High quality draft genome sequence of an extremely halophilic archaeon Natrinema altunense strain AJ2T.

abstract：:Enterobacter mori strain 5-4 is a Gram-negative, motile, rod shaped, and facultatively anaerobic bacterium, which was isolated from a mixture of formation water (also known as oil-reservior water) and crude-oil in Karamay oilfield, China. To date, there is only one E. mori genome has been sequenced and very little kno...

journal_title：Standards in genomic sciences

authors： Zhang F,Su S,Yu G,Zheng B,Shu F,Wang Z,Xiang T,Dong H,Zhang Z,Hou D,She Y

更新日期：2015-02-27 00:00:00

abstract：:The bacterium Vibrio ordalii is best known as the causative agent of vibriosis outbreaks in fish and thus recognized for generating serious production losses in aquaculture systems. Here we report for the first time on the isolation and the genome sequencing of phage vB_VorS-PVo5, infectious to Vibrio ordalii ATCC 335...

journal_title：Standards in genomic sciences

authors： Echeverría-Vega A,Morales-Vicencio P,Saez-Saavedra C,Ceh J,Araya R

更新日期：2016-07-04 00:00:00

abstract：:Roseovarius mucosus Biebl et al. 2005 is a bacteriochlorophyll a-producing representative of the marine Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, which was isolated from the dinoflagellate Alexandrium ostenfeldii. The marine Roseobacter group was found to be abundant in the ocean and p...

journal_title：Standards in genomic sciences

authors： Riedel T,Spring S,Fiebig A,Scheuner C,Petersen J,Göker M,Klenk HP

更新日期：2015-03-19 00:00:00

abstract：:Strain M27-SA2 was isolated from the deep-sea salt-saturated anoxic lake Medee, which represents one of the most hostile extreme environments on our planet. On the basis of physiological studies and phylogenetic positioning this extremely halophilic euryarchaeon belongs to a novel genus 'Halanaeroarchaeum' within the ...

journal_title：Standards in genomic sciences

authors： Messina E,Sorokin DY,Kublanov IV,Toshchakov S,Lopatina A,Arcadi E,Smedile F,La Spada G,La Cono V,Yakimov MM

更新日期：2016-05-13 00:00:00

abstract：:Candidatus Arsenophonus lipopteni (Enterobacteriaceae, Gammaproteobacteria) is an obligate intracellular symbiont of the blood feeding deer ked, Lipoptena cervi (Diptera: Hippoboscidae). The bacteria reside in specialized cells derived from host gut epithelia (bacteriocytes) forming a compact symbiotic organ (bacterio...

journal_title：Standards in genomic sciences

authors： Nováková E,Hypša V,Nguyen P,Husník F,Darby AC

更新日期：2016-09-17 00:00:00

abstract：:Bacteria belonging to the genus Pectobacterium are responsible for soft rot disease on a wide range of cultivated crops. The "Pectobacterium peruviense" specie, recently proposed inside the Pectobacterium genus, gathers strains isolated from potato tubers cultivated in Peru at high altitude. Here we report the draft g...

journal_title：Standards in genomic sciences

authors： Faye P,Bertrand C,Pédron J,Barny MA

更新日期：2018-10-12 00:00:00

abstract：:Streptomyces hyaluromycini MB-PO13T (=NBRC 110483T = DSM 100105T) is type strain of the species, which produces a hyaluronidase inhibitor, hyaluromycin. Here, we report the draft genome sequence of this strain together with features of the organism and generation, annotation and analysis of the genome sequence. The 11...

journal_title：Standards in genomic sciences

authors： Harunari E,Komaki H,Ichikawa N,Hosoyama A,Kimura A,Hamada M,Igarashi Y

更新日期：2018-01-11 00:00:00

abstract：:Ferroglobus placidus belongs to the order Archaeoglobales within the archaeal phylum Euryarchaeota. Strain AEDII12DO is the type strain of the species and was isolated from a shallow marine hydrothermal system at Vulcano, Italy. It is a hyperthermophilic, anaerobic chemolithoautotroph, but it can also use a variety of...

journal_title：Standards in genomic sciences

authors： Anderson I,Risso C,Holmes D,Lucas S,Copeland A,Lapidus A,Cheng JF,Bruce D,Goodwin L,Pitluck S,Saunders E,Brettin T,Detter JC,Han C,Tapia R,Larimer F,Land M,Hauser L,Woyke T,Lovley D,Kyrpides N,Ivanova N

