Proteomic biomarkers for psoriasis and psoriasis arthritis.

Abstract:

UNLABELLED:Although several new biomarkers have been recently proposed for psoriasis (Ps) and psoriasis arthritis (PsA), nothing is known about their diagnostic sensitivity and specificity, and their routine use. We therefore searched in-depth for new biomarker candidates using a biobank with EDTA-plasma from 158 individuals, patients and healthy controls. Samples from 6 selected pairs (patients against healthy controls) were searched proteomically using a workflow of extensive and precise design that is highly comprehensive. Subsequent verification was performed using ELISA and the entire biobank. By proteomic methods, 208 altered proteins were identified. Of these, 15 biomarker candidates were selected for verification. Of these 15, 4 individual parameters and 11 combinations significantly discriminated between patient and control groups. These individual parameters were Zn-α2-glycoprotein, complement C3, polymeric immunoglobulin receptor, and plasma kallikrein. Significant discrimination was obtained by combinations of 2 or 3 parameters. One combination seemed suitable for diagnosing PsA. Moreover, several candidates desmoplakin, complement C3, polymeric immunoglobulin receptor, and cytokeratin 17, correlated with PASI in all patients. This first comprehensive proteomic study on non-depleted plasma identified several biomarker candidates that have not been described before as well as some known from previous studies. BIOLOGICAL SIGNIFICANCE:Our non-gel proteomic analysis is based on the highly comprehensive and significantly optimized chromatographic protein pre-fractionation. The method allows a biomarker search in non-depleted plasma. The subsequent verification by ELISA identifies several biomarker-candidates for the unbiased diagnosis of psoriasis and psoriasis arthritis. Four of the identified candidate markers might be used individually. Combinations of several parameters improve the diagnostic sensitivity and specificity. The still not validated candidates form a reserve for further evaluation. Moreover, mass spectrometric data uncover several biomarker-candidates which show diverse protein species of the same protein with opposing changes in the same sample.

journal_name

J Proteomics

journal_title

Journal of proteomics

authors

Reindl J,Pesek J,Krüger T,Wendler S,Nemitz S,Muckova P,Büchler R,Opitz S,Krieg N,Norgauer J,Rhode H

doi

10.1016/j.jprot.2016.03.040

subject

Has Abstract

pub_date

2016-05-17 00:00:00

pages

55-61

eissn

1874-3919

issn

1876-7737

pii

S1874-3919(16)30105-1

journal_volume

140

pub_type

杂志文章
  • Qualitative and quantitative peptidomic and proteomic approaches to phenotyping chicken semen.

    abstract:UNLABELLED:Understanding of the avian male gamete biology is essential to improve the conservation of genetic resources and performance in farming. In this study, the chicken semen peptidome/proteome and the molecular phenotype related to sperm quality were investigated. Spermatozoa (SPZ) and corresponding seminal plas...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.07.024

    authors: Labas V,Grasseau I,Cahier K,Gargaros A,Harichaux G,Teixeira-Gomes AP,Alves S,Bourin M,Gérard N,Blesbois E

    更新日期:2015-01-01 00:00:00

  • The influence of temperature on plant development in a vernalization-requiring winter wheat: A 2-DE based proteomic investigation.

    abstract::In this work, proteomics was used to study the influence of both optimal and low temperatures on growth and development in a vernalization-requiring winter wheat (Triticum aestivum L. cv Cheyenne) after prolonged times of treatment. For this purpose, plants were grown at optimal temperature (20°C) for 14 days (zero po...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.02.005

    authors: Rinalducci S,Egidi MG,Mahfoozi S,Godehkahriz SJ,Zolla L

    更新日期:2011-05-01 00:00:00

  • Combined proteomics and transcriptomics identifies sting-related toxins of jellyfish Cyanea nozakii.

