Insights into enzyme secretion by filamentous fungi: comparative proteome analysis of Trichoderma reesei grown on different carbon sources.

Abstract:

UNLABELLED:Trichoderma reesei is the main industrial producer of lignocellulolytic enzymes, and the secretory behavior of this fungus strongly depends on the carbon sources. To gain insights into how the T. reesei adapts to various carbons and regulates enzyme production, the extra- and intracellular proteomes of T. reesei grown in defined medium with lactose or xylose as the carbon source were investigated. Results indicated that the composition of extracellular proteome differed considerably depending on the carbons. The main cellobiohydrolases, i.e. Cel7a/Cel6 were the most abundant cellulolytic enzymes identified in both media, and found to be more abundant in lactose-grown culture. As compared to lactose, xylose can serve as a potent inducer of xylanolytic enzymes. Interestingly, most identified intracellular proteins are involved in carbon metabolism. Enzymes involved in utilization of xylose, such as d-xylose reductase (Xyl1p) and d-xylose dehydrogenase (Xyl2p), were present at elevated levels in the culture growing on xylose but only in minor amounts in the lactose culture. However, lactose induction significantly activated the expression of key enzymes involved in glycolysis pathway and citrate cycle. Importantly, the protein Xyl1p which participates both in the lactose and the xylose catabolism was verified as a potential regulator for cellulase formation in T. reesei. BIOLOGICAL SIGNIFICANCE:This study not only gives an overview of the ubiquitous cellular changes induced by the two conventional carbon substrates, but offers the framework for understanding the mechanisms behind the carbon-dependent induction of extracellular enzymes in T. reesei. Moreover, this study provides a potential target (Xyl1p) that could be tentatively used for metabolic engineering of T. reesei for cost-effective cellulase production.

journal_name

J Proteomics

journal_title

Journal of proteomics

authors

Jun H,Guangye H,Daiwen C

doi

10.1016/j.jprot.2013.06.014

subject

Has Abstract

pub_date

2013-08-26 00:00:00

pages

191-201

eissn

1874-3919

issn

1876-7737

pii

S1874-3919(13)00330-8

journal_volume

89

pub_type

杂志文章
  • Effect of diethylcarbamazine, butylated hydroxy anisole and methyl substituted chalcone on filarial parasite Setaria cervi: proteomic and biochemical approaches.

    abstract::For survival, parasite exerts several lines of defense of which drug neutralization is one of the major phenomena. Lack of phase I cytochrome P450 in some of the nematode render them depend on the phase II detoxification system involving GST as a major detoxifying enzymes. In present study, the antifilarial DEC, pheno...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.04.020

    authors: Rathaur S,Yadav M,Singh N,Singh A

    更新日期:2011-08-24 00:00:00

  • Schistosome infections induce significant changes in the host biliary proteome.

    abstract:UNLABELLED:Schistosomiasis is a disease caused by blood trematodes affecting man and animals that represents an important human health and veterinary problem. Main damages caused by this infection are a consequence of the host inflammatory reaction against the parasite eggs trapped inside the liver. Despite that the he...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.11.009

    authors: de la Torre-Escudero E,Pérez-Sánchez R,Manzano-Román R,Oleaga A

    更新日期:2015-01-30 00:00:00

  • QuantiSpec--Quantitative mass spectrometry data analysis of (15)N-metabolically labeled proteins.

    abstract::For relative protein quantitation by mass spectrometry we metabolically labeled E. coli bacteria with (15)N-enriched diets. Proteins extracted from (15)N-labeled and unlabeled E. coli bacteria were mixed, separated by two-dimensional gel electrophoresis and enzymatically digested. The resulting tryptic peptides were a...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2008.10.004

    authors: Haegler K,Mueller NS,Maccarrone G,Hunyadi-Gulyas E,Webhofer C,Filiou MD,Zhang Y,Turck CW

    更新日期:2009-01-30 00:00:00

  • Vitamin D binding protein isoforms as candidate predictors of disease extension in childhood arthritis.

