Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139).

abstract：:Candidatus Arsenophonus lipopteni (Enterobacteriaceae, Gammaproteobacteria) is an obligate intracellular symbiont of the blood feeding deer ked, Lipoptena cervi (Diptera: Hippoboscidae). The bacteria reside in specialized cells derived from host gut epithelia (bacteriocytes) forming a compact symbiotic organ (bacterio...

journal_title：Standards in genomic sciences

authors： Nováková E,Hypša V,Nguyen P,Husník F,Darby AC

更新日期：2016-09-17 00:00:00

abstract：:Nereida ignava strain 2SM4(T) (= CECT 5292(T) = DSM 16309(T) = CIP 108404(T) = CCUG 49433(T)) is a marine bacterium belonging to the Roseobacter group of the family Rhodobacteraceae within the class Alphaproteobacteria. The strain was isolated from sea water surrounding cultivated oysters 2-3 miles off the Mediterrane...

journal_title：Standards in genomic sciences

authors： Arahal DR,Pujalte MJ,Rodrigo-Torres L

更新日期：2016-02-29 00:00:00

abstract：:The tenacious association between strains of the heterotrophic alphaproteobacterial genus Acidiphilium and chemolithotrophic iron oxidizing bacteria has long been known. In this context the genome of the heterotroph Acidiphilium sp. JA12-A1, an isolate from an iron oxidizing mixed culture derived from a pilot plant fo...

journal_title：Standards in genomic sciences

authors： Ullrich SR,Poehlein A,Voget S,Hoppert M,Daniel R,Leimbach A,Tischler JS,Schlömann M,Mühling M

更新日期：2015-08-19 00:00:00

abstract：:We report the genome of a Staphylococcus aureus strain (ILRI_Eymole1/1) isolated from a nasal swab of a dromedary camel (Camelus dromedarius) in North Kenya. The complete genome sequence of this strain consists of a circular chromosome of 2,874,302 bp with a GC-content of 32.88 %. In silico annotation predicted 2755 p...

journal_title：Standards in genomic sciences

authors： Zubair S,Fischer A,Liljander A,Meens J,Hegerman J,Gourlé H,Bishop RP,Roebbelen I,Younan M,Mustafa MI,Mushtaq M,Bongcam-Rudloff E,Jores J

更新日期：2015-11-20 00:00:00

abstract：:Enorma massiliensis strain phI(T) is the type strain of E. massiliensis gen. nov., sp. nov., the type species of a new genus within the family Coriobacteriaceae, Enorma gen. nov. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. E. mass...

journal_title：Standards in genomic sciences

authors： Mishra AK,Hugon P,Lagier JC,Nguyen TT,Couderc C,Raoult D,Fournier PE

更新日期：2013-06-06 00:00:00

abstract：:Although the hemipterans (Aphididae) are comprised of roughly 50,000 extant insect species, only four have sequenced genomes that are publically available, namely Acyrthosiphon pisum (pea aphid), Rhodnius prolixus (Kissing bug), Myzus persicae (Green peach aphid) and Diuraphis noxia (Russian wheat aphid). As a signifi...

journal_title：Standards in genomic sciences

authors： Burger NFV,Botha AM

更新日期：2017-12-28 00:00:00

abstract：:Flavihumibacter solisilvae 3-3(T) (= KACC 17917(T) = JCM 19891(T)) represents a type strain of the genus Flavihumibacter within the family Chitinophagaceae. This strain can use various sole carbon sources, making it applicable in industry and bioremediation. In this study, the draft genomic information of F. solisilva...

journal_title：Standards in genomic sciences

authors： Zhou G,Chen C,Jeon CO,Wang G,Li M

更新日期：2015-09-19 00:00:00

abstract：:This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elemental sulfur to H2S...

journal_title：Standards in genomic sciences

authors： Susanti D,Johnson EF,Lapidus A,Han J,Reddy TB,Pilay M,Ivanova NN,Markowitz VM,Woyke T,Kyrpides NC,Mukhopadhyay B

更新日期：2016-01-13 00:00:00

abstract：:Strain CCMM B554, also known as FSM-MA, is a soil dwelling and nodule forming, nitrogen-fixing bacterium isolated from the nodules of the legume Medicago arborea L. in the Maamora Forest, Morocco. The strain forms effective nitrogen fixing nodules on species of the Medicago, Melilotus and Trigonella genera and is exce...

