Abstract:
:Bacteria belonging to the genus Pectobacterium are responsible for soft rot disease on a wide range of cultivated crops. The "Pectobacterium peruviense" specie, recently proposed inside the Pectobacterium genus, gathers strains isolated from potato tubers cultivated in Peru at high altitude. Here we report the draft genome sequence of two strains belonging to "P. peruviense" isolated from river water in France indicating that the geographic distribution of this specie is likely to be larger than previously anticipated. We compared these genomes with the one published from the "P. peruviense" specie type strain isolated in Peru.
journal_name
Stand Genomic Scijournal_title
Standards in genomic sciencesauthors
Faye P,Bertrand C,Pédron J,Barny MAdoi
10.1186/s40793-018-0332-0subject
Has Abstractpub_date
2018-10-12 00:00:00pages
27issn
1944-3277pii
332journal_volume
13pub_type
abstract::Rhizobium leguminosarum bv. trifolii SRDI943 (strain syn. V2-2) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Trifolium michelianum Savi cv. Paradana that had been grown in soil collected from a mixed pasture in Victoria, Australia. This isolate was found to have a...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.4478252
更新日期:2013-12-15 00:00:00
abstract::Strain T5(T) is the type strain of the species Phaeobacter inhibens Martens et al. 2006, a secondary metabolite producing bacterium affiliated to the Roseobacter clade. Strain T5(T) was isolated from a water sample taken at the German Wadden Sea, southern North Sea. Here we describe the complete genome sequence and an...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.4448212
更新日期:2013-12-15 00:00:00
abstract::Mycoplasma testudineum is one of the pathogens that can cause upper respiratory tract disease in desert tortoises, Gopherus agassizii. We sequenced the genome of M. testudineum BH29T (ATCC 700618T = MCCM 03231T), isolated from the upper respiratory tract of a Mojave desert tortoise with upper respiratory tract disease...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-018-0309-z
更新日期:2018-04-11 00:00:00
abstract::'Treponema phagedenis' is considered to be a key agent in the pathogenesis of bovine digital dermatitis, an infectious foot condition of economic and animal welfare importance. We hereby report the draft sequence of 'T. phagedenis' strain V1. The draft genome assembly consists of 51 scaffolds comprising 3,129,551 bp a...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.1186/s40793-015-0059-0
更新日期:2015-09-21 00:00:00
abstract::Brachyspira murdochii Stanton et al. 1992 is a non-pathogenic, host-associated spirochete of the family Brachyspiraceae. Initially isolated from the intestinal content of a healthy swine, the 'group B spirochaetes' were first described as Serpulina murdochii. Members of the family Brachyspiraceae are of great phylogen...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.831993
更新日期:2010-06-15 00:00:00
abstract::We report the genome of a Staphylococcus aureus strain (ILRI_Eymole1/1) isolated from a nasal swab of a dromedary camel (Camelus dromedarius) in North Kenya. The complete genome sequence of this strain consists of a circular chromosome of 2,874,302 bp with a GC-content of 32.88 %. In silico annotation predicted 2755 p...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.1186/s40793-015-0098-6
更新日期:2015-11-20 00:00:00
abstract::Bacteroides coprosuis Whitehead et al. 2005 belongs to the genus Bacteroides, which is a member of the family Bacteroidaceae. Members of the genus Bacteroides in general are known as beneficial protectors of animal guts against pathogenic microorganisms, and as contributors to the degradation of complex molecules such...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.1784330
更新日期:2011-04-29 00:00:00
abstract::Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing ability of this strain,...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.1463589
更新日期:2011-04-29 00:00:00
abstract::Kurthia senegalensis strain JC8E(T) sp. nov. is the type strain of K. senegalensis sp. nov., a new species within the genus Kurthia. This strain, whose genome is described here, was isolated from the fecal flora of a healthy patient. K. senegalensis is an aerobic rod. Here we describe the features of this organism, to...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.5078947
