A Fusarium graminearum strain-comparative proteomic approach identifies regulatory changes triggered by agmatine.

Abstract:

UNLABELLED:Plant pathogens face different environmental clues depending on the stage of the infection cycle they are in. Fusarium graminearum infects small grain cereals producing trichothecenes type B (TB) that act as virulence factor in the interaction with the plant and have important food safety implications. This study addresses at the proteomic level the effect of an environmental stimulus (such as the presence of a polyamine like agmatine) possibly encountered by the fungus when it is already within the plant. Because biological diversity affects the proteome significantly, a multistrain (n=3) comparative approach was used to identify consistent effects caused on the fungus by the nitrogen source (agmatine or glutamic acid). Proteomics analyses were performed by the use of 2D-DIGE. Results showed that agmatine augmented TB production but not equally in all strains. The polyamine reshaped drastically the proteome of the fungus activating specific pathways linked to the translational control within the cell. Chromatin restructuring, ribosomal regulations, protein and mRNA processing enzymes were modulated by the agmatine stimulus as well as metabolic, structural and virulence-related proteins, suggesting the need to reshape specifically the fungal cell for TB production, a key step for the pathogen spread within the spike. BIOLOGICAL SIGNIFICANCE:Induction of toxin synthesis by plant compounds plays a crucial role in toxin contamination of food and feed, in particular trichothecenes type B produced mainly by F. graminearum on wheat. This work describes the level of diversity of 3 strains facing 2 toxin inducing plant derived compounds. This knowledge is of use for the research community on toxigenic Fusarium strains in cereals for understanding the role of fungal diversity in toxin inducibility. This work also suggests that environmental clues that can be found within the plant during infection (like different nitrogen compounds) are crucial stimuli for reshaping the proteome profile and consequently the specialization profiling of the fungus, ultimately leading to very different toxin contamination levels in the plant.

journal_name

J Proteomics

journal_title

Journal of proteomics

authors

Pasquali M,Serchi T,Cocco E,Leclercq CC,Planchon S,Guignard C,Renaut J,Hoffmann L

doi

10.1016/j.jprot.2015.11.010

subject

Has Abstract

pub_date

2016-03-30 00:00:00

pages

107-16

eissn

1874-3919

issn

1876-7737

pii

S1874-3919(15)30184-6

journal_volume

137

pub_type

杂志文章
  • The Drosophila melanogaster sperm proteome-II (DmSP-II).

    abstract::Advances in mass spectrometry technology, high-throughput proteomics and genome annotations have resulted in significant increases in our molecular understanding of sperm composition. Using improved separation and detection methods and an updated genome annotation, a re-analysis of the Drosophila melanogaster sperm pr...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2010.09.002

    authors: Wasbrough ER,Dorus S,Hester S,Howard-Murkin J,Lilley K,Wilkin E,Polpitiya A,Petritis K,Karr TL

    更新日期:2010-10-10 00:00:00

  • Sensing parasites: Proteomic and advanced bio-detection alternatives.

    abstract::Parasitic diseases have a great impact in human and animal health. The gold standard for the diagnosis of the majority of parasitic infections is still conventional microscopy, which presents important limitations in terms of sensitivity and specificity and commonly requires highly trained technicians. More accurate m...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2015.12.030

    authors: Sánchez-Ovejero C,Benito-Lopez F,Díez P,Casulli A,Siles-Lucas M,Fuentes M,Manzano-Román R

    更新日期:2016-03-16 00:00:00

  • Titanium dioxide as chemo-affinity chromatographic sorbent of biomolecular compounds--applications in acidic modification-specific proteomics.

    abstract::Characterization of the biomolecules involved in molecular processes occurring in biological systems such as the human cell remains central to biology, biotechnology, and medicine. One of the preferred methods of selectively purifying specific classes of biomolecules from complex biological matrices for further charac...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2011.07.024

    authors: Engholm-Keller K,Larsen MR

    更新日期:2011-12-21 00:00:00

  • Deep learning embedder method and tool for mass spectra similarity search.