    abstract:UNLABELLED:Jellyfish sting has become a worldwide issue of critical concern to human health and safety in coastal areas in recent decades. Cyanea nozakii is one of the dominant blooming species and dangerous stingers in China. However, it remains unclear how many and what types of toxins are present in the venom. So, w...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.07.023

    authors: Li R,Yu H,Yue Y,Liu S,Xing R,Chen X,Li P

    更新日期:2016-10-04 00:00:00

  • Proteomics fingerprints of systemic mechanisms of adaptation to bile in Lactobacillus fermentum.

    abstract::Lactobacillus fermentum is a natural resident of the human GIT and is used as a probiotic. A unique property of L. fermentum is its ability to tolerate, colonize, and survive in the harsh conditions of bile, which facilitates transient colonization of the host colon. In the current study, we investigated the key mecha...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103600

    authors: Ali SA,Singh P,Tomar SK,Mohanty AK,Behare P

    更新日期:2020-02-20 00:00:00

  • Cross-talk between α7 nAchR and NMDAR revealed by protein profiling.

    abstract::Functional regulation of NMDA receptor (NMDAR) by the activation of α7 nicotinic acetylcholine receptor (α7nAChR) has been reported, although the molecular signaling pathway underlying this process remains largely unknown. We employed a label-free quantitative proteomics approach to identify potential intracellular mo...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.10.018

    authors: Zhang H,Li T,Li S,Liu F

    更新日期:2016-01-10 00:00:00

  • Earwax: A neglected body secretion or a step ahead in clinical diagnosis? A pilot study.

    abstract::This work combines the advantages of volatile metabolites profiling as a young growing research field with a non-invasive sampling technique using earwax "a neglected body secretion" for detection and monitoring of biomarkers for diabetes mellitus (types 1 and 2). Earwax samples were collected from 26 diabetic patient...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2017.03.005

    authors: Shokry E,de Oliveira AE,Avelino MAG,de Deus MM,Filho NRA

    更新日期:2017-04-21 00:00:00

  • Titanium dioxide as chemo-affinity chromatographic sorbent of biomolecular compounds--applications in acidic modification-specific proteomics.

    abstract::Characterization of the biomolecules involved in molecular processes occurring in biological systems such as the human cell remains central to biology, biotechnology, and medicine. One of the preferred methods of selectively purifying specific classes of biomolecules from complex biological matrices for further charac...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2011.07.024

    authors: Engholm-Keller K,Larsen MR

    更新日期:2011-12-21 00:00:00

  • Glycoproteome in silkworm Bombyx mori and alteration by BmCPV infection.

    abstract::The biological functions of protein glycosylation have been increasingly recognized but not yet been very well understood, especially in lower organisms. Silkworm as a model lepidopteran insect and important economic insect, has been widely studied in life science, however, the current knowledge on the glycosylation s...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103802

    authors: Zhu F,Li D,Song D,Huo S,Ma S,Lü P,Liu X,Yao Q,Chen K

    更新日期:2020-06-30 00:00:00

  • Urine metabolomic analysis in clear cell and papillary renal cell carcinoma: A pilot study.

    abstract::Renal cell carcinoma (RCC) is one of the most lethal type of tumors and is twice more frequent in men than in women. Initial symptoms are unspecific and belated thus increasing mortality. Moreover, current diagnostic and monitoring tools are harmful for the patient and unspecific in low-grade tumors. Therefore, novel ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103723

    authors: Oto J,Fernández-Pardo Á,Roca M,Plana E,Solmoirago MJ,Sánchez-González JV,Vera-Donoso CD,Martínez-Sarmiento M,España F,Navarro S,Medina P

    更新日期:2020-04-30 00:00:00

  • Fermentation and proteome profiles of Lactobacillus plantarum strains during growth under food-like conditions.