    abstract:INTRODUCTION:Juvenile idiopathic arthritis (JIA) comprises a poorly understood group of chronic autoimmune diseases with variable clinical outcomes. We investigated whether the synovial fluid (SF) proteome could distinguish a subset of patients in whom disease extends to affect a large number of joints. METHODS:SF sam...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.06.024

    authors: Gibson DS,Newell K,Evans AN,Finnegan S,Manning G,Scaife C,McAllister C,Pennington SR,Duncan MW,Moore TL,Rooney ME

    更新日期:2012-09-18 00:00:00

  • Bioactive peptides in plant-derived foodstuffs.

    abstract:UNLABELLED:A literature survey covering the presence of bioactive peptides in plant-derived foodstuffs is presented. Examples are given of plant peptides associated with a beneficial effect on human health. The main bioactive effects of these peptides are defined and their mechanism of action described, when known. Cur...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2016.03.048

    authors: Maestri E,Marmiroli M,Marmiroli N

    更新日期:2016-09-16 00:00:00

  • A Fusarium graminearum strain-comparative proteomic approach identifies regulatory changes triggered by agmatine.

    abstract:UNLABELLED:Plant pathogens face different environmental clues depending on the stage of the infection cycle they are in. Fusarium graminearum infects small grain cereals producing trichothecenes type B (TB) that act as virulence factor in the interaction with the plant and have important food safety implications. This ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.11.010

    authors: Pasquali M,Serchi T,Cocco E,Leclercq CC,Planchon S,Guignard C,Renaut J,Hoffmann L

    更新日期:2016-03-30 00:00:00

  • The proteomics of heavy metal hyperaccumulation by plants.

    abstract::Hyperaccumulators are distinguished from non-hyperaccumulators on the basis of their capacity to extract heavy metal ions from the soil, their more efficient root-to-shoot translocation of these ions and their greater ability to detoxify and sequester heavy metals in the shoot. The understanding of the mechanisms unde...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2012.12.006

    authors: Visioli G,Marmiroli N

    更新日期:2013-02-21 00:00:00

  • Systematically integrated metabonomic-proteomic studies of Escherichia coli under ciprofloxacin stress.

    abstract::Many antibiotics are used to kill pathogenic Escherichia coli each year, resulting in an increase in the number of antibiotic-resistant strains. In this study, an integrated metabonomic-proteomic method was performed to systematically compare the profiles of metabolites and proteins with or without ciprofloxacin (CFLX...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.03.002

    authors: Li W,Zhang S,Wang X,Yu J,Li Z,Lin W,Lin X

    更新日期:2018-05-15 00:00:00

  • Proteomics analysis of aromatic catabolic pathways in thermophilic Geobacillus thermodenitrificans NG80-2.

    abstract::Geobacillus thermodenitrificans NG80-2 is a crude oil-degrading thermophilic bacterium isolated from an oil reservoir in China. In this study, the gene clusters and pathways for the degradation of benzoate (via benzoyl-CoA), phenylacetate (via phenylacetyl-CoA), 4-hydroxyphenylacetate (via 3,4-dihydroxyphenylacetate) ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.10.035

    authors: Li Y,Wu J,Wang W,Ding P,Feng L

    更新日期:2012-02-02 00:00:00

  • Neuropeptide alterations in the tree shrew hypothalamus during volatile anesthesia.

    abstract::Neuropeptides are critical signaling molecules, involved in the regulation of diverse physiological processes including energy metabolism, pain perception and brain cognitive state. Prolonged general anesthesia has an impact on many of these processes, but the regulation of peptides by general anesthetics is poorly un...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.11.002

    authors: Fouillen L,Petruzziello F,Veit J,Bhattacharyya A,Kretz R,Rainer G,Zhang X

    更新日期:2013-03-27 00:00:00

  • Cross-talk between α7 nAchR and NMDAR revealed by protein profiling.