    abstract::Spectral similarity calculation is widely used in protein identification tools and mass spectra clustering algorithms while comparing theoretical or experimental spectra. The performance of the spectral similarity calculation plays an important role in these tools and algorithms especially in the analysis of large-sca...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.104070

    authors: Qin C,Luo X,Deng C,Shu K,Zhu W,Griss J,Hermjakob H,Bai M,Perez-Riverol Y

    更新日期:2021-02-10 00:00:00

  • An in vivo characterization of colostrum protein uptake in porcine gut during early lactation.

    abstract::Understanding the bioactive roles of colostrum proteins has gained much attention, and in particular, their potential use in human and veterinary medicine has been extensively studied. However, studies of bioactivity have mainly been conducted in vitro, but it has not yet been well characterized at the individual prot...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2010.08.011

    authors: Danielsen M,Pedersen LJ,Bendixen E

    更新日期:2011-01-01 00:00:00

  • Venomics and antivenomics of Bothrops erythromelas from five geographic populations within the Caatinga ecoregion of northeastern Brazil.

    abstract::The Caatinga lancehead, Bothrops erythromelas, is a medically relevant species, responsible for most of the snakebite accidents in most parts of its distribution range in northeastern Brazil. The spectrum and geographic variability of its venom toxins were investigated applying a venomics approach to venom pools from ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.11.011

    authors: Jorge RJ,Monteiro HS,Gonçalves-Machado L,Guarnieri MC,Ximenes RM,Borges-Nojosa DM,Luna KP,Zingali RB,Corrêa-Netto C,Gutiérrez JM,Sanz L,Calvete JJ,Pla D

    更新日期:2015-01-30 00:00:00

  • Label-free proteomic analysis of placental proteins during Toxoplasma gondii infection.

    abstract::Toxoplasma gondii is a ubiquitous, obligate intracellular parasite capable of crossing the placental barrier and causing spontaneous abortion, preterm labor, or significant disease in the surviving neonate. To better understand molecular mechanisms underlying abnormal pregnancy outcomes caused by T. gondii, placental ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.08.013

    authors: Jiao F,Zhang D,Jiang M,Mi J,Liu X,Zhang H,Hu Z,Xu X,Hu X

    更新日期:2017-01-06 00:00:00

  • Comparative proteomic analysis of whole saliva from chronic periodontitis patients.

    abstract::Chronic periodontal disease is a chronic inflammatory process affecting tooth supporting tissues in the presence of pathogenic bacterial biofilm. There is some evidence for changes in the protein composition of whole saliva from chronic periodontitis patients, but there have been no studies using a proteomic approach....

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2010.02.018

    authors: Gonçalves Lda R,Soares MR,Nogueira FC,Garcia C,Camisasca DR,Domont G,Feitosa AC,Pereira Dde A,Zingali RB,Alves G

    更新日期:2010-05-07 00:00:00

  • Vitamin D-binding protein as a biomarker of active disease in acute intermittent porphyria.

    abstract:UNLABELLED:Acute intermittent porphyria (AIP) is an autosomal dominant metabolic disorder caused by a deficiency of hepatic porphobilinogen deaminase (PBGD). The disease is characterized by life threatening acute neurovisceral attacks. The aim of this study was to identify metabolites secreted by the hepatocytes that r...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2015.05.004

    authors: Serrano-Mendioroz I,Sampedro A,Mora MI,Mauleón I,Segura V,Enríquez de Salamanca R,Harper P,Sardh E,Corrales FJ,Fontanellas A

    更新日期:2015-09-08 00:00:00

  • Proteomic analysis of wheat contrasting genotypes reveals the interplay between primary metabolic and regulatory pathways in anthers under drought stress.

    abstract::Reproductive stage is very sensitive to various forms of environmental stresses such as drought stress. The proteomic analysis of anther during pollen development in response to drought stress was performed using a label-free quantitative shotgun proteomic technique to define the underlying molecular principles in two...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103895

    authors: Mehri N,Fotovat R,Mirzaei M,Fard EM,Parsamatin P,Hasan MT,Wu Y,Ghaffari MR,Salekdeh GH