    abstract:UNLABELLED:This study aimed at investigating the proteomic adaptation of Lactobacillus plantarum strains. Cultivation of L. plantarum strains under food-like conditions (wheat flour hydrolyzed, whey milk, tomato juice) affected some metabolic traits (e.g., consumption of carbohydrates and synthesis of organic acids) co...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.11.003

    authors: Siragusa S,De Angelis M,Calasso M,Campanella D,Minervini F,Di Cagno R,Gobbetti M

    更新日期:2014-01-16 00:00:00

  • Exosomes derived from calcium oxalate-exposed macrophages enhance IL-8 production from renal cells, neutrophil migration and crystal invasion through extracellular matrix.

    abstract::Deposition of calcium oxalate (CaOx) crystals in renal interstitium is one of the key factors that cause progressive inflammation in kidney stone disease. Macrophages are responsible for elimination of these crystals but their roles to worsen inflammatory process remain under-investigated. This study thus aimed to def...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.06.015

    authors: Singhto N,Thongboonkerd V

    更新日期:2018-08-15 00:00:00

  • Characterization of the gila monster (Heloderma suspectum suspectum) venom proteome.

    abstract:UNLABELLED:The archetypical venomous lizard species are the helodermatids, the gila monsters (Heloderma suspectum) and the beaded lizards (Heloderma horridum). In the present study, the gila monster venom proteome was characterized using 2D-gel electrophoresis and tandem mass spectrometry-based de novo peptide sequenci...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.01.004

    authors: Sanggaard KW,Dyrlund TF,Thomsen LR,Nielsen TA,Brøndum L,Wang T,Thøgersen IB,Enghild JJ

    更新日期:2015-03-18 00:00:00

  • Proteomics study of open biopsy samples identifies peroxiredoxin 2 as a predictive biomarker of response to induction chemotherapy in osteosarcoma.

    abstract:UNLABELLED:We attempted to identify biomarkers that would predict responsiveness of osteosarcoma (OS) to induction chemotherapy. Tumor tissues obtained by open biopsy before induction chemotherapy were investigated. On the basis of histological observations at the time of surgery and the Huvos grading system, 7 patient...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.07.022

    authors: Kubota D,Mukaihara K,Yoshida A,Tsuda H,Kawai A,Kondo T

    更新日期:2013-10-08 00:00:00

  • Partially isobaric peptide termini labeling assisted proteome quantitation based on MS and MS/MS signals.

    abstract:UNLABELLED:Isotopic labeling and isobaric labeling are two kinds of the typical quantification method that have been widely used in proteomics analysis. Herein, a novel quantitative strategy, partially isobaric peptide termini labeling (PITL), was developed to overcome the drawbacks of each above-mentioned labeling str...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.11.014

    authors: Zhang S,Wu Q,Shan Y,Zhou Y,Zhang L,Zhang Y

    更新日期:2015-01-30 00:00:00

  • Integrated physiological and proteomic analysis reveals underlying response and defense mechanisms of Brachypodium distachyon seedling leaves under osmotic stress, cadmium and their combined stresses.

    abstract::Drought stress, a major abiotic stress, commonly occurs in metal-contaminated environments and affects crop growth and yield. In this study, we performed the first integrated phenotypic, physiological, and proteomic analysis of Brachypodium distachyon L. seedling leaves under polyethylene glycol (PEG) mock osmotic str...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.09.015

    authors: Cheng ZW,Chen ZY,Yan X,Bian YW,Deng X,Yan YM

    更新日期:2018-01-06 00:00:00

  • The Drosophila melanogaster sperm proteome-II (DmSP-II).

    abstract::Advances in mass spectrometry technology, high-throughput proteomics and genome annotations have resulted in significant increases in our molecular understanding of sperm composition. Using improved separation and detection methods and an updated genome annotation, a re-analysis of the Drosophila melanogaster sperm pr...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2010.09.002

    authors: Wasbrough ER,Dorus S,Hester S,Howard-Murkin J,Lilley K,Wilkin E,Polpitiya A,Petritis K,Karr TL