    abstract::Functional regulation of NMDA receptor (NMDAR) by the activation of α7 nicotinic acetylcholine receptor (α7nAChR) has been reported, although the molecular signaling pathway underlying this process remains largely unknown. We employed a label-free quantitative proteomics approach to identify potential intracellular mo...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.10.018

    authors: Zhang H,Li T,Li S,Liu F

    更新日期:2016-01-10 00:00:00

  • Investigation of the estuarine stonefish (Synanceia horrida) venom composition.

    abstract::The Estuarine stonefish (Synanceia horrida) is recognised as one of the most venomous fish species in the world but the overall venom composition has yet to be investigated using in-depth transcriptomic and proteomic methods. To date, known venom components are restricted to a hyaluronidase and a large, pore-forming t...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.04.002

    authors: Ziegman R,Undheim EAB,Baillie G,Jones A,Alewood PF

    更新日期:2019-06-15 00:00:00

  • Differential impacts of individual and combined exposures of deoxynivalenol and zearalenone on the HepaRG human hepatic cell proteome.

    abstract::Numerous surveys have highlighted the natural co-occurrence of deoxynivalenol (DON) and zearalenone (ZEA) mycotoxins in food and feed. Nevertheless, data regarding cellular mechanisms involved in response to their individual and simultaneous exposures are lacking. In this study, in order to analyze how low mycotoxin d...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.11.025

    authors: Smith MC,Timmins-Schiffman E,Coton M,Coton E,Hymery N,Nunn BL,Madec S

    更新日期:2018-02-20 00:00:00

  • Mass spectrometry imaging for drugs and metabolites.

    abstract::Mass spectrometric imaging (MSI) is a powerful analytical technique that provides two- and three-dimensional spatial maps of multiple compounds in a single experiment. This technique has been routinely applied to protein, peptide, and lipid molecules with much less research reporting small molecule distributions, espe...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2011.03.032

    authors: Greer T,Sturm R,Li L

    更新日期:2011-11-18 00:00:00

  • Validation of serum protein profiles by a dual antibody array approach.

    abstract::In recent years, affinity-based technologies have become important tools for serum profiling to uncover protein expression patterns linked to disease state or therapeutic effects. In this study, we describe a path towards the production of an antibody microarray to allow protein profiling of biotinylated human serum s...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2009.09.009

    authors: Rimini R,Schwenk JM,Sundberg M,Sjöberg R,Klevebring D,Gry M,Uhlén M,Nilsson P

    更新日期:2009-12-01 00:00:00

  • Metabolome and proteome changes in skeletal muscle and blood of pre-weaning calves fed leucine and threonine supplemented diets.

    abstract::In pre-weaning calves, both leucine and threonine play important roles in growth and muscle metabolism. In this study, metabolomics, proteomics and clinical chemistry were used to assess the effects of leucine and threonine supplementation added to milk replacer on 14 newborn Holstein male calves: 7 were fed a control...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103677

    authors: Yu K,Matzapetakis M,Horvatić A,Terré M,Bach A,Kuleš J,Yeste N,Gómez N,Arroyo L,Rodríguez-Tomàs E,Peña R,Guillemin N,de Almeida AM,Eckersall PD,Bassols A

    更新日期:2020-03-30 00:00:00

  • Environmental toxicology and omics: A question of sex.

    abstract::Molecular initiating events and downstream transcriptional/proteomic responses provide valuable information for adverse outcome pathways, which can be used predict the effects of chemicals on physiological systems. There has been a paucity of research that addresses sex-specific expression profiling in toxicology and ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2017.09.010

    authors: Liang X,Feswick A,Simmons D,Martyniuk CJ

    更新日期:2018-02-10 00:00:00

  • Venomics and antivenomics of Bothrops erythromelas from five geographic populations within the Caatinga ecoregion of northeastern Brazil.