    更新日期:2020-08-30 00:00:00

  • ComplexQuant: high-throughput computational pipeline for the global quantitative analysis of endogenous soluble protein complexes using high resolution protein HPLC and precision label-free LC/MS/MS.

    abstract::The experimental isolation and characterization of stable multi-protein complexes are essential to understanding the molecular systems biology of a cell. To this end, we have developed a high-throughput proteomic platform for the systematic identification of native protein complexes based on extensive fractionation of...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.10.001

    authors: Wan C,Liu J,Fong V,Lugowski A,Stoilova S,Bethune-Waddell D,Borgeson B,Havugimana PC,Marcotte EM,Emili A

    更新日期:2013-04-09 00:00:00

  • EuPA achieves visibility - an activity report on the first three years.

    abstract::Plans for the European Proteomics Association (EuPA) were conceived and established during 2004 and 2005, and culminated in the formal inception of the organisation during the 4th HUPO World Congress held in Munich in 2005. The mission from the outset has been three-tiered and is to: i) strengthen the national Proteom...

    journal_title:Journal of proteomics

    pub_type: 历史文章,杂志文章

    doi:10.1016/j.jprot.2008.03.004

    authors: Dunn MJ,Gil C,Kleinhammer C,Lottspeich F,Pennington S,Sanchez JC,Albar JP,Bini L,Corrales F,Corthals GL,Fountoulakis MM,Hoogland C,James P,Jensen ON,Jiménez C,Jorrín-Novo J,Kraus HJ,Meyer H,Noukakis D,Palagi PM,Pe

    更新日期:2008-04-30 00:00:00

  • Revealing the functional structure of a new PLA2 K49 from Bothriopsis taeniata snake venom employing automatic "de novo" sequencing using CID/HCD/ETD MS/MS analyses.

    abstract::Snake venoms are composed of approximately 90% of proteins with several pharmacological activities having high potential in research as biological tools. One of the most abundant compounds is phospholipases A2 (PLA2), which are the most studied venom protein due to their wide pharmacological activity. Using a combinat...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.10.020

    authors: Carregari VC,Dai J,Verano-Braga T,Rocha T,Ponce-Soto LA,Marangoni S,Roepstorff P

    更新日期:2016-01-10 00:00:00

  • Beyond single modification: Reanalysis of the acetylproteome of human sperm reveals widespread multiple modifications.

    abstract::Sperm is an ideal model for studying post-translational modifications since its transcriptional and translational activities are nearly silent. Thus, sperm functions are mainly regulated at the protein level, especially by means of post-translational modifications. Published proteomic datasets may contain valuable und...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.05.022

    authors: Zhou T,Xia X,Liu J,Wang G,Guo Y,Guo X,Wang X,Sha J

    更新日期:2015-08-03 00:00:00

  • Toward a standardized saliva proteome analysis methodology.

    abstract::The present study aimed the evaluation of saliva sample pre-treatment, in particular the sample clearance usually performed by centrifugation, to the contribution of salivary proteome and peptidome. Using in-gel and off-gel approaches, a large content of salivary proteins was detected in the pellet fraction that is us...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.05.045

    authors: Vitorino R,Guedes S,Manadas B,Ferreira R,Amado F

    更新日期:2012-09-18 00:00:00

  • Proteomics of wine additives: mining for the invisible via combinatorial peptide ligand libraries.

    abstract::Combinatorial peptide ligand libraries (CPLLs) have been adopted for harvesting and identifying traces of casein (used as a fining agent) present in white wines. Although minute amounts (200 microL) of CPLL beads are added to the entire content of a wine bottle (750 mL), they are able to sequester with high efficiency...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2010.05.010

    authors: Cereda A,Kravchuk AV,D'Amato A,Bachi A,Righetti PG

    更新日期:2010-08-05 00:00:00

  • iTRAQ-based quantitative proteomic analysis provides insights into strong broodiness in Muscovy duck (Cairina moschata) combined with metabolomics analysis.

