Proteomic analysis of healthy and atretic porcine follicular granulosa cells.

Abstract:

:Follicular atresia is initiated with the apoptosis of granulosa cells (GCs) after birth in mammals. The molecular mechanisms underlying GC apoptosis during follicular selection are unclear at present. The objective of this study is to identify the proteins and pathways that may be involved in porcine follicular atresia. Proteins isolated from GCs collected from healthy and atretic follicles were detected by tandem mass tag (TMT) protein labeling and LC-MS/MS. A total of 4591 proteins in the healthy follicle granulosa cell (HFGC) and atretic follicle granulosa cell (AFGC) groups were identified, and 399 differentially abundant proteins were found between the HFGC and AFGC groups; of which 262 proteins were significantly up-regulated and 137 proteins were significantly down-regulated. Differential protein enrichment analysis showed that proteins involved in proteolysis, protein destabilization, phagocytosis, and engulfment were more abundant in the AFGC group. Also, these proteins were mainly involved in the lysosome, phagosome, autophagy, and apoptosis pathways. Specially, PTGFRN is potential important regulated protein in the development of the antral follicle, and down-regulation of PTGFRN in GCs may lead to follicular atresia. Our study shows that the identified proteins and their related signaling pathways may play crucial roles during health follicle develop to atretic follicle. SIGNIFICANCE: Follicular atresia during 'selection' reduces the reproductive potential of sows. In this study, we found 399 proteins differentially abundant. between the HFGC and AFGC groups. These results establish a foundation for elucidating the mechanism of follicular atresia in swine.

journal_name

J Proteomics

journal_title

Journal of proteomics

authors

Shan X,Yu T,Yan X,Wu J,Fan Y,Guan X,Fang F,Lin Y,Zhang Y,Li Y,Liu Y

doi

10.1016/j.jprot.2020.104027

subject

Has Abstract

pub_date

2021-02-10 00:00:00

pages

104027

eissn

1874-3919

issn

1876-7737

pii

S1874-3919(20)30395-X

journal_volume

232

pub_type

杂志文章
  • pI-based fractionation of serum proteomes versus anion exchange after enhancement of low-abundance proteins by means of peptide libraries.

    abstract::The pre-treatment of biological extracts with the aim of detecting very low-abundance proteins generates complexity requiring a proper fractionation. Therefore the success of identifying all newly detectable species depends on the selected fractionation methods. In this context and starting from a human serum, where t...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2009.06.014

    authors: Restuccia U,Boschetti E,Fasoli E,Fortis F,Guerrier L,Bachi A,Kravchuk AV,Righetti PG

    更新日期:2009-08-20 00:00:00

  • Systematically integrated metabonomic-proteomic studies of Escherichia coli under ciprofloxacin stress.

    abstract::Many antibiotics are used to kill pathogenic Escherichia coli each year, resulting in an increase in the number of antibiotic-resistant strains. In this study, an integrated metabonomic-proteomic method was performed to systematically compare the profiles of metabolites and proteins with or without ciprofloxacin (CFLX...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.03.002

    authors: Li W,Zhang S,Wang X,Yu J,Li Z,Lin W,Lin X

    更新日期:2018-05-15 00:00:00

  • N-Glycosylation pattern of recombinant human CD82 (KAI1), a tumor-associated membrane protein.

    abstract::The membrane glycoprotein CD82 (KAI1) has attracted increasing attention as a suppressor of cell migration, related tumor invasion, as well as metastasis. The glycosylation of CD82 has been shown to be involved in a correlative cell adhesion and motility. However, the N-glycosylation pattern of CD82 has not been descr...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.11.013

    authors: Wang H,Zhang W,Zhao J,Zhang L,Liu M,Yan G,Yao J,Yu H,Yang P

    更新日期:2012-02-02 00:00:00

  • Peptidomic comparison and characterization of the major components of the venom of the giant ant Dinoponera quadriceps collected in four different areas of Brazil.