    abstract::The Caatinga lancehead, Bothrops erythromelas, is a medically relevant species, responsible for most of the snakebite accidents in most parts of its distribution range in northeastern Brazil. The spectrum and geographic variability of its venom toxins were investigated applying a venomics approach to venom pools from ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.11.011

    authors: Jorge RJ,Monteiro HS,Gonçalves-Machado L,Guarnieri MC,Ximenes RM,Borges-Nojosa DM,Luna KP,Zingali RB,Corrêa-Netto C,Gutiérrez JM,Sanz L,Calvete JJ,Pla D

    更新日期:2015-01-30 00:00:00

  • Proteomic analysis of non-heading Chinese cabbage infected with Hyaloperonospora parasitica.

    abstract:UNLABELLED:Downy mildew is a serious fungal disease in non-heading Chinese cabbage (Brassica campestris ssp. chinensis Makino) that is caused by Hyaloperonospora parasitica, which infects members of the Brassicaceae family. For breeding improvement, researchers must understand the defence mechanisms employed by non-hea...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.11.028

    authors: Sun C,Wang L,Hu D,Riquicho AR,Liu T,Hou X,Li Y

    更新日期:2014-02-26 00:00:00

  • Interactome: Smart hematophagous triatomine salivary gland molecules counteract human hemostasis during meal acquisition.

    abstract::Human populations are constantly plagued by hematophagous insects' bites, in particular the triatomine insects that are vectors of the Trypanosoma cruzi agent in Chagas disease. The pharmacologically-active molecules present in the salivary glands of hematophagous insects are injected into the human skin to initiate a...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2012.05.001

    authors: de Araújo CN,Bussacos AC,Sousa AO,Hecht MM,Teixeira AR

    更新日期:2012-07-16 00:00:00

  • Identification of prognostic protein biomarkers in childhood acute lymphoblastic leukemia (ALL).

    abstract::Early response to 7 days of prednisolone (PRED) treatment is one of the important prognostic factors in predicting eventual outcome in childhood acute lymphoblastic leukemia (ALL). Using proteomic tools and clinically important leukemia cell lines (REH, 697, Sup-B15, RS4; 11), we have identified potential prognostic p...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.02.034

    authors: Jiang N,Kham SK,Koh GS,Suang Lim JY,Ariffin H,Chew FT,Yeoh AE

    更新日期:2011-05-16 00:00:00

  • Microfibril associated protein 4 (MFAP4) is a carrier of the tumor associated carbohydrate sialyl-Lewis x (sLex) in pancreatic adenocarcinoma.

    abstract::Late diagnosis of pancreatic ductal adenocarcinoma (PDA) is one of the reasons of its low 5-year survival rate and it is due to its unspecific symptoms during the first stages of the disease and the lack of reliable serological markers. Since PDA shows an altered glycan expression, here we have focused on finding nove...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.104004

    authors: Guerrero PE,Duran A,Ortiz MR,Castro E,Garcia-Velasco A,Llop E,Peracaula R

    更新日期:2021-01-16 00:00:00

  • Proteome studies of bacterial antibiotic resistance mechanisms.

    abstract::Ever since antibiotics were used to help humanity battle infectious diseases, microorganisms straight away fought back. Antibiotic resistance mechanisms indeed provide microbes with possibilities to by-pass and survive the action of antibiotic drugs. Several methods have been employed to identify these microbial resis...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2013.10.027

    authors: Vranakis I,Goniotakis I,Psaroulaki A,Sandalakis V,Tselentis Y,Gevaert K,Tsiotis G

    更新日期:2014-01-31 00:00:00

  • Proteomic identification of immunodominant chlamydial antigens in a mouse model.

    abstract::Chlamydia trachomatis is the most common bacterial sexually transmitted pathogen in the world. To identify new vaccine candidates a protein microarray was constructed by expressing the open reading frames (ORFs) from Chlamydia mouse pneumonitis (MoPn). C57BL/6, C3H/HeN and BALB/c mice were immunized either intranasall...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.08.017

    authors: Teng A,Cruz-Fisher MI,Cheng C,Pal S,Sun G,Ralli-Jain P,Molina DM,Felgner PL,Liang X,de la Maza LM

