Counteraction ability of TMAO toward different denaturing agents.

Abstract:

:Differential scanning calorimetry measurements performed on RNase A in aqueous binary solutions containing different concentrations of urea, tetramethylurea, guanidinium chloride, and guanidinium thiocyanate, and in aqueous ternary solutions, containing the same denaturants plus 1 M trimethylamine N-oxide, TMAO, demonstrate that the latter has a general counteracting ability at pH 7.0, but not at pH 4.0. Experimental data rule out the idea that counteraction originates from direct interactions between TMAO molecules and denaturing agents. A rationalization is provided on the basis of a theoretical approach grounded on the solvent-excluded volume effect, whose magnitude depends on the density of aqueous solutions.

journal_name

Biopolymers

journal_title

Biopolymers

authors

Vigorita M,Cozzolino S,Oliva R,Graziano G,Del Vecchio P

doi

10.1002/bip.23104

subject

Has Abstract

pub_date

2018-08-01 00:00:00

pages

e23104

issue

10

eissn

0006-3525

issn

1097-0282

journal_volume

109

pub_type

杂志文章
  • Self-assembly of amphipathic β-sheet peptides: insights and applications.

    abstract::Amphipathic peptides composed of alternating polar and nonpolar residues have a strong tendency to self-assemble into one-dimensional, amyloid-like fibril structures. Fibrils derived from peptides of general (XZXZ)(n) sequence in which X is hydrophobic and Z is hydrophilic adopt a putative β-sheet bilayer. The bilayer...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.22058

    authors: Bowerman CJ,Nilsson BL

    更新日期:2012-01-01 00:00:00

  • An interplay between electrostatic and polar interactions in peptide hydrogels.

    abstract::Inherent chemical programmability available in peptide-based hydrogels has allowed diversity in the development of these materials for use in biomedical applications. Within the 20 natural amino acids, a range of chemical moieties are present. Here we used a mixing-induced self-assembly of two oppositely charged pepti...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22194

    authors: Joyner K,Taraban MB,Feng Y,Yu YB

    更新日期:2013-04-01 00:00:00

  • Beta-amino acid analogs of an insect neuropeptide feature potent bioactivity and resistance to peptidase hydrolysis.

    abstract::Insect neuropeptides of the insect kinin class share a common C-terminal pentapeptide sequence F(1)X(1)(2)X(2)(3)W(4)G(5)-NH(2) (X(2)(3) = P, S, A) and regulate such critical physiological processes as water balance and digestive enzyme release. Analogs of the insect kinin class, in which the critical residues of F(1)...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20638

    authors: Zubrzak P,Williams H,Coast GM,Isaac RE,Reyes-Rangel G,Juaristi E,Zabrocki J,Nachman RJ

    更新日期:2007-01-01 00:00:00

  • Raman signatures of ligand binding and allosteric conformation change in hexameric insulin.

    abstract::Hexameric insulin is an allosteric protein that undergoes transitions between three conformational states (T(6), T(3)R(3), and R(6)). These allosteric states are stabilized by the binding of ligands to the phenolic pockets and by the coordination of anions to the His B10 metal sites. Raman difference (RD) spectroscopy...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.1020

    authors: Ferrari D,Diers JR,Bocian DF,Kaarsholm NC,Dunn MF

    更新日期:2001-01-01 00:00:00

  • Evidence for the 3 10-helical structure of peptides based on antAib, a fluorophoric, anthracene-fused, 1-aminocyclopentane-1-carboxylic acid.

    abstract::Peptides based on 2-amino-2,3-dihydro-1H-cyclopenta[b]anthracene-2-carboxylic acid (antAib), a fluorescent, achiral, alpha-amino acid belonging to the class of C(i) (alpha)-->C(i) (alpha) cyclized, C(alpha,alpha)-disubstituted glycines, combined with L-Ala, up to the hexamer level, were synthesized by solution methods...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20841

    authors: Wright K,Lohier JF,Wakselman M,Mazaleyrat JP,Peggion C,Formaggio F,Toniolo C

    更新日期:2007-01-01 00:00:00

  • Challenges in mass spectrometry-based quantification of bioactive peptides: a case study exploring the neuropeptide Y family.

    abstract::The study of biologically active peptides is critical to the understanding of physiological pathways, especially those involved in the development of disease. Historically, the measurement of biologically active endogenous peptides has been undertaken by radioimmunoassay, a highly sensitive and robust technique that p...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22109

    authors: Xi L,Jin Y,Parker EA,Josh P,Jones A,Wijffels G,Colgrave ML

    更新日期:2012-01-01 00:00:00

  • Biological activity of peptide-conjugated polyion complex matrices consisting of alginate and chitosan.