journal_title：Standards in genomic sciences

authors： Nagymihály M,Vásarhelyi BM,Barrière Q,Chong TM,Bálint B,Bihari P,Hong KW,Horváth B,Ibijbijen J,Amar M,Farkas A,Kondorosi É,Chan KG,Gruber V,Ratet P,Mergaert P,Kereszt A

更新日期：2017-12-13 00:00:00

abstract：:Thiobacillus thioparus DSM 505T is one of first two isolated strains of inorganic sulfur-oxidising Bacteria. The original strain of T. thioparus was lost almost 100 years ago and the working type strain is Culture CT (=DSM 505T = ATCC 8158T) isolated by Starkey in 1934 from agricultural soil at Rutgers University, New...

journal_title：Standards in genomic sciences

authors： Hutt LP,Huntemann M,Clum A,Pillay M,Palaniappan K,Varghese N,Mikhailova N,Stamatis D,Reddy T,Daum C,Shapiro N,Ivanova N,Kyrpides N,Woyke T,Boden R

更新日期：2017-01-19 00:00:00

abstract：:Alistipes obesi sp. nov. strain ph8(T) is the type strain of A. obesi, a new species within the genus Alistipes. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. A. obesi is an obligately anaerobic rod. Here we describe the features of...

journal_title：Standards in genomic sciences

authors： Hugon P,Ramasamy D,Lagier JC,Rivet R,Couderc C,Raoult D,Fournier PE

更新日期：2013-02-25 00:00:00

abstract：:Methanoculleus bourgensis strain MAB1 has been identified as the hydrogenotrophic partner of mesophilic acetate-oxidising bacteria, a syntrophic relationship operating close to the thermodynamic equilibrium and of considerable importance in ammonia-rich engineered biogas processes. Methanoculleus bourgensis strain MAB...

journal_title：Standards in genomic sciences

authors： Manzoor S,Schnürer A,Bongcam-Rudloff E,Müller B

更新日期：2016-10-12 00:00:00

abstract：:Thioalkalivibrio thiocyanoxidans strain ARh 2(T) is a sulfur-oxidizing bacterium isolated from haloalkaline soda lakes. It is a motile, Gram-negative member of the Gammaproteobacteria. Remarkable properties include the ability to grow on thiocyanate as the sole energy, sulfur and nitrogen source, and the capability of...

journal_title：Standards in genomic sciences

authors： Berben T,Sorokin DY,Ivanova N,Pati A,Kyrpides N,Goodwin LA,Woyke T,Muyzer G

更新日期：2015-10-26 00:00:00

abstract：:Brachyspira murdochii Stanton et al. 1992 is a non-pathogenic, host-associated spirochete of the family Brachyspiraceae. Initially isolated from the intestinal content of a healthy swine, the 'group B spirochaetes' were first described as Serpulina murdochii. Members of the family Brachyspiraceae are of great phylogen...

journal_title：Standards in genomic sciences

authors： Pati A,Sikorski J,Gronow S,Munk C,Lapidus A,Copeland A,Glavina Del Tio T,Nolan M,Lucas S,Chen F,Tice H,Cheng JF,Han C,Detter JC,Bruce D,Tapia R,Goodwin L,Pitluck S,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,

更新日期：2010-06-15 00:00:00

abstract：:Mycoplasma testudineum is one of the pathogens that can cause upper respiratory tract disease in desert tortoises, Gopherus agassizii. We sequenced the genome of M. testudineum BH29T (ATCC 700618T = MCCM 03231T), isolated from the upper respiratory tract of a Mojave desert tortoise with upper respiratory tract disease...

journal_title：Standards in genomic sciences

authors： Weitzman CL,Tillett RL,Sandmeier FC,Tracy CR,Alvarez-Ponce D

更新日期：2018-04-11 00:00:00

abstract：:Bacteria belonging to the genus Pectobacterium are responsible for soft rot disease on a wide range of cultivated crops. The "Pectobacterium peruviense" specie, recently proposed inside the Pectobacterium genus, gathers strains isolated from potato tubers cultivated in Peru at high altitude. Here we report the draft g...