更新日期：2011-10-15 00:00:00

abstract：:Strain 3.5.1 was isolated from soils of the Republic of Tatarstan, Russia, on the basis of presence of a high phytate-degrading activity. Strains with such activities attract special interest because of its potential use as feed additives and natural manures. Strain 3.5.1 harbors a 99 % 16S rRNA nucleotide sequence si...

journal_title：Standards in genomic sciences

authors： Suleimanova AD,Toymentseva AA,Boulygina EA,Kazakov SV,Mardanova AM,Balaban NP,Sharipova MR

更新日期：2015-11-11 00:00:00

abstract：:Mycoplasma testudineum is one of the pathogens that can cause upper respiratory tract disease in desert tortoises, Gopherus agassizii. We sequenced the genome of M. testudineum BH29T (ATCC 700618T = MCCM 03231T), isolated from the upper respiratory tract of a Mojave desert tortoise with upper respiratory tract disease...

journal_title：Standards in genomic sciences

authors： Weitzman CL,Tillett RL,Sandmeier FC,Tracy CR,Alvarez-Ponce D

更新日期：2018-04-11 00:00:00

abstract：:The genus Porphyrobacter belongs to aerobic anoxygenic phototrophic bacteria cluster. Porphyrobacter neustonensis DSM 9434 was isolated from a eutrophic freshwater pond in Australia, and is able to synthesize Bacteriochlorophyll a as well as grow under aerobic conditions. It is the type species of the genus Porphyroba...

journal_title：Standards in genomic sciences

authors： Liu Q,Wu YH,Cheng H,Xu L,Wang CS,Xu XW

更新日期：2017-05-10 00:00:00

abstract：:'Treponema phagedenis' is considered to be a key agent in the pathogenesis of bovine digital dermatitis, an infectious foot condition of economic and animal welfare importance. We hereby report the draft sequence of 'T. phagedenis' strain V1. The draft genome assembly consists of 51 scaffolds comprising 3,129,551 bp a...

journal_title：Standards in genomic sciences

authors： Mushtaq M,Manzoor S,Pringle M,Rosander A,Bongcam-Rudloff E

更新日期：2015-09-21 00:00:00

abstract：:Pedobacter steynii DX4 was isolated from the soil of Tibetan Plateau and it can use crude oil as sole carbon and energy source at 15 °C. The genome of Pedobacter steynii DX4 has been sequenced and served as basis for analysis its metabolic mechanism. It is the first genome of crude oil degrading strain in Pedobacter g...

journal_title：Standards in genomic sciences

authors： Chang S,Zhang G,Chen X,Long H,Wang Y,Chen T,Liu G

更新日期：2017-07-27 00:00:00

abstract：:Nereida ignava strain 2SM4(T) (= CECT 5292(T) = DSM 16309(T) = CIP 108404(T) = CCUG 49433(T)) is a marine bacterium belonging to the Roseobacter group of the family Rhodobacteraceae within the class Alphaproteobacteria. The strain was isolated from sea water surrounding cultivated oysters 2-3 miles off the Mediterrane...

journal_title：Standards in genomic sciences

authors： Arahal DR,Pujalte MJ,Rodrigo-Torres L

更新日期：2016-02-29 00:00:00

abstract：:Thiobacillus thioparus DSM 505T is one of first two isolated strains of inorganic sulfur-oxidising Bacteria. The original strain of T. thioparus was lost almost 100 years ago and the working type strain is Culture CT (=DSM 505T = ATCC 8158T) isolated by Starkey in 1934 from agricultural soil at Rutgers University, New...

journal_title：Standards in genomic sciences

authors： Hutt LP,Huntemann M,Clum A,Pillay M,Palaniappan K,Varghese N,Mikhailova N,Stamatis D,Reddy T,Daum C,Shapiro N,Ivanova N,Kyrpides N,Woyke T,Boden R

更新日期：2017-01-19 00:00:00

abstract：:Weeksella virosa Holmes et al. 1987 is the sole member and type species of the genus Weeksella which belongs to the family Flavobacteriaceae of the phylum Bacteroidetes. Twenty-nine isolates, collected from clinical specimens provided the basis for the taxon description. While the species seems to be a saprophyte of t...