    abstract::Peptide-conjugated polysaccharide matrices using bioactive laminin-derived peptides are useful biomaterials for tissue and cell engineering. Here, we demonstrate an easy handling preparation method for peptide-polysaccharide matrices using polyion complex with both alginate and chitosan. First, aldehyde-alginate was s...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22983

    authors: Fujimori C,Kumai J,Nakamura K,Gu Y,Katagiri F,Hozumi K,Kikkawa Y,Nomizu M

    更新日期:2017-01-01 00:00:00

  • Structure-based design of novel nonpeptide inhibitors of the Src SH2 domain:phosphotyrosine mimetics exploiting multifunctional group replacement chemistry.

    abstract::A series of novel nonpeptide inhibitors of the pp60(c-Src) (Src) SH2 domain is described that exploit multifunctional group replacement of the phenylphosphate moiety of phosphotyrosine (pTyr). Relative to an x-ray structure of citrate complexed to the pTyr binding site of the Src SH2 domain, these nonpeptide ligands i...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10600

    authors: Sundaramoorthi R,Kawahata N,Yang MG,Shakespeare WC,Metcalf CA 3rd,Wang Y,Merry T,Eyermann CJ,Bohacek RS,Narula S,Dalgarno DC,Sawyer TK

    更新日期:2003-01-01 00:00:00

  • Long-range mapping of DNA.

    abstract::Sequence-specific optical signals are used to establish long-range sequence order and identification for fragments hundreds of kilo bases in length. ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22332

    authors: Crothers DM

    更新日期:2013-12-01 00:00:00

  • Structure and chain conformation of beta-glucan isolated from Auricularia auricula-judae.

    abstract::From Auricularia auricula-judae, a water soluble beta-D-glucan, named as AAG, was isolated by extraction with 70% ethanol/water solution. Its chemical structure was analyzed by gas chromatography (GC), gas chromatography-mass spectrometry (GC-MS), matrix-assisted laser desorption /ionization (MALDI)-time of flight (TO...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20971

    authors: Ma Z,Wang J,Zhang L

    更新日期:2008-07-01 00:00:00

  • The interaction of ellipticine derivatives with nucleic acids studied by optical and 1H-nmr spectroscopy: effect of size of the heterocyclic ring system.

    abstract::The DNA interaction of derivatives of ellipticine with heterocyclic ring systems with three, four, or five rings and a dimethylaminoethyl side chain was studied. Optical spectroscopy of drug complexes with calf thymus DNA, poly[(dA-dT).(dA-dT)], or poly[(dG-dC).(dG-dC)] showed a 10 nm bathochromic shift of the light a...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360340503

    authors: Behravan G,Leijon M,Sehlstedt U,Nordén B,Vallberg H,Bergman J,Gräslund A

    更新日期:1994-05-01 00:00:00

  • The amide III vibrational circular dichroism band as a probe to detect conformational preferences of alanine dipeptide in water.

    abstract::The conformational preferences of blocked alanine dipeptide (ADP), Ac-Ala-NHMe, in aqueous solution were studied using vibrational circular dichroism (VCD) together with density functional theory (DFT) calculations. DFT calculations of three most representative conformations of ADP surrounded by six explicit water mol...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22460

    authors: Mirtič A,Merzel F,Grdadolnik J

    更新日期:2014-07-01 00:00:00

  • Equilibrium unfolding of the poly(glutamic acid)20 helix.

    abstract::The equilibrium structural ensemble of a 20-residue polyglutamic acid peptide (E(20)) was studied with FRET, circular dichroism, and molecular dynamics (MD) simulations. A FRET donor, o-aminobenzamide, and acceptor, 3-nitrotyrosine, were introduced at the N- and C-termini, respectively. Circular dichroism, steady stat...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20719

    authors: Finke JM,Jennings PA,Lee JC,Onuchic JN,Winkler JR

    更新日期:2007-06-15 00:00:00

  • De novo design of α,β-didehydrophenylalanine containing peptides: from models to applications.

    abstract::The de novo design of peptides and proteins has emerged as an approach for investigating protein structure and function. The success relies heavily on the ability to design relatively short peptides that can adopt stable secondary structures. To this end, substitution with α,β-dehydroamino acids, especially α,β-didehy...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.21561

    authors: Gupta M,Chauhan VS

    更新日期:2011-03-01 00:00:00

  • Recent advances in DNA catalysis.

