Biosynthesis of plant-derived ginsenoside Rh2 in yeast via repurposing a key promiscuous microbial enzyme.

Abstract:

:Ginsenoside Rh2 is a potential anticancer drug isolated from medicinal plant ginseng. Fermentative production of ginsenoside Rh2 in yeast has recently been investigated as an alternative strategy compared to extraction from plants. However, the titer was quite low due to low catalytic capability of the key ginseng glycosyltransferase in microorganisms. Herein, we have demonstrated high-level production of ginsenoside Rh2 in Saccharomyces cerevisiae via repurposing an inherently promiscuous glycosyltransferase, UGT51. The semi-rationally designed UGT51 presented an ~1800-fold enhanced catalytic efficiency (kcat/Km) for converting protopanaxadiol to ginsenoside Rh2 in vitro. Introducing the mutant glycosyltransferase gene into yeast increased Rh2 production from 0.0032 to 0.39mg/g dry cell weight (DCW). Further metabolic engineering, including preventing Rh2 degradation and increasing UDP-glucose precursor supply, increased Rh2 production to 2.90mg/g DCW, which was more than 900-fold higher than the starting strain. Finally, fed-batch fermentation in a 5-L bioreactor led to production of ~300mg/L Rh2, which was the highest titer reported.

journal_name

Metab Eng

journal_title

Metabolic engineering

authors

Zhuang Y,Yang GY,Chen X,Liu Q,Zhang X,Deng Z,Feng Y

doi

10.1016/j.ymben.2017.04.009

subject

Has Abstract

pub_date

2017-07-01 00:00:00

pages

25-32

eissn

1096-7176

issn

1096-7184

pii

S1096-7176(17)30066-6

journal_volume

42

pub_type

杂志文章
  • Functional expression of prokaryotic and eukaryotic genes in Escherichia coli for conversion of glucose to p-hydroxystyrene.

    abstract::The chemical monomer p-hydroxystyrene (pHS) is used for producing a number of important industrial polymers from petroleum-based feedstocks. In an alternative approach, the microbial production of pHS can be envisioned by linking together a number of different metabolic pathways, of which those based on using glucose ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2007.01.002

    authors: Qi WW,Vannelli T,Breinig S,Ben-Bassat A,Gatenby AA,Haynie SL,Sariaslani FS

    更新日期:2007-05-01 00:00:00

  • Probing metabolic pathways with isotopic tracers: insights from mammalian metabolic physiology.

    abstract::Metabolic Engineering offers an opportunity to forge a link between metabolic physiologists, working with mammalian systems and metabolic engineers. Many parallels may be drawn between the specific modification of metabolic networks to improve cellular properties and the analysis of metabolic networks in search of cau...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1016/j.ymben.2003.10.008

    authors: Kelleher JK

    更新日期:2004-01-01 00:00:00

  • Identification and engineering of the cytochalasin gene cluster from Aspergillus clavatus NRRL 1.

    abstract::Cytochalasins are a group of fungal secondary metabolites with diverse structures and bioactivities, including cytochalasin E produced by Aspergillus clavatus, which is a potent anti-angiogenic agent. Here, we report the identification and characterization of the cytochalasin gene cluster from A. clavatus NRRL 1. As a...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2011.09.008

    authors: Qiao K,Chooi YH,Tang Y

    更新日期:2011-11-01 00:00:00

  • Improving recombinant bone morphogenetic protein-4 (BMP-4) production by autoregulatory feedback loop removal using BMP receptor-knockout CHO cell lines.

    abstract::A Chinese hamster ovary (CHO) cell line producing recombinant human bone morphogenetic protein-4 (rhBMP-4) (CHO-BMP-4), which expresses essential components of BMP signal transduction, underwent autocrine BMP-4 signaling. RNA seq analysis on CHO host cells (DG44) treated with rhBMP-4 (20 µg/mL) suggested that rhBMP-4 ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2018.11.003

    authors: Kim CL,Lee GM

    更新日期:2019-03-01 00:00:00

  • 13C metabolic flux analysis of microbial and mammalian systems is enhanced with GC-MS measurements of glycogen and RNA labeling.

    abstract::13C metabolic flux analysis (13C-MFA) is a widely used tool for quantitative analysis of microbial and mammalian metabolism. Until now, 13C-MFA was based mainly on measurements of isotopic labeling of amino acids derived from hydrolyzed biomass proteins and isotopic labeling of extracted intracellular metabolites. Her...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2016.06.007

    authors: Long CP,Au J,Gonzalez JE,Antoniewicz MR

    更新日期:2016-11-01 00:00:00

  • Metabolic transistor strategy for controlling electron transfer chain activity in Escherichia coli.

