lapidus AL,Goltsman E,Kim E,McDonald E,Rohlin L,Crable BR,Gunsalus RP,Stams AJ,McInerney MJ

更新日期：2012-10-10 00:00:00

abstract：:Root nodule bacteria are free-living soil bacteria, belonging to diverse genera within the Alphaproteobacteria and Betaproteobacteria, that have the capacity to form nitrogen-fixing symbioses with legumes. The symbiosis is specific and is governed by signaling molecules produced from both host and bacteria. Sequencing...

journal_title：Standards in genomic sciences

authors： Reeve W,Ardley J,Tian R,Eshragi L,Yoon JW,Ngamwisetkun P,Seshadri R,Ivanova NN,Kyrpides NC

更新日期：2015-02-09 00:00:00

abstract：:Methanoplanus petrolearius Ollivier et al. 1998 is the type strain of the genus Methanoplanus. The strain was originally isolated from an offshore oil field from the Gulf of Guinea. Members of the genus Methanoplanus are of interest because they play an important role in the carbon cycle and also because of their sign...

journal_title：Standards in genomic sciences

authors： Brambilla E,Djao OD,Daligault H,Lapidus A,Lucas S,Hammon N,Nolan M,Tice H,Cheng JF,Han C,Tapia R,Goodwin L,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Land M,Hauser L,Ch

更新日期：2010-10-27 00:00:00

abstract：:This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elemental sulfur to H2S...

journal_title：Standards in genomic sciences

authors： Susanti D,Johnson EF,Lapidus A,Han J,Reddy TB,Pilay M,Ivanova NN,Markowitz VM,Woyke T,Kyrpides NC,Mukhopadhyay B

更新日期：2016-01-13 00:00:00

abstract：:The family Hyphomonadaceae within the Alphaproteobacteria is largely comprised of bacteria isolated from marine environments with striking morphologies and an unusual mode of cell growth. Here, we report the complete genome sequence Hirschia baltica, which is only the second a member of the Hyphomonadaceae with a publ...

journal_title：Standards in genomic sciences

authors： Chertkov O,Brown PJ,Kysela DT,de Pedro MA,Lucas S,Copeland A,Lapidus A,Del Rio TG,Tice H,Bruce D,Goodwin L,Pitluck S,Detter JC,Han C,Larimer F,Chang YJ,Jeffries CD,Land M,Hauser L,Kyrpides NC,Ivanova N,Ovchinnik

更新日期：2011-12-31 00:00:00

abstract：:The Roseophages, a group of marine viruses that uniquely infect the Roseobacter clade of bacteria, play a significant role in marine ecosystems. Here we present a complete genomic sequence of an N4 phage 'vB_DshP-R1', which infects Dinoroseobacter shibae DFL12, together with its structural and genomic features. vB_Dsh...

journal_title：Standards in genomic sciences

authors： Ji J,Zhang R,Jiao N

更新日期：2015-01-21 00:00:00

abstract：:Burkholderia sp. strain WSM2230 is an aerobic, motile, Gram-negative, non-spore-forming acid-tolerant rod isolated from acidic soil collected in 2001 from Karijini National Park, Western Australia, using Kennedia coccinea (Coral Vine) as a host. WSM2230 was initially effective in nitrogen-fixation with K. coccinea, bu...

journal_title：Standards in genomic sciences

authors： Walker R,Watkin E,Tian R,Bräu L,O'Hara G,Goodwin L,Han J,Lobos E,Huntemann M,Pati A,Woyke T,Mavromatis K,Markowitz V,Ivanova N,Kyrpides N,Reeve W

更新日期：2013-12-31 00:00:00

abstract：:Leptonema illini Hovind-Hougen 1979 is the type species of the genus Leptonema, family Leptospiraceae, phylum Spirochaetes. Organisms of this family have a Gram-negative-like cell envelope consisting of a cytoplasmic membrane and an outer membrane. The peptidoglycan layer is associated with the cytoplasmic rather than...

journal_title：Standards in genomic sciences

authors： Huntemann M,Stackebrandt E,Held B,Nolan M,Lucas S,Hammon N,Deshpande S,Cheng JF,Tapia R,Goodwin LA,Pitluck S,Liolios K,Pagani I,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Land M,Rohde M,Gron

更新日期：2013-05-25 00:00:00

abstract：:The type strain of the prospective 10.1601/nm.30737 sp. nov. ERR11T, was isolated from a nodule of the leguminous tree Erythrina brucei native to Ethiopia. The type strain 10.1601/nm.1463 10.1601/strainfinder?urlappend=%3Fid%3DCCBAU+10071 T, was isolated from the nodules of Lespedeza cuneata in Beijing, China. The gen...

journal_title：Standards in genomic sciences

authors： Aserse AA,Woyke T,Kyrpides NC,Whitman WB,Lindström K

更新日期：2017-12-05 00:00:00

abstract：:Strain CCMM B554, also known as FSM-MA, is a soil dwelling and nodule forming, nitrogen-fixing bacterium isolated from the nodules of the legume Medicago arborea L. in the Maamora Forest, Morocco. The strain forms effective nitrogen fixing nodules on species of the Medicago, Melilotus and Trigonella genera and is exce...

journal_title：Standards in genomic sciences

authors： Nagymihály M,Vásarhelyi BM,Barrière Q,Chong TM,Bálint B,Bihari P,Hong KW,Horváth B,Ibijbijen J,Amar M,Farkas A,Kondorosi É,Chan KG,Gruber V,Ratet P,Mergaert P,Kereszt A

更新日期：2017-12-13 00:00:00

abstract：:Natrinema altunense strain AJ2T, a halophilic archaeal strain, was isolated from a high-altitude (3884 m) salt lake in Xinjiang, China. This strain requires at least 1.7 M NaCl to grow and can grow anaerobically in the presence of nitrate. To understand the genetics underlying its extreme phenotype, we de novo assembl...

journal_title：Standards in genomic sciences

authors： Cheng H,Huo YY,Hu J,Xu XW,Wu M

更新日期：2017-03-01 00:00:00

abstract：:Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. H. utahensis is a free-living, motile, rod shaped to pleomorphic, Gram-negative archaeon, wh...

journal_title：Standards in genomic sciences

authors： Anderson I,Tindall BJ,Pomrenke H,Göker M,Lapidus A,Nolan M,Copeland A,Glavina Del Rio T,Chen F,Tice H,Cheng JF,Lucas S,Chertkov O,Bruce D,Brettin T,Detter JC,Han C,Goodwin L,Land M,Hauser L,Chang YJ,Jeffries CD

更新日期：2009-11-22 00:00:00