    abstract::Studies of catalytically active DNA sequences have expanded considerably since the first artificial deoxyribozyme was identified in 1994. Nevertheless, the field is still quite young, and advances in both fundamental understanding and practical applications of deoxyribozymes are still developing. Deoxyribozymes that e...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.20813

    authors: Höbartner C,Silverman SK

    更新日期:2007-12-05 00:00:00

  • Theoretical CD studies of polypeptide helices: examination of important electronic and geometric factors.

    abstract::An improved model for calculating the CD of polypeptides has been developed. Excited state wavefunctions were derived from CNDO/S (complete neglect of differential overlap, spectroscopic) calculations on N-methylacetamide. Four discrete peptide-localized transitions were employed: pi 0 pi* (NV1), pi* + pi* (NV2), n pi...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360310511

    authors: Manning MC,Woody RW

    更新日期:1991-04-01 00:00:00

  • Nondestructive analyses of unsaturated fatty acid species in dietary oils by attenuated total reflectance with Fourier transform IR spectroscopy.

    abstract::The aim of this study was to develop a nondestructive method to quantitate relative amounts of n-3 and n-6 polyunsaturated fatty acid (PUFA) species in vegetable oils and oil seeds using Fourier transform IR spectroscopy (FTIR). The alkene Cbond;H stretching vibrations of unsaturated fatty acids in oils showed IR abso...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10505

    authors: Yoshida S,Yoshida H

    更新日期:2003-12-01 00:00:00

  • Beta-hairpin formation in aqueous solution and in the presence of trifluoroethanol: a (1)H and (13)C nuclear magnetic resonance conformational study of designed peptides.

    abstract::In order to check our current knowledge on the principles involved in beta-hairpin formation, we have modified the sequence of a 3:5 beta-hairpin forming peptide with two different purposes, first to increase the stability of the formed 3:5 beta-hairpin, and second to convert the 3:5 beta-hairpin into a 2:2 beta-hairp...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20345

    authors: Santiveri CM,Pantoja-Uceda D,Rico M,Jiménez MA

    更新日期:2005-10-15 00:00:00

  • Reactive oxygen species responsive nanoplatforms as smart drug delivery systems for gastrointestinal tract targeting.

    abstract::The pharmacological therapy for gastrointestinal (GI) diseases, such as inflammatory bowel diseases, continues to present challenges in targeting efficacy. The need for maximal local drug exposure at the inflamed regions of the GI tract has led research to focus on a disease-targeted drug delivery approach. Smart nano...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.23336

    authors: Bertoni S,Machness A,Tiboni M,Bártolo R,Santos HA

    更新日期:2020-01-01 00:00:00

  • Self-assembly of t-butyloxycarbonyl protected dipeptide methyl esters composed of leucine, isoleucine, and valine into highly organized structures from alcohol and aqueous alcohol mixtures.

    abstract::Short peptides composed of phenylalanine and sequences derived from amyloidogenic peptides have the ability to self-assemble to form nanostructures including hydrogels. The self-assembly of peptides composed of only hydrophobic amino acids and aliphatic protecting groups have not been investigated in detail. We have e...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.23033

    authors: Subbalakshmi C,Basak P,Nagaraj R

    更新日期:2017-11-01 00:00:00

  • General properties of silated hydroxyethylcellulose for potential biomedical applications.

    abstract::The general properties of hydroxyethylcellulose (HEC) grafted with 3-glycidoxypropyltrimethoxysilane (GPTMS) or 3-glycidoxypropylmethyldiethoxysilane (GPDMS) were studied for potential biomedical applications. The graft involved a Williamson reaction between the free hydroxyl function of HEC and the epoxy function of ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10053

    authors: Bourges X,Weiss P,Coudreuse A,Daculsi G,Legeay G

    更新日期:2002-04-05 00:00:00

  • The synthesis and study of side-chain lactam-bridged peptides.

    abstract::Side-chain lactam bridges linking amino acid residues that are spaced several residues apart in the linear sequence offer a convenient and flexible method for introducing conformational constraints into a peptide structure. The availability of a variety of selectively cleavable protecting groups for amines and carboxy...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.10203

    authors: Taylor JW

    更新日期:2002-01-01 00:00:00

  • Total chemical synthesis and oxidative folding of delta-conotoxin PVIA containing an N-terminal propeptide.