    abstract:UNLABELLED:Despite the noxious effects inflicted by Dinoponera ant's envenomation, the information about the biological properties and composition of their venom is still very limited. Ants from the genus Dinoponera are believed to be the world's largest living ants with a body length of 3cm. Their occurrence is restri...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.10.017

    authors: Cologna CT,Cardoso Jdos S,Jourdan E,Degueldre M,Upert G,Gilles N,Uetanabaro AP,Costa Neto EM,Thonart P,de Pauw E,Quinton L

    更新日期:2013-12-06 00:00:00

  • Reproducibility of combinatorial peptide ligand libraries for proteome capture evaluated by selected reaction monitoring.

    abstract:UNLABELLED:Systems biology studies require the capability to quantify with high precision proteins spanning a broad range of abundances across multiple samples. However, the broad range of protein expression in cells often precludes the detection of low-abundance proteins. Different sample processing techniques can be ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.05.037

    authors: Di Girolamo F,Righetti PG,Soste M,Feng Y,Picotti P

    更新日期:2013-08-26 00:00:00

  • Quantitative iTRAQ LC-MS/MS proteomics reveals the cellular response to heterologous protein overexpression and the regulation of HAC1 in Pichia pastoris.

    abstract:UNLABELLED:The methylotrophic yeast Pichia pastoris is an attractive platform for a plethora of recombinant proteins. There is growing evidence that host cells producing recombinant proteins are exposed to a variety of cellular stresses resulting in the induction of the unfolded protein response (UPR) pathway. At prese...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.06.031

    authors: Lin XQ,Liang SL,Han SY,Zheng SP,Ye YR,Lin Y

    更新日期:2013-10-08 00:00:00

  • Partially isobaric peptide termini labeling assisted proteome quantitation based on MS and MS/MS signals.

    abstract:UNLABELLED:Isotopic labeling and isobaric labeling are two kinds of the typical quantification method that have been widely used in proteomics analysis. Herein, a novel quantitative strategy, partially isobaric peptide termini labeling (PITL), was developed to overcome the drawbacks of each above-mentioned labeling str...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.11.014

    authors: Zhang S,Wu Q,Shan Y,Zhou Y,Zhang L,Zhang Y

    更新日期:2015-01-30 00:00:00

  • Quantitative phosphoproteomics reveals novel phosphorylation events in insulin signaling regulated by protein phosphatase 1 regulatory subunit 12A.

    abstract:UNLABELLED:Serine/threonine protein phosphatase 1 regulatory subunit 12A (PPP1R12A) modulates the activity and specificity of the catalytic subunit of protein phosphatase 1, regulating various cellular processes via dephosphorylation. Nonetheless, little is known about phosphorylation events controlled by PPP1R12A in s...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.06.010

    authors: Zhang X,Ma D,Caruso M,Lewis M,Qi Y,Yi Z

    更新日期:2014-09-23 00:00:00

  • SKIP and BIR-1/Survivin have potential to integrate proteome status with gene expression.

    abstract:UNLABELLED:SKIP and BIR are evolutionarily conserved proteins; SKIP (SKP-1) is a known transcription and splicing cofactor while BIR-1/Survivin regulates cell division, gene expression and development. Their loss of function induces overlapping developmental phenotypes. We searched for SKP-1 and BIR-1 interaction on pr...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.07.023

    authors: Kostrouch D,Kostrouchová M,Yilma P,Chughtai AA,Novotný JP,Novák P,Kostrouchová V,Kostrouchová M,Kostrouch Z

    更新日期:2014-10-14 00:00:00

  • Beyond single modification: Reanalysis of the acetylproteome of human sperm reveals widespread multiple modifications.