journal_title：Standards in genomic sciences

authors： Lang E,Teshima H,Lucas S,Lapidus A,Hammon N,Deshpande S,Nolan M,Cheng JF,Pitluck S,Liolios K,Pagani I,Mikhailova N,Ivanova N,Mavromatis K,Pati A,Tapia R,Han C,Goodwin L,Chen A,Palaniappan K,Land M,Hauser L,Cha

更新日期：2011-02-22 00:00:00

abstract：:Chryseobacterium bovis DSM 19482T (Hantsis-Zacharov et al., Int J Syst Evol Microbiol 58:1024-1028, 2008) is a Gram-negative, rod shaped, non-motile, facultative anaerobe, chemoorganotroph bacterium. C. bovis is a member of the Flavobacteriaceae, a family within the phylum Bacteroidetes. It was isolated when psychroto...

journal_title：Standards in genomic sciences

authors： Laviad-Shitrit S,Göker M,Huntemann M,Clum A,Pillay M,Palaniappan K,Varghese N,Mikhailova N,Stamatis D,Reddy TBK,Daum C,Shapiro N,Markowitz V,Ivanova N,Woyke T,Klenk HP,Kyrpides NC,Halpern M

更新日期：2017-05-08 00:00:00

abstract：:Escherichia coli is the most abundant facultative anaerobic bacteria in the gastro-intestinal tract of mammals but can be responsible for intestinal infection due to acquisition of virulence factors. Genomes of pathogenic E. coli strains are widely described whereas those of bovine commensal E. coli strains are very s...

journal_title：Standards in genomic sciences

authors： Segura A,Auffret P,Klopp C,Bertin Y,Forano E

更新日期：2017-10-10 00:00:00

abstract：:Polynucleobacter necessarius subsp. asymbioticus strain QLW-P1DMWA-1(T) is a planktonic freshwater bacterium affiliated with the family Burkholderiaceae (class Betaproteobacteria). This strain is of interest because it represents a subspecies with cosmopolitan and ubiquitous distribution in standing freshwater systems...

journal_title：Standards in genomic sciences

authors： Meincke L,Copeland A,Lapidus A,Lucas S,Berry KW,Del Rio TG,Hammon N,Dalin E,Tice H,Pitluck S,Richardson P,Bruce D,Goodwin L,Han C,Tapia R,Detter JC,Schmutz J,Brettin T,Larimer F,Land M,Hauser L,Kyrpides NC,Iva

更新日期：2012-03-19 00:00:00

abstract：:Halomonas zhanjiangensis Chen et al. 2009 is a member of the genus Halomonas, family Halomonadaceae, class Gammaproteobacteria. Representatives of the genus Halomonas are a group of halophilic bacteria often isolated from salty environments. The type strain H. zhanjiangensis JSM 078169(T) was isolated from a sea urchi...

journal_title：Standards in genomic sciences

authors： Zhou Y,Li R,Gao XY,Lapidus A,Han J,Haynes M,Lobos E,Huntemann M,Pati A,Ivanova NN,Rohde M,Mavromatis K,Tindall BJ,Markowitz V,Woyke T,Klenk HP,Kyrpides NC,Li WJ

更新日期：2014-04-11 00:00:00

abstract：:Mesorhizobium loti strain NZP2037 was isolated in 1961 in Palmerston North, New Zealand from a Lotus divaricatus root nodule. Compared to most other M. loti strains, it has a broad host range and is one of very few M. loti strains able to form effective nodules on the agriculturally important legume Lotus pedunculatus...

journal_title：Standards in genomic sciences

authors： Kelly S,Sullivan J,Ronson C,Tian R,Bräu L,Davenport K,Daligault H,Erkkila T,Goodwin L,Gu W,Munk C,Teshima H,Xu Y,Chain P,Woyke T,Liolios K,Pati A,Mavromatis K,Markowitz V,Ivanova N,Kyrpides N,Reeve W

更新日期：2014-12-08 00:00:00

abstract：:Flavobacterium seoulense strain EM1321(T) is the type strain of Flavobacterium seoulense sp. nov., a proposed novel species within the genus Flavobacterium. This strain is a Gram-reaction-negative, aerobic, rod-shaped bacterium isolated from stream water in Bukhansan National Park, Seoul. This organism is motile by gl...

journal_title：Standards in genomic sciences

authors： Shin SK,Goo H,Cho YJ,Kwon S,Yong D,Yi H

更新日期：2014-12-29 00:00:00

abstract：:Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the specie...