    更新日期:2010-10-10 00:00:00

  • Identification and profiling of salinity stress-responsive proteins in Sorghum bicolor seedlings.

    abstract::Sorghum bicolor, a drought tolerant cereal crop, is not only an important food source in the semi arid/arid regions but also a potential model for studying and gaining a better understanding of the molecular mechanisms of drought and salt stress tolerance in cereals. In this study, seeds of a sweet sorghum variety, MN...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.05.038

    authors: Ngara R,Ndimba R,Borch-Jensen J,Jensen ON,Ndimba B

    更新日期:2012-07-16 00:00:00

  • Structural characterisation of medically relevant protein assemblies by integrating mass spectrometry with computational modelling.

    abstract::Structural mass spectrometry with its various techniques is a powerful tool for the structural elucidation of medically relevant protein assemblies. It delivers information on the composition, stoichiometries, interactions and topologies of these assemblies. Most importantly it can deal with heterogeneous mixtures and...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2017.04.019

    authors: Politis A,Schmidt C

    更新日期:2018-03-20 00:00:00

  • Quantitative proteomics of the yeast Hsp70/Hsp90 interactomes during DNA damage reveal chaperone-dependent regulation of ribonucleotide reductase.

    abstract:UNLABELLED:The highly conserved molecular chaperones Hsp90 and Hsp70 are indispensible for folding and maturation of a significant fraction of the proteome, including many proteins involved in signal transduction and stress response. To examine the dynamics of chaperone-client interactions after DNA damage, we applied ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.09.028

    authors: Truman AW,Kristjansdottir K,Wolfgeher D,Ricco N,Mayampurath A,Volchenboum SL,Clotet J,Kron SJ

    更新日期:2015-01-01 00:00:00

  • Comparative proteomic analysis reveals that caspase-1 and serine protease may be involved in silkworm resistance to Bombyx mori nuclear polyhedrosis virus.

    abstract::The silkworm Bombyx mori is of great economic value. The B. mori nuclear polyhedrosis virus (BmNPV) is one of the most common and severe pathogens for silkworm. Although certain immune mechanisms exist in silkworms, most silkworms are still susceptible to BmNPV infection. Interestingly, BmNPV infection resistance in s...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.04.015

    authors: Qin L,Xia H,Shi H,Zhou Y,Chen L,Yao Q,Liu X,Feng F,Yuan Y,Chen K

    更新日期:2012-06-27 00:00:00

  • Proteomic analysis of healthy and atretic porcine follicular granulosa cells.

    abstract::Follicular atresia is initiated with the apoptosis of granulosa cells (GCs) after birth in mammals. The molecular mechanisms underlying GC apoptosis during follicular selection are unclear at present. The objective of this study is to identify the proteins and pathways that may be involved in porcine follicular atresi...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.104027

    authors: Shan X,Yu T,Yan X,Wu J,Fan Y,Guan X,Fang F,Lin Y,Zhang Y,Li Y,Liu Y

    更新日期:2021-02-10 00:00:00

  • Secretome proteomics for discovery of cancer biomarkers.

    abstract::"Secretome" is referred to as the rich, complex set of molecules secreted from living cells. In a less strict definition frequently followed in "secretome" studies, the term also includes molecules shed from the surface of living cells. Proteins of secretome (will be referred to as secreted) play a key role in cell si...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2010.07.001

    authors: Makridakis M,Vlahou A

    更新日期:2010-11-10 00:00:00

  • Integrated physiological and chloroplast proteome analysis of wheat seedling leaves under salt and osmotic stresses.

    abstract::In this study, we performed an integrated physiological and chloroplast proteome analysis of wheat seedling leaves under salt and osmotic stresses by label-free based quantitative proteomic approach. Both salt and osmotic stresses significantly increased the levels of abscisic acid and methyl jasmonate and led to dama...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.104097

    authors: Zhu D,Luo F,Zou R,Liu J,Yan Y

    更新日期:2021-03-15 00:00:00

  • Proteogenomic insight into the basis of the insecticide tolerance/resistance of the pollen beetle Brassicogethes (Meligethes) aeneus.