    abstract::Sperm is an ideal model for studying post-translational modifications since its transcriptional and translational activities are nearly silent. Thus, sperm functions are mainly regulated at the protein level, especially by means of post-translational modifications. Published proteomic datasets may contain valuable und...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.05.022

    authors: Zhou T,Xia X,Liu J,Wang G,Guo Y,Guo X,Wang X,Sha J

    更新日期:2015-08-03 00:00:00

  • ITRAQ-based quantitative proteomics reveals the first proteome profiles of piglets infected with porcine circovirus type 3.

    abstract::Porcine circovirus type 3 (PCV3) infection induces porcine dermatitis and nephropathy syndrome, reproductive failure, and multisystemic inflammatory lesions in piglets and sows. To better understand the host responses to PCV3 infection, isobaric tags for relative and absolute quantification (iTRAQ) labeling combined w...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103598

    authors: Jiang H,Wei L,Wang D,Wang J,Zhu S,She R,Liu T,Tian J,Quan R,Hou L,Li Z,Chu J,Zhou J,Guo Y,Xi Y,Song H,Yuan F,Liu J

    更新日期:2020-02-10 00:00:00

  • Environmental toxicology and omics: A question of sex.

    abstract::Molecular initiating events and downstream transcriptional/proteomic responses provide valuable information for adverse outcome pathways, which can be used predict the effects of chemicals on physiological systems. There has been a paucity of research that addresses sex-specific expression profiling in toxicology and ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2017.09.010

    authors: Liang X,Feswick A,Simmons D,Martyniuk CJ

    更新日期:2018-02-10 00:00:00

  • A two-stage spin cartridge for integrated protein precipitation, digestion and SDS removal in a comparative bottom-up proteomics workflow.

    abstract:UNLABELLED:Protein precipitation with organic solvent is an effective means of depleting contaminants such as sodium dodecyl sulfate (SDS), while maintaining high analyte recovery. Here, we report the use of a disposable two-stage spin cartridge to facilitate isolation of the precipitated protein, with subsequent enzym...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.09.030

    authors: Crowell AM,MacLellan DL,Doucette AA

    更新日期:2015-04-06 00:00:00

  • Elucidation of the dynamic nature of interactome networks: A practical tutorial.

    abstract::Considering that proteins are usually engaged in complex and dynamic networks of interactions to exert their activity, a way to understand proteins' functions and the molecular mechanisms in which those proteins are involved, is by studying their interactome. In this sense, this tutorial presents a simple pipeline for...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2017.04.011

    authors: Anjo SI,Martins-Marques T,Pereira P,Girão H,Manadas B

    更新日期:2018-01-16 00:00:00

  • Identification and validation of platelet low biological variation proteins, superior to GAPDH, actin and tubulin, as tools in clinical proteomics.

    abstract:UNLABELLED:Accurate biomarker quantification requires carefully chosen normalisation procedures. When single proteins are used as loading controls (LCs), it is crucial that their expressional stability must be known. Platelets are an important biomarker source, especially for neurological diseases. We performed a syste...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2013.10.015

    authors: Baumgartner R,Umlauf E,Veitinger M,Guterres S,Rappold E,Babeluk R,Mitulović G,Oehler R,Zellner M

    更新日期:2013-12-06 00:00:00

  • An in-depth snake venom proteopeptidome characterization: Benchmarking Bothrops jararaca.

    abstract::A large-scale proteomic approach was devised to advance the understanding of venom composition. Bothrops jararaca venom was fractionated by OFFGEL followed by chromatography, generating peptidic and proteic fractions. The latter was submitted to trypsin digestion. Both fractions were separately analyzed by reversed-ph...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.06.029

    authors: Nicolau CA,Carvalho PC,Junqueira-de-Azevedo IL,Teixeira-Ferreira A,Junqueira M,Perales J,Neves-Ferreira AG,Valente RH

    更新日期:2017-01-16 00:00:00

  • Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes.