更新日期:2014-02-20 00:00:00
abstract::Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the specie...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.20263
更新日期:2009-09-24 00:00:00
abstract::Methanoplanus petrolearius Ollivier et al. 1998 is the type strain of the genus Methanoplanus. The strain was originally isolated from an offshore oil field from the Gulf of Guinea. Members of the genus Methanoplanus are of interest because they play an important role in the carbon cycle and also because of their sign...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.1183143
更新日期:2010-10-27 00:00:00
abstract::This report summarizes the proceedings of the second workshop of the 'Minimum Information for Biological and Biomedical Investigations' (MIBBI) consortium held on Dec 1-2, 2010 in Rüdesheim, Germany through the sponsorship of the Beilstein-Institute. MIBBI is an umbrella organization uniting communities developing Min...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.147362
更新日期:2010-12-25 00:00:00
abstract::Strain CCMM B554, also known as FSM-MA, is a soil dwelling and nodule forming, nitrogen-fixing bacterium isolated from the nodules of the legume Medicago arborea L. in the Maamora Forest, Morocco. The strain forms effective nitrogen fixing nodules on species of the Medicago, Melilotus and Trigonella genera and is exce...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0298-3
更新日期:2017-12-13 00:00:00
abstract::Methanoculleus bourgensis strain MAB1 has been identified as the hydrogenotrophic partner of mesophilic acetate-oxidising bacteria, a syntrophic relationship operating close to the thermodynamic equilibrium and of considerable importance in ammonia-rich engineered biogas processes. Methanoculleus bourgensis strain MAB...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-016-0199-x
更新日期:2016-10-12 00:00:00
abstract::Staphylococcus cohnii subsp. cohnii belongs to the family Staphylococcaceae in the order Bacillales, class Bacilli and phylum Firmicutes. The increasing relevance of S. cohnii to human health prompted us to determine the genomic sequence of Staphylococcus cohnii subsp. cohnii strain hu-01, a multidrug-resistant isolat...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.5429581
更新日期:2014-03-15 00:00:00
abstract::Root nodule bacteria are free-living soil bacteria, belonging to diverse genera within the Alphaproteobacteria and Betaproteobacteria, that have the capacity to form nitrogen-fixing symbioses with legumes. The symbiosis is specific and is governed by signaling molecules produced from both host and bacteria. Sequencing...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.1186/1944-3277-10-14
更新日期:2015-02-09 00:00:00
abstract::A lytic bacteriophage RG-2014 infecting a biofilm forming multidrug resistant bacterium Delftia tsuruhatensis strain ARB-1 as its host was isolated from a full-scale municipal wastewater treatment plant. Lytic phage RG-2014 was isolated for developing phage based therapeutic approaches against Delftia tsuruhatensis st...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0290-y
更新日期:2017-12-18 00:00:00
abstract::Roseovarius mucosus Biebl et al. 2005 is a bacteriochlorophyll a-producing representative of the marine Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, which was isolated from the dinoflagellate Alexandrium ostenfeldii. The marine Roseobacter group was found to be abundant in the ocean and p...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.1186/1944-3277-10-17
更新日期:2015-03-19 00:00:00
abstract::Mucilaginibacter pedocola TBZ30T (= CCTCC AB 2015301T = KCTC 42833T) is a Gram- negative, rod-shaped, non-motile and non-spore-forming bacterium isolated from a heavy metal contaminated paddy field. It shows resistance to multiple heavy metals and can adsorb/remove Zn2+ and Cd2+ during cultivation. In addition, strain...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-018-0337-8
更新日期:2018-11-28 00:00:00
abstract::Syntrophobacter fumaroxidans strain MPOB(T) is the best-studied species of the genus Syntrophobacter. The species is of interest because of its anaerobic syntrophic lifestyle, its involvement in the conversion of propionate to acetate, H2 and CO2 during the overall degradation of organic matter, and its release of pro...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.2996379