journal_title：Standards in genomic sciences

authors： Faye P,Bertrand C,Pédron J,Barny MA

更新日期：2018-10-12 00:00:00

abstract：:Strain M27-SA2 was isolated from the deep-sea salt-saturated anoxic lake Medee, which represents one of the most hostile extreme environments on our planet. On the basis of physiological studies and phylogenetic positioning this extremely halophilic euryarchaeon belongs to a novel genus 'Halanaeroarchaeum' within the ...

journal_title：Standards in genomic sciences

authors： Messina E,Sorokin DY,Kublanov IV,Toshchakov S,Lopatina A,Arcadi E,Smedile F,La Spada G,La Cono V,Yakimov MM

更新日期：2016-05-13 00:00:00

abstract：:Brachymonas chironomi strain AIMA4(T) (Halpern et al., 2009) is a Gram-negative, non-motile, aerobic, chemoorganotroph bacterium. B. chironomi is a member of the Comamonadaceae, a family within the class Betaproteobacteria. This species was isolated from a chironomid (Diptera; Chironomidae) egg mass, sampled from a wa...

journal_title：Standards in genomic sciences

authors： Laviad S,Lapidus A,Han J,Haynes M,Reddy T,Huntemann M,Pati A,Ivanova NN,Mavromatis K,Lang E,Rohde M,Markowitz V,Woyke T,Klenk HP,Kyrpides NC,Halpern M

更新日期：2015-05-27 00:00:00

abstract：:A strain of a hyperthermophilic filamentous archaeon was isolated from a sample of Kamchatka hot spring sediment. Isolate 1807-2 grew optimally at 85 °C, pH 6.0-6.5, the parameters being close to those at the sampling site. 16S rRNA gene sequence analysis placed the novel isolate in the crenarchaeal genus Thermofilum;...

journal_title：Standards in genomic sciences

authors： Toshchakov SV,Korzhenkov AA,Samarov NI,Mazunin IO,Mozhey OI,Shmyr IS,Derbikova KS,Taranov EA,Dominova IN,Bonch-Osmolovskaya EA,Patrushev MV,Podosokorskaya OA,Kublanov IV

更新日期：2015-12-09 00:00:00

abstract：:Root nodule bacteria are free-living soil bacteria, belonging to diverse genera within the Alphaproteobacteria and Betaproteobacteria, that have the capacity to form nitrogen-fixing symbioses with legumes. The symbiosis is specific and is governed by signaling molecules produced from both host and bacteria. Sequencing...

journal_title：Standards in genomic sciences

authors： Reeve W,Ardley J,Tian R,Eshragi L,Yoon JW,Ngamwisetkun P,Seshadri R,Ivanova NN,Kyrpides NC

更新日期：2015-02-09 00:00:00

abstract：:Enterobacter mori strain 5-4 is a Gram-negative, motile, rod shaped, and facultatively anaerobic bacterium, which was isolated from a mixture of formation water (also known as oil-reservior water) and crude-oil in Karamay oilfield, China. To date, there is only one E. mori genome has been sequenced and very little kno...

journal_title：Standards in genomic sciences

authors： Zhang F,Su S,Yu G,Zheng B,Shu F,Wang Z,Xiang T,Dong H,Zhang Z,Hou D,She Y

更新日期：2015-02-27 00:00:00

abstract：:Roseovarius mucosus Biebl et al. 2005 is a bacteriochlorophyll a-producing representative of the marine Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, which was isolated from the dinoflagellate Alexandrium ostenfeldii. The marine Roseobacter group was found to be abundant in the ocean and p...

journal_title：Standards in genomic sciences

authors： Riedel T,Spring S,Fiebig A,Scheuner C,Petersen J,Göker M,Klenk HP

更新日期：2015-03-19 00:00:00

abstract：:Phage ST0 lysing Escherichia coli H8 was isolated from wastewater and sequenced using an Illumina HiSeq system. Genomic analyses revealed that it was virulent phages and contained a circular double-stranded DNA genome, consisting of 170,496 nucleotides with an average G + C content of 37.67%. This study may provide po...