    abstract::A novel strategy to finely control a large metabolic flux by using a "metabolic transistor" approach was established. In this approach a small change in the level or availability of an essential component for the process is controlled by adding a competitive reaction that affects a precursor or an intermediate in its ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2015.01.002

    authors: Wu H,Tuli L,Bennett GN,San KY

    更新日期:2015-03-01 00:00:00

  • Systematic identification and elimination of flux bottlenecks in the aldehyde production pathway of Synechococcus elongatus PCC 7942.

    abstract::Isotopically nonstationary metabolic flux analysis (INST-MFA) provides a versatile platform to quantitatively assess in vivo metabolic activities of autotrophic systems. By applying INST-MFA to recombinant aldehyde-producing cyanobacteria, we identified metabolic alterations that correlated with increased strain perfo...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2020.03.007

    authors: Cheah YE,Xu Y,Sacco SA,Babele PK,Zheng AO,Johnson CH,Young JD

    更新日期:2020-07-01 00:00:00

  • A novel reporter system for bacterial and mammalian cells based on the non-ribosomal peptide indigoidine.

    abstract::The biosynthesis of non-ribosomal peptides, many of which have pharmaceutical activities, is an evolutionary privilege of microorganisms. Capitalizing on the universal set of the Streptomyces lavendulae non-ribosomal peptide synthase BpsA and the Streptomyces verticillus 4'-phosphopantetheinyl transferase Svp, we have...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2012.04.002

    authors: Müller M,Ausländer S,Ausländer D,Kemmer C,Fussenegger M

    更新日期:2012-07-01 00:00:00

  • Consolidated conversion of protein waste into biofuels and ammonia using Bacillus subtilis.

    abstract::The non-recyclable use of nitrogen fertilizers in microbial production of fuels and chemicals remains environmentally detrimental. Conversion of protein wastes into biofuels and ammonia by engineering nitrogen flux in Escherichia coli has been demonstrated as a method to reclaim reduced-nitrogen and curb its environme...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2014.02.007

    authors: Choi KY,Wernick DG,Tat CA,Liao JC

    更新日期:2014-05-01 00:00:00

  • Complete genome sequence, metabolic model construction and phenotypic characterization of Geobacillus LC300, an extremely thermophilic, fast growing, xylose-utilizing bacterium.

    abstract::We have isolated a new extremely thermophilic fast-growing Geobacillus strain that can efficiently utilize xylose, glucose, mannose and galactose for cell growth. When grown aerobically at 72 °C, Geobacillus LC300 has a growth rate of 2.15 h(-1) on glucose and 1.52 h(-1) on xylose (doubling time less than 30 min). The...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2015.09.009

    authors: Cordova LT,Long CP,Venkataramanan KP,Antoniewicz MR

    更新日期:2015-11-01 00:00:00

  • Effect of puuC overexpression and nitrate addition on glycerol metabolism and anaerobic 3-hydroxypropionic acid production in recombinant Klebsiella pneumoniae ΔglpKΔdhaT.

    abstract::3-Hydroxypropionic acid (3-HP), an industrially important platform chemical, is used as a precursor during the production of many commercially important chemicals. Recently, recombinant strains of K. pneumoniae overexpressing an NAD(+)-dependent γ-glutamyl-γ-aminobutyraldehyde dehydrogenase (PuuC) enzyme of K. pneumon...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2012.09.004

    authors: Ashok S,Mohan Raj S,Ko Y,Sankaranarayanan M,Zhou S,Kumar V,Park S

    更新日期:2013-01-01 00:00:00

  • Escherichia coli responds with a rapid and large change in growth rate upon a shift from glucose-limited to glucose-excess conditions.

    abstract::Glucose pulse experiments at seconds time scale resolution were performed in aerobic glucose-limited Escherichia coli chemostat cultures. The dynamic responses of oxygen-uptake and growth rate at seconds time scale were determined using a new method based on the dynamic liquid-phase mass balance for oxygen and the pse...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2011.03.003

    authors: Taymaz-Nikerel H,van Gulik WM,Heijnen JJ

    更新日期:2011-05-01 00:00:00

  • Manipulating respiratory levels in Escherichia coli for aerobic formation of reduced chemical products.

    abstract::Optimizing the productivity of bioengineered strains requires balancing ATP generation and carbon atom conservation through fine-tuning cell respiration and metabolism. Traditional approaches manipulate cell respiration by altering air feeding, which are technically difficult especially in large bioreactors. An approa...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2011.09.006

    authors: Zhu J,Sánchez A,Bennett GN,San KY

    更新日期:2011-11-01 00:00:00

  • Mapping photoautotrophic metabolism with isotopically nonstationary (13)C flux analysis.