    abstract:UNLABELLED:Mapping protein-protein interactions for chromatin-associated proteins remains challenging. Here we explore the use of BioID, a proximity biotinylation approach in which a mutated biotin ligase (BirA*) is fused to a bait of interest, allowing for the local activation of biotin and subsequent biotinylation of...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.09.011

    authors: Lambert JP,Tucholska M,Go C,Knight JD,Gingras AC

    更新日期:2015-04-06 00:00:00

  • Transcriptome-facilitated proteomic characterization of rear-fanged snake venoms reveal abundant metalloproteinases with enhanced activity.

    abstract::High-throughput technologies were used to identify venom gland toxin expression and to characterize the venom proteomes of two rear-fanged snakes, Ahaetulla prasina (Asian Green Vine Snake) and Borikenophis portoricensis (Puerto Rican Racer). Sixty-nine complete toxin-coding transcripts from 12 venom protein superfami...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.08.004

    authors: Modahl CM,Frietze S,Mackessy SP

    更新日期:2018-09-15 00:00:00

  • Quantitative proteomics analysis by iTRAQ revealed underlying changes in thermotolerance of Arthrospira platensis.

    abstract::Growth temperature is a critical factor that affects cultivation of Arthrospira platensis which is a type of cyanobacterium widely known as Spirulina that has significant commercial value. To investigate the molecular mechanism underlying the thermotolerance of Spirulina, differential protein expression profiling was ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.06.015

    authors: Chang R,Lv B,Li B

    更新日期:2017-08-08 00:00:00

  • Neuropeptide alterations in the tree shrew hypothalamus during volatile anesthesia.

    abstract::Neuropeptides are critical signaling molecules, involved in the regulation of diverse physiological processes including energy metabolism, pain perception and brain cognitive state. Prolonged general anesthesia has an impact on many of these processes, but the regulation of peptides by general anesthetics is poorly un...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.11.002

    authors: Fouillen L,Petruzziello F,Veit J,Bhattacharyya A,Kretz R,Rainer G,Zhang X

    更新日期:2013-03-27 00:00:00

  • New proteomic developments to analyze protein isomerization and their biological significance in plants.

    abstract::Spontaneous isoaspartyl formation from aspartyl dehydration or asparaginyl deamidation is a major source of modifications in protein structures. In cells, these conformational changes could be reverted by the protein L-isoaspartyl methyltransferase (PIMT) repair enzyme that converts the isoaspartyl residues into aspar...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2011.04.026

    authors: Grappin P,Collet B,Yang H,Jallet D,Ogé L,Zubarev R

    更新日期:2011-08-12 00:00:00

  • Venomics and antivenomics of Bothrops erythromelas from five geographic populations within the Caatinga ecoregion of northeastern Brazil.

    abstract::The Caatinga lancehead, Bothrops erythromelas, is a medically relevant species, responsible for most of the snakebite accidents in most parts of its distribution range in northeastern Brazil. The spectrum and geographic variability of its venom toxins were investigated applying a venomics approach to venom pools from ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.11.011

    authors: Jorge RJ,Monteiro HS,Gonçalves-Machado L,Guarnieri MC,Ximenes RM,Borges-Nojosa DM,Luna KP,Zingali RB,Corrêa-Netto C,Gutiérrez JM,Sanz L,Calvete JJ,Pla D

    更新日期:2015-01-30 00:00:00

  • Deregulation of smooth muscle cell cytoskeleton within the human atherosclerotic coronary media layer.

    abstract:UNLABELLED:Fatal events derived from coronary atherosclerosis are the major cause of mortality in the developed countries. Proteomic analysis of the atherosclerotic coronary artery has been mainly carried out with whole tissue extracts, making it difficult to distinguish the alterations present in every region of the p...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2013.01.032

    authors: de la Cuesta F,Zubiri I,Maroto AS,Posada M,Padial LR,Vivanco F,Alvarez-Llamas G,Barderas MG

    更新日期:2013-04-26 00:00:00

  • The HLA-DP peptide repertoire from human respiratory syncytial virus is focused on major structural proteins with the exception of the viral polymerase.