journal_title：Standards in genomic sciences

authors： Pati A,Sikorski J,Nolan M,Lapidus A,Copeland A,Glavina Del Rio T,Lucas S,Chen F,Tice H,Pitluck S,Cheng JF,Chertkov O,Brettin T,Han C,Detter JC,Kuske C,Bruce D,Goodwin L,Chain P,D'haeseleer P,Chen A,Palaniappan K

更新日期：2009-09-24 00:00:00

abstract：:Litoreibacter arenae Kim et al. 2012 is a member of the genomically well-characterized Rhodobacteraceae clade within the Roseobacter clade. Representatives of this clade are known to be metabolically versatile and involved in marine carbon-producing and biogeochemical processes. They form a physiologically heterogeneo...

journal_title：Standards in genomic sciences

authors： Riedel T,Fiebig A,Petersen J,Gronow S,Kyrpides NC,Göker M,Klenk HP

更新日期：2013-10-01 00:00:00

abstract：:Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because...

journal_title：Standards in genomic sciences

authors： Anderson IJ,DasSarma P,Lucas S,Copeland A,Lapidus A,Del Rio TG,Tice H,Dalin E,Bruce DC,Goodwin L,Pitluck S,Sims D,Brettin TS,Detter JC,Han CS,Larimer F,Hauser L,Land M,Ivanova N,Richardson P,Cavicchioli R,DasSar

更新日期：2016-09-10 00:00:00

abstract：:Flavihumibacter solisilvae 3-3(T) (= KACC 17917(T) = JCM 19891(T)) represents a type strain of the genus Flavihumibacter within the family Chitinophagaceae. This strain can use various sole carbon sources, making it applicable in industry and bioremediation. In this study, the draft genomic information of F. solisilva...

journal_title：Standards in genomic sciences

authors： Zhou G,Chen C,Jeon CO,Wang G,Li M

更新日期：2015-09-19 00:00:00

abstract：:Alistipes obesi sp. nov. strain ph8(T) is the type strain of A. obesi, a new species within the genus Alistipes. This strain, whose genome is described here, was isolated from the fecal flora of a 26-year-old woman suffering from morbid obesity. A. obesi is an obligately anaerobic rod. Here we describe the features of...

journal_title：Standards in genomic sciences

authors： Hugon P,Ramasamy D,Lagier JC,Rivet R,Couderc C,Raoult D,Fournier PE

更新日期：2013-02-25 00:00:00

abstract：:Rhizobium leguminosarum bv. trifolii SRDI943 (strain syn. V2-2) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Trifolium michelianum Savi cv. Paradana that had been grown in soil collected from a mixed pasture in Victoria, Australia. This isolate was found to have a...

journal_title：Standards in genomic sciences

authors： Reeve W,Drew E,Ballard R,Melino V,Tian R,De Meyer S,Brau L,Ninawi M,Daligault H,Davenport K,Erkkila T,Goodwin L,Gu W,Munk C,Teshima H,Xu Y,Chain P,Kyrpides N

更新日期：2013-12-15 00:00:00

abstract：:Spirosoma linguale Migula 1894 is the type species of the genus. S. linguale is a free-living and non-pathogenic organism, known for its peculiar ringlike and horseshoe-shaped cell morphology. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is only the th...

journal_title：Standards in genomic sciences

authors： Lail K,Sikorski J,Saunders E,Lapidus A,Glavina Del Rio T,Copeland A,Tice H,Cheng JF,Lucas S,Nolan M,Bruce D,Goodwin L,Pitluck S,Ivanova N,Mavromatis K,Ovchinnikova G,Pati A,Chen A,Palaniappan K,Land M,Hauser L,C

更新日期：2010-03-30 00:00:00

abstract：:Strain HIMB11 is a planktonic marine bacterium isolated from coastal seawater in Kaneohe Bay, Oahu, Hawaii belonging to the ubiquitous and versatile Roseobacter clade of the alphaproteobacterial family Rhodobacteraceae. Here we describe the preliminary characteristics of strain HIMB11, including annotation of the draf...

journal_title：Standards in genomic sciences

authors： Durham BP,Grote J,Whittaker KA,Bender SJ,Luo H,Grim SL,Brown JM,Casey JR,Dron A,Florez-Leiva L,Krupke A,Luria CM,Mine AH,Nigro OD,Pather S,Talarmin A,Wear EK,Weber TS,Wilson JM,Church MJ,DeLong EF,Karl DM,Stew

更新日期：2014-03-15 00:00:00