    abstract::Understanding in vivo regulation of photoautotrophic metabolism is important for identifying strategies to improve photosynthetic efficiency or re-route carbon fluxes to desirable end products. We have developed an approach to reconstruct comprehensive flux maps of photoautotrophic metabolism by computational analysis...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2011.08.002

    authors: Young JD,Shastri AA,Stephanopoulos G,Morgan JA

    更新日期:2011-11-01 00:00:00

  • Quantitative prediction of genome-wide resource allocation in bacteria.

    abstract::Predicting resource allocation between cell processes is the primary step towards decoding the evolutionary constraints governing bacterial growth under various conditions. Quantitative prediction at genome-scale remains a computational challenge as current methods are limited by the tractability of the problem or by ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2015.10.003

    authors: Goelzer A,Muntel J,Chubukov V,Jules M,Prestel E,Nölker R,Mariadassou M,Aymerich S,Hecker M,Noirot P,Becher D,Fromion V

    更新日期:2015-11-01 00:00:00

  • High-yield whole cell biosynthesis of Nylon 12 monomer with self-sufficient supply of multiple cofactors.

    abstract::Biosynthesis of Nylon 12 monomer using dodecanoic acid (DDA) or its esters as the renewable feedstock typically involves ω-hydroxylation, oxidation and ω-amination. The dependence of hydroxylation and oxidation-catalyzing enzymes on redox cofactors, and the requirement of L-alanine as the co-substrate and pyridoxal 5'...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2020.09.006

    authors: Ge J,Yang X,Yu H,Ye L

    更新日期:2020-11-01 00:00:00

  • Cell-free styrene biosynthesis at high titers.

    abstract::Styrene is an important petroleum-derived molecule that is polymerized to make versatile plastics, including disposable silverware and foamed packaging materials. Finding more sustainable methods, such as biosynthesis, for producing styrene is essential due to the increasing severity of climate change as well as the l...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2020.05.009

    authors: Grubbe WS,Rasor BJ,Krüger A,Jewett MC,Karim AS

    更新日期:2020-09-01 00:00:00

  • Metabolic engineering of ammonium release for nitrogen-fixing multispecies microbial cell-factories.

    abstract::The biological nitrogen fixation carried out by some Bacteria and Archaea is one of the most attractive alternatives to synthetic nitrogen fertilizers. In this study we compared the effect of controlling the maximum activation state of the Azotobacter vinelandii glutamine synthase by a point mutation at the active sit...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2014.03.002

    authors: Ortiz-Marquez JC,Do Nascimento M,Curatti L

    更新日期:2014-05-01 00:00:00

  • Precise control of lycopene production to enable a fast-responding, minimal-equipment biosensor.

    abstract::Pigmented metabolites have great potential for use in biosensors that target low-resource areas, since sensor output can be interpreted without any equipment. However, full repression of pigment production when undesired is challenging, as even small amounts of enzyme can catalyze the production of large, visible amou...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2017.07.004

    authors: McNerney MP,Styczynski MP

    更新日期:2017-09-01 00:00:00

  • A method for analysis and design of metabolism using metabolomics data and kinetic models: Application on lipidomics using a novel kinetic model of sphingolipid metabolism.

    abstract::We present a model-based method, designated Inverse Metabolic Control Analysis (IMCA), which can be used in conjunction with classical Metabolic Control Analysis for the analysis and design of cellular metabolism. We demonstrate the capabilities of the method by first developing a comprehensively curated kinetic model...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2016.04.002

    authors: Savoglidis G,da Silveira Dos Santos AX,Riezman I,Angelino P,Riezman H,Hatzimanikatis V

    更新日期:2016-09-01 00:00:00

  • Improvement of 1,3-propanediol production using an engineered cyanobacterium, Synechococcus elongatus by optimization of the gene expression level of a synthetic metabolic pathway and production conditions.

    abstract::The introduction of a synthetic metabolic pathway consisting of multiple genes derived from various organisms enables cyanobacteria to directly produce valuable chemicals from carbon dioxide. We previously constructed a synthetic metabolic pathway composed of genes from Escherichia coli, Saccharomyces cerevisiae, and ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2016.12.001

    authors: Hirokawa Y,Maki Y,Hanai T

    更新日期:2017-01-01 00:00:00

  • Metabolic engineering of aerobic succinate production systems in Escherichia coli to improve process productivity and achieve the maximum theoretical succinate yield.

    abstract::The potential to produce succinate aerobically in Escherichia coli would offer great advantages over anaerobic fermentation in terms of faster biomass generation, carbon throughput, and product formation. Genetic manipulations were performed on two aerobic succinate production systems to increase their succinate yield...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2004.10.003

    authors: Lin H,Bennett GN,San KY

    更新日期:2005-03-01 00:00:00

  • Review of methods to probe single cell metabolism and bioenergetics.