    abstract::The recognition by specific T helper cells of viral antigenic peptides complexed with HLA class II molecules exposed on the surface of antigen presenting cells is the first step of the complex cascade of immunological events that generates the protective cellular and humoral immune responses. The HLA class II-restrict...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103759

    authors: Lorente E,Barnea E,Mir C,Admon A,López D

    更新日期:2020-06-15 00:00:00

  • Proteomic studies on protein modification by cyclopentenone prostaglandins: expanding our view on electrophile actions.

    abstract::Cyclopentenone prostaglandins (cyPG) are lipid mediators that participate in the mechanisms regulating inflammation and tumorigenesis. cyPG are electrophilic compounds that act mainly through the covalent modification of cellular proteins. The stability of many cyPG-protein adducts makes them suitable for proteomic an...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2011.03.028

    authors: Garzón B,Oeste CL,Díez-Dacal B,Pérez-Sala D

    更新日期:2011-10-19 00:00:00

  • The Drosophila melanogaster sperm proteome-II (DmSP-II).

    abstract::Advances in mass spectrometry technology, high-throughput proteomics and genome annotations have resulted in significant increases in our molecular understanding of sperm composition. Using improved separation and detection methods and an updated genome annotation, a re-analysis of the Drosophila melanogaster sperm pr...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2010.09.002

    authors: Wasbrough ER,Dorus S,Hester S,Howard-Murkin J,Lilley K,Wilkin E,Polpitiya A,Petritis K,Karr TL

    更新日期:2010-10-10 00:00:00

  • Proteomic profiling of splenic interstitial fluid of malnourished mice infected with Leishmania infantum reveals defects on cell proliferation and pro-inflammatory response.

    abstract::Protein malnutrition is a risk factor for developing visceral leishmaniasis. Because we previously demonstrated that protein malnutrition and infection with Leishmania infantum disrupts the splenic microarchitecture in BALB/c mice, alters T cell-subsets and increases splenic parasite load, we hypothesize that splenic ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103492

    authors: Losada-Barragán M,Umaña-Pérez A,Rodriguez-Vega A,Cuervo-Escobar S,Azevedo R,Morgado FN,de Frias Carvalho V,Aquino P,Carvalho PC,Porrozzi R,Sánchez-Gómez M,Padron G,Cuervo P

    更新日期:2019-09-30 00:00:00

  • Comparative proteomics of Mesembryanthemum crystallinum guard cells and mesophyll cells in transition from C3 to CAM.

    abstract::Salinity can induce Mesembryanthemum crystallinum to shift its photosynthesis from C3 to crassulacean acid metabolism (CAM), leading to enhanced plant water use efficiency. Studying how M. crystallinum changes its carbon fixation pathways is important for potential translation into crops and enhancing crop resilience....

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.104019

    authors: Guan Q,Kong W,Zhu D,Zhu W,Dufresne C,Tian J,Chen S

    更新日期:2021-01-16 00:00:00

  • Combined proteomics and transcriptomics identifies sting-related toxins of jellyfish Cyanea nozakii.

    abstract:UNLABELLED:Jellyfish sting has become a worldwide issue of critical concern to human health and safety in coastal areas in recent decades. Cyanea nozakii is one of the dominant blooming species and dangerous stingers in China. However, it remains unclear how many and what types of toxins are present in the venom. So, w...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.07.023

    authors: Li R,Yu H,Yue Y,Liu S,Xing R,Chen X,Li P

    更新日期:2016-10-04 00:00:00

  • Insights into enzyme secretion by filamentous fungi: comparative proteome analysis of Trichoderma reesei grown on different carbon sources.

    abstract:UNLABELLED:Trichoderma reesei is the main industrial producer of lignocellulolytic enzymes, and the secretory behavior of this fungus strongly depends on the carbon sources. To gain insights into how the T. reesei adapts to various carbons and regulates enzyme production, the extra- and intracellular proteomes of T. re...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.06.014

    authors: Jun H,Guangye H,Daiwen C

    更新日期:2013-08-26 00:00:00