    abstract::The pollen beetle is a major pest of oilseed rape. Although various resistance mechanisms have been identified, such as kdr (mutation in the sodium channel) and metabolic resistance (CYP overexpression), other "hidden" factors also exist. Some studies have stressed the importance of epistasis as a genetic background. ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.104086

    authors: Kocourek F,Stara J,Sopko B,Talacko P,Harant K,Hovorka T,Erban T

    更新日期:2021-02-20 00:00:00

  • Pipeline to assess the greatest source of technical variance in quantitative proteomics using metabolic labelling.

    abstract::The biological variance in protein expression of interest to biologists can only be accessed if the technical variance of the protein quantification method is low compared with the biological variance. Technical variance is dependent on the protocol employed within a quantitative proteomics experiment and accumulated ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.09.020

    authors: Russell MR,Lilley KS

    更新日期:2012-12-21 00:00:00

  • 'Omics' techniques for identifying flooding-response mechanisms in soybean.

    abstract::Plant growth and productivity are adversely influenced by various environmental stresses, which often lead to reduced seedling growth and decreased crop yields. Plants respond to stressful conditions through changes in 'omics' profiles, including transcriptomics, proteomics, and metabolomics. Linking plant phenotype t...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2012.12.016

    authors: Komatsu S,Shirasaka N,Sakata K

    更新日期:2013-11-20 00:00:00

  • SKIP and BIR-1/Survivin have potential to integrate proteome status with gene expression.

    abstract:UNLABELLED:SKIP and BIR are evolutionarily conserved proteins; SKIP (SKP-1) is a known transcription and splicing cofactor while BIR-1/Survivin regulates cell division, gene expression and development. Their loss of function induces overlapping developmental phenotypes. We searched for SKP-1 and BIR-1 interaction on pr...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.07.023

    authors: Kostrouch D,Kostrouchová M,Yilma P,Chughtai AA,Novotný JP,Novák P,Kostrouchová V,Kostrouchová M,Kostrouch Z

    更新日期:2014-10-14 00:00:00

  • Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes.

    abstract:UNLABELLED:Mapping protein-protein interactions for chromatin-associated proteins remains challenging. Here we explore the use of BioID, a proximity biotinylation approach in which a mutated biotin ligase (BirA*) is fused to a bait of interest, allowing for the local activation of biotin and subsequent biotinylation of...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.09.011

    authors: Lambert JP,Tucholska M,Go C,Knight JD,Gingras AC

    更新日期:2015-04-06 00:00:00

  • Comparative proteomic analysis of sex-biased proteins in ovary and testis at different stages of Spodoptera litura.

    abstract::Sex-biased protein is thought to be able to drive the phenotypic differences in males and females in insects. In this study, 1385 and 1727 proteins were identified as differentially accumulated proteins (DAPs) by comparing the protein abundances at pupae stage with those at adult stage in ovary and testis of S.litura,...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103439

    authors: Sun R,Sun Z,Chen Y,Zhu F,Li Y,Zhong G,Yi X

    更新日期:2019-08-30 00:00:00

  • Differential proteomics reveals S100-A11 as a key factor in aldosterone-induced collagen expression in human cardiac fibroblasts.

    abstract::Aldosterone (Aldo) could induce cardiac fibrosis, a hallmark of heart disease. Aldo direct effects on collagen production in cardiac fibroblasts remain controversial. Our aim is to characterize changes in the proteome of adult human cardiac fibroblasts treated with Aldo to identify new proteins altered that might be n...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.07.011

    authors: Martínez-Martínez E,Ibarrola J,Lachén-Montes M,Fernández-Celis A,Jaisser F,Santamaría E,Fernández-Irigoyen J,López-Andrés N

    更新日期:2017-08-23 00:00:00