    abstract::Single cell investigations have enabled unexpected discoveries, such as the existence of biological noise and phenotypic switching in infection, metabolism and treatment. Herein, we review methods that enable such single cell investigations specific to metabolism and bioenergetics. Firstly, we discuss how to isolate a...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1016/j.ymben.2014.09.007

    authors: Vasdekis AE,Stephanopoulos G

    更新日期:2015-01-01 00:00:00

  • Metabolomics for high-resolution monitoring of the cellular physiological state in cell culture engineering.

    abstract::Cell culture engineering has to-date used transcriptomic, proteomic, and metabolic flux analyses, attempting to resolve significant questions regarding cell culture performance. Despite the foreseen positive impact, the metabolomic analytical platform has not yet been vastly deployed. Presently, there is no published ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2009.11.001

    authors: Chrysanthopoulos PK,Goudar CT,Klapa MI

    更新日期:2010-05-01 00:00:00

  • Reversal of β-oxidative pathways for the microbial production of chemicals and polymer building blocks.

    abstract::β-Oxidation is the ubiquitous metabolic strategy to break down fatty acids. In the course of this four-step process, two carbon atoms are liberated per cycle from the fatty acid chain in the form of acetyl-CoA. However, typical β-oxidative strategies are not restricted to monocarboxylic (fatty) acid degradation only, ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1016/j.ymben.2017.05.004

    authors: Kallscheuer N,Polen T,Bott M,Marienhagen J

    更新日期:2017-07-01 00:00:00

  • Machine learning for metabolic engineering: A review.

    abstract::Machine learning provides researchers a unique opportunity to make metabolic engineering more predictable. In this review, we offer an introduction to this discipline in terms that are relatable to metabolic engineers, as well as providing in-depth illustrative examples leveraging omics data and improving production. ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章,评审

    doi:10.1016/j.ymben.2020.10.005

    authors: Lawson CE,Martí JM,Radivojevic T,Jonnalagadda SVR,Gentz R,Hillson NJ,Peisert S,Kim J,Simmons BA,Petzold CJ,Singer SW,Mukhopadhyay A,Tanjore D,Dunn JG,Garcia Martin H

    更新日期:2021-01-01 00:00:00

  • Introduction of a bacterial acetyl-CoA synthesis pathway improves lactic acid production in Saccharomyces cerevisiae.

    abstract::Acid-tolerant Saccharomyces cerevisiae was engineered to produce lactic acid by expressing heterologous lactate dehydrogenase (LDH) genes, while attenuating several key pathway genes, including glycerol-3-phosphate dehydrogenase1 (GPD1) and cytochrome-c oxidoreductase2 (CYB2). In order to increase the yield of lactic ...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2015.09.006

    authors: Song JY,Park JS,Kang CD,Cho HY,Yang D,Lee S,Cho KM

    更新日期:2016-05-01 00:00:00

  • Ensemble modeling for strain development of L-lysine-producing Escherichia coli.

    abstract::One of the main strategies to improve the production of relevant metabolites has been the manipulation of single or multiple key genes in the metabolic pathways. This kind of strategy requires several rounds of experiments to identify enzymes that impact either yield or productivity. The use of mathematical tools to f...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2009.04.002

    authors: Contador CA,Rizk ML,Asenjo JA,Liao JC

    更新日期:2009-07-01 00:00:00

  • Metabolic engineering of β-oxidation in Penicillium chrysogenum for improved semi-synthetic cephalosporin biosynthesis.

    abstract::Industrial production of semi-synthetic cephalosporins by Penicillium chrysogenum requires supplementation of the growth media with the side-chain precursor adipic acid. In glucose-limited chemostat cultures of P. chrysogenum, up to 88% of the consumed adipic acid was not recovered in cephalosporin-related products, b...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2012.02.004

    authors: Veiga T,Gombert AK,Landes N,Verhoeven MD,Kiel JA,Krikken AM,Nijland JG,Touw H,Luttik MA,van der Toorn JC,Driessen AJ,Bovenberg RA,van den Berg MA,van der Klei IJ,Pronk JT,Daran JM

    更新日期:2012-07-01 00:00:00

  • A genomic-library based discovery of a novel, possibly synthetic, acid-tolerance mechanism in Clostridium acetobutylicum involving non-coding RNAs and ribosomal RNA processing.

    abstract::We generated a genomic library from sheared Clostridium acetobutylicum ATCC 824 DNA, whereby inserts can be expressed in both directions from the thiolase promoter, P(thl). Serial transfer of library-bearing C. acetobutylicum cultures exposed to increasing butyrate concentrations enriched for inserts containing fragme...

    journal_title:Metabolic engineering

    pub_type: 杂志文章

    doi:10.1016/j.ymben.2009.12.004

    authors: Borden JR,Jones SW,Indurthi D,Chen Y,Papoutsakis ET

    更新日期:2010-05-01 00:00:00