更新日期:2012-10-10 00:00:00
abstract::Strain M27-SA2 was isolated from the deep-sea salt-saturated anoxic lake Medee, which represents one of the most hostile extreme environments on our planet. On the basis of physiological studies and phylogenetic positioning this extremely halophilic euryarchaeon belongs to a novel genus 'Halanaeroarchaeum' within the ...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-016-0155-9
更新日期:2016-05-13 00:00:00
abstract::Halomonas zhanjiangensis Chen et al. 2009 is a member of the genus Halomonas, family Halomonadaceae, class Gammaproteobacteria. Representatives of the genus Halomonas are a group of halophilic bacteria often isolated from salty environments. The type strain H. zhanjiangensis JSM 078169(T) was isolated from a sea urchi...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.5449586
更新日期:2014-04-11 00:00:00
abstract::Weeksella virosa Holmes et al. 1987 is the sole member and type species of the genus Weeksella which belongs to the family Flavobacteriaceae of the phylum Bacteroidetes. Twenty-nine isolates, collected from clinical specimens provided the basis for the taxon description. While the species seems to be a saprophyte of t...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.1603927
更新日期:2011-02-22 00:00:00
abstract::The type strain of the prospective 10.1601/nm.30737 sp. nov. ERR11T, was isolated from a nodule of the leguminous tree Erythrina brucei native to Ethiopia. The type strain 10.1601/nm.1463 10.1601/strainfinder?urlappend=%3Fid%3DCCBAU+10071 T, was isolated from the nodules of Lespedeza cuneata in Beijing, China. The gen...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0283-x
更新日期:2017-12-05 00:00:00
abstract::Thermus brockianus strain GE-1 is a thermophilic, Gram-negative, rod-shaped and non-motile bacterium that was isolated from the Geysir geothermal area, Iceland. Like other thermophiles, Thermus species are often used as model organisms to understand the mechanism of action of extremozymes, especially focusing on their...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0225-7
更新日期:2017-02-03 00:00:00
abstract::Pseudomonas lutea OK2(T) (=LMG 21974(T), CECT 5822(T)) is the type strain of the species and was isolated from the rhizosphere of grass growing in Spain in 2003 based on its phosphate-solubilizing capacity. In order to identify the functional significance of phosphate solubilization in Pseudomonas Plant growth promoti...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-016-0173-7
更新日期:2016-08-23 00:00:00
abstract::Microvirga lupini LUT6(T) is an aerobic, non-motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Lupinus texensis. LUT6(T) was isolated in 2006 from a nodule recovered from the roots of the annual L. texensis growing in Travis Co., Texas. LUT6(T) forms a hig...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.4056/sigs.5249382
更新日期:2014-03-01 00:00:00
abstract::The genus Porphyrobacter belongs to aerobic anoxygenic phototrophic bacteria cluster. Porphyrobacter neustonensis DSM 9434 was isolated from a eutrophic freshwater pond in Australia, and is able to synthesize Bacteriochlorophyll a as well as grow under aerobic conditions. It is the type species of the genus Porphyroba...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-017-0243-5
更新日期:2017-05-10 00:00:00
abstract::Cronobacter sakazakii is a Gram-negative opportunistic pathogen that causes life- threatening infantile infections, such as meningitis, septicemia, and necrotizing enterocolitis, as well as pneumonia, septicemia, and urinary tract and wound infections in adults. Here, we report 26 draft genome sequences of C. sakazaki...
journal_title:Standards in genomic sciences
pub_type:
doi:10.1186/s40793-018-0339-6
更新日期:2018-11-29 00:00:00
abstract::The tenacious association between strains of the heterotrophic alphaproteobacterial genus Acidiphilium and chemolithotrophic iron oxidizing bacteria has long been known. In this context the genome of the heterotroph Acidiphilium sp. JA12-A1, an isolate from an iron oxidizing mixed culture derived from a pilot plant fo...
journal_title:Standards in genomic sciences
pub_type: 杂志文章
doi:10.1186/s40793-015-0040-y
更新日期:2015-08-19 00:00:00