    abstract::Small disulfide-rich peptides are translated as larger precursors typically containing an N-terminal prepro sequence. In this study, we investigated the role of a propeptide in the oxidative folding of an extremely hydrophobic delta-conotoxin, PVIA. delta-Conotoxin PVIA (delta-PVIA) is a 29-amino acid neurotoxin stabi...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20211

    authors: Buczek P,Buczek O,Bulaj G

    更新日期:2005-01-01 00:00:00

  • The impact of interchain hydrogen bonding on β-hairpin stability is readily predicted by molecular dynamics simulation.

    abstract::Peptides are frequently used model systems for protein folding. They are also gaining increased importance as therapeutics. Here, the ability of molecular dynamics (MD) simulation for describing the structure and dynamics of β-hairpin peptides was investigated, with special attention given to the impact of a single in...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22671

    authors: Niebling S,Danelius E,Brath U,Westenhoff S,Erdélyi M

    更新日期:2015-11-01 00:00:00

  • Molecular dynamics study of a gelsolin-derived peptide binding to a lipid bilayer containing phosphatidylinositol 4,5-bisphosphate.

    abstract::Gelsolin is an actin-severing protein whose action is initiated by Ca(2+) and inhibited by binding to phosphorylated inositol lipid or phosphoinositides. The regions of gelsolin responsible for phosphoinositide binding are comprised of residues 150-169 (G150-169) and 135-142 (G135-142). The corresponding peptides poss...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10375

    authors: Liepiņa I,Czaplewski C,Janmey P,Liwo A

    更新日期:2003-01-01 00:00:00

  • Synthesis and characterization of new biodegradable hyaluronan alkyl derivatives.

    abstract::Several new biocompatible and degradable materials were prepared by chemical modification of sodium hyaluronate. The method of activation of hyaluronate by cyanogen bromide was used and subsequent reaction with nucleophile led to the formation of carbamate. This modification of hydroxyl groups of glycosaminoglycans pr...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20461

    authors: Mlcochová P,Bystrický S,Steiner B,Machová E,Koós M,Velebný V,Krcmár M

    更新日期:2006-05-01 00:00:00

  • Use of surface enhanced infrared absorption spectroscopy (SEIRA) to probe the functionality of a protein monolayer.

    abstract::We present a novel infrared method to investigate the functionality of a protein monolayer tethered to a metal substrate. The approach employs Surface Enhanced Infrared Absorption Spectroscopy (SEIRAS), which renders high surface sensitivity by enhancing the signal of the adsorbed protein by up to approximately 2 orde...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20501

    authors: Ataka K,Heberle J

    更新日期:2006-07-01 00:00:00

  • Conformational differences in protein disulfide linkages between normal hair and hair from subjects with trichothiodystrophy: a quantitative analysis by Raman microspectroscopy.

    abstract::Raman spectra of normal hair shafts and hair shafts from patients exhibiting trichothiodystrophy (TTD) were obtained using line focus laser illumination. Because hair from TTD patients has a significant decrease in the content of the sulfur-containing amino acids in comparison to normal hair, the 550-500 cm(-1) disulf...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20515

    authors: Schlücker S,Liang C,Strehle KR,DiGiovanna JJ,Kraemer KH,Levin IW

    更新日期:2006-08-15 00:00:00

  • CD spectral study of Dnp derivatives of amino acids and peptides for their configurational and conformational analysis.

    abstract::Rules relating the stereochemistry of N-Dnp (Dnp: 2,4-dinitrophenyl) derivatives of alpha-amino acids and peptides and the sign of the Cotton effects at the longest wavelength band (ca. 400 nm) are surveyed. Some new data and insights concerning the CD spectra of Dnp-alpha-amino acids are included: i.e., the spectra o...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20198

    authors: Kawai M,Nagai U,Inai Y,Yamamura H,Akasaka R,Takagi S,Miwa Y,Taga T

    更新日期:2005-01-01 00:00:00

  • Multimerized HIV-gp41-derived peptides as fusion inhibitors and vaccines.

    abstract::To date, several antigens based on the amino-terminal leucine/isoleucine heptad repeat (NHR) region of an HIV-1 envelope protein gp41 and fusion inhibitors based on the carboxy-terminal leucine/isoleucine heptad repeat (CHR) region of gp41 have been reported. We have developed a synthetic antigen targeting the membran...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.22782

    authors: Nomura W,Mizuguchi T,Tamamura H

    更新日期:2016-11-04 00:00:00