journal_title：Standards in genomic sciences

authors： Liu H,Liu X,Li J

更新日期：2017-12-19 00:00:00

abstract：:Mucilaginibacter pedocola TBZ30T (= CCTCC AB 2015301T = KCTC 42833T) is a Gram- negative, rod-shaped, non-motile and non-spore-forming bacterium isolated from a heavy metal contaminated paddy field. It shows resistance to multiple heavy metals and can adsorb/remove Zn2+ and Cd2+ during cultivation. In addition, strain...

journal_title：Standards in genomic sciences

authors： Fan X,Tang J,Nie L,Huang J,Wang G

更新日期：2018-11-28 00:00:00

abstract：:Thermosediminibacter oceani (Lee et al. 2006) is the type species of the genus Thermosediminibacter in the family Thermoanaerobacteraceae. The anaerobic, barophilic, chemoorganotrophic thermophile is characterized by straight to curved Gram-negative rods. The strain described in this study was isolated from a core sam...

journal_title：Standards in genomic sciences

authors： Pitluck S,Yasawong M,Munk C,Nolan M,Lapidus A,Lucas S,Glavina Del Rio T,Tice H,Cheng JF,Bruce D,Detter C,Tapia R,Han C,Goodwin L,Liolios K,Ivanova N,Mavromatis K,Mikhailova N,Pati A,Chen A,Palaniappan K,Land M,

更新日期：2010-09-28 00:00:00

abstract：:Syntrophobacter fumaroxidans strain MPOB(T) is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H2 and CO2 during the overall degradation of organic matter, and its release of pro...

journal_title：Standards in genomic sciences

authors： Plugge CM,Henstra AM,Worm P,Swarts DC,Paulitsch-Fuchs AH,Scholten JC,Lykidis A,Lapidus AL,Goltsman E,Kim E,McDonald E,Rohlin L,Crable BR,Gunsalus RP,Stams AJ,McInerney MJ

更新日期：2012-10-10 00:00:00

abstract：:The nonheterocystous filamentous cyanobacterium, strain ESFC-1, is a recently described member of the order Oscillatoriales within the Cyanobacteria. ESFC-1 has been shown to be a major diazotroph in the intertidal microbial mat system at Elkhorn Slough, CA, USA. Based on phylogenetic analyses of the 16S RNA gene, ESF...

journal_title：Standards in genomic sciences

authors： Everroad RC,Stuart RK,Bebout BM,Detweiler AM,Lee JZ,Woebken D,Prufert-Bebout L,Pett-Ridge J

更新日期：2016-08-24 00:00:00

abstract：:Polynucleobacter necessarius subsp. asymbioticus strain QLW-P1DMWA-1(T) is a planktonic freshwater bacterium affiliated with the family Burkholderiaceae (class Betaproteobacteria). This strain is of interest because it represents a subspecies with cosmopolitan and ubiquitous distribution in standing freshwater systems...

journal_title：Standards in genomic sciences

authors： Meincke L,Copeland A,Lapidus A,Lucas S,Berry KW,Del Rio TG,Hammon N,Dalin E,Tice H,Pitluck S,Richardson P,Bruce D,Goodwin L,Han C,Tapia R,Detter JC,Schmutz J,Brettin T,Larimer F,Land M,Hauser L,Kyrpides NC,Iva

更新日期：2012-03-19 00:00:00

abstract：:'Treponema phagedenis' is considered to be a key agent in the pathogenesis of bovine digital dermatitis, an infectious foot condition of economic and animal welfare importance. We hereby report the draft sequence of 'T. phagedenis' strain V1. The draft genome assembly consists of 51 scaffolds comprising 3,129,551 bp a...

journal_title：Standards in genomic sciences

authors： Mushtaq M,Manzoor S,Pringle M,Rosander A,Bongcam-Rudloff E

更新日期：2015-09-21 00:00:00

abstract：:Herein, we report the draft-genome sequences and annotation of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from humans. One strain (SC-57) was isolated from blood from a male patient in May 2006 and the other (SC-532) from a catheter from a male patient in June 2006. Similar to other genomes...

journal_title：Standards in genomic sciences

authors： Mendoza-Olazarán S,Garcia-Mazcorro JF,Morfín-Otero R,Villarreal-Treviño L,Camacho-Ortiz A,Rodríguez-Noriega E,Bocanegra-Ibarias P,Maldonado-Garza HJ,Dowd SE,Garza-González E

更新日期：2017-08-31 00:00:00