    更新日期:2012-12-21 00:00:00

  • Vitamin D-binding protein as a biomarker of active disease in acute intermittent porphyria.

    abstract:UNLABELLED:Acute intermittent porphyria (AIP) is an autosomal dominant metabolic disorder caused by a deficiency of hepatic porphobilinogen deaminase (PBGD). The disease is characterized by life threatening acute neurovisceral attacks. The aim of this study was to identify metabolites secreted by the hepatocytes that r...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2015.05.004

    authors: Serrano-Mendioroz I,Sampedro A,Mora MI,Mauleón I,Segura V,Enríquez de Salamanca R,Harper P,Sardh E,Corrales FJ,Fontanellas A

    更新日期:2015-09-08 00:00:00

  • Targeted quantitative proteomic investigation employing multiple reaction monitoring on quantitative changes in proteins that regulate volatile biosynthesis of strawberry fruit at different ripening stages.

    abstract::A targeted quantitative proteomic investigation employing the multiple reaction monitoring (MRM, SRM) technique was conducted on strawberry fruit at different development stages. We investigated 22 proteins and isoforms from 32 peptides with 111 peptide transitions, which may be involved in the volatile aroma biosynth...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.06.004

    authors: Song J,Du L,Li L,Palmer LC,Forney CF,Fillmore S,Zhang Z,Li X

    更新日期:2015-08-03 00:00:00

  • Comprehensive glycomics comparison between colon cancer cell cultures and tumours: implications for biomarker studies.

    abstract:UNLABELLED:Altered glycosylation is commonly observed in colorectal cancer. In vitro models are frequently used to study this cancer but little is known about the differences that may exist between these model cell systems and tumour tissue. We have compared the membrane protein glycosylation of five colorectal cancer ...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2014.05.002

    authors: Chik JH,Zhou J,Moh ES,Christopherson R,Clarke SJ,Molloy MP,Packer NH

    更新日期:2014-08-28 00:00:00

  • iTRAQ-based quantitative proteomic analysis provides insights into strong broodiness in Muscovy duck (Cairina moschata) combined with metabolomics analysis.

    abstract::Much attention has been paid to the broodiness of the Muscovy duck, but the molecular mechanism of broodiness remains largely unknown. In this study, the ovary tissues of Muscovy ducks during the broody and laying periods were used to investigate differentially expressed proteins (DEPs) by the iTRAQ-based proteomics a...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103401

    authors: Wu X,Pan X,Cao S,Xu F,Lan L,Zhang Y,Lian S,Yan M,Li A

    更新日期:2019-07-30 00:00:00

  • The olfactory bulb proteotype differs across frontotemporal dementia spectrum.

    abstract::Mild olfactory dysfunction has been observed in frontotemporal dementias (FTD). However, the underlying molecular mechanisms associated to this deficit are poorly understood. We applied quantitative proteomics to analyze pathological effects on the olfactory bulb (OB) from progressive supranuclear palsy (PSP) and fron...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2019.04.011

    authors: Lachén-Montes M,González-Morales A,Schvartz D,Zelaya MV,Ausin K,Fernández-Irigoyen J,Sánchez JC,Santamaría E

    更新日期:2019-06-15 00:00:00

  • A gel-based proteomic method reveals several protein pathway abnormalities in fetal Down syndrome brain.

    abstract::A large series of protein pathway components have been shown to be dysregulated in Down syndrome (DS) brain. No information about pathomechanisms linked to the trisomic state can be obtained from adult DS brain, however, as neurodegeneration occurs from the fourth decade. The aim of the study was to search for protein...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.01.009

    authors: Sun Y,Dierssen M,Toran N,Pollak DD,Chen WQ,Lubec G

    更新日期:2011-04-01 00:00:00