    abstract::Much attention has been paid to the broodiness of the Muscovy duck, but the molecular mechanism of broodiness remains largely unknown. In this study, the ovary tissues of Muscovy ducks during the broody and laying periods were used to investigate differentially expressed proteins (DEPs) by the iTRAQ-based proteomics a...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103401

    authors: Wu X,Pan X,Cao S,Xu F,Lan L,Zhang Y,Lian S,Yan M,Li A

    更新日期:2019-07-30 00:00:00

  • Proteomic analysis of porcine alveolar macrophages infected with porcine circovirus type 2.

    abstract::Post-weaning multi-systemic wasting syndrome (PMWS), which is primarily caused by porcine circovirus type 2 (PCV2), is an emerging swine immunosuppressive disease. To characterize the interaction between target immune cells and PCV2, the differential proteomes of porcine alveolar macrophages, with and without PCV2 inf...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.03.039

    authors: Cheng S,Zhang M,Li W,Wang Y,Liu Y,He Q

    更新日期:2012-06-18 00:00:00

  • Proteomic analysis reveals the effects of melatonin on soybean root tips under flooding stress.

    abstract::Flooding constrains soybean growth, while melatonin enhances the ability of plants to tolerate abiotic stresses. To interpret the melatonin-mediated flooding response in soybeans, proteomic analysis was performed in root tips. Retarded growth and severe cell death were observed in flooded soybeans, but these phenotype...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.104064

    authors: Wang X,Li F,Chen Z,Yang B,Komatsu S,Zhou S

    更新日期:2021-02-10 00:00:00

  • Protein profiling identified dissociations between growth hormone-mediated longitudinal growth and bone mineralization in short prepubertal children.

    abstract::Growth hormone (GH) promotes longitudinal growth and bone mineralization. In this study, a proteomic approach was used to analyze the association between serum protein expression pattern and height-adjusted bone mineralization in short prepubertal children receiving GH treatment. Patterns of protein expression were co...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2010.08.007

    authors: Andersson B,Decker R,Nierop AF,Bosaeus I,Albertsson-Wikland K,Hellgren G

    更新日期:2011-01-01 00:00:00

  • Highly reproducible improved label-free quantitative analysis of cellular phosphoproteome by optimization of LC-MS/MS gradient and analytical column construction.

    abstract::Expanding the sequencing depth of the peptides with a statistically significant quantitative change derived from a biological stimulation is critical. Here we demonstrate that optimization of LC gradient and analytical column construction can reveal over 30,000 unique peptides and 23,000 phosphopeptides at high confid...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.06.013

    authors: Ahsan N,Belmont J,Chen Z,Clifton JG,Salomon AR

    更新日期:2017-08-08 00:00:00

  • A phosphoproteomic study reveals shp-1 cleavage reprograms LPS signaling via a PI-3K/NF-κB and mTORC1 related mechanism.

    abstract::The reprogrammed lipopolysaccharide (LPS) pathway has been reported to render patients more susceptible to the development of post-traumatic multiple organ dysfunction syndrome (MODS). To facilitate thorough understanding of this mechanism, a phosphoproteomic study was utilized to screen the potential signaling molecu...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.07.003

    authors: Xu E,Chen J,Wang Y,Ke Z,Luo S,Zou Z

    更新日期:2015-10-14 00:00:00

  • Proteomic identification of immunodominant chlamydial antigens in a mouse model.

    abstract::Chlamydia trachomatis is the most common bacterial sexually transmitted pathogen in the world. To identify new vaccine candidates a protein microarray was constructed by expressing the open reading frames (ORFs) from Chlamydia mouse pneumonitis (MoPn). C57BL/6, C3H/HeN and BALB/c mice were immunized either intranasall...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.08.017

    authors: Teng A,Cruz-Fisher MI,Cheng C,Pal S,Sun G,Ralli-Jain P,Molina DM,Felgner PL,Liang X,de la Maza LM

    更新日期:2012-12-21 00:00:00

  • LC-MS/MS analysis of visceral and subcutaneous adipose tissue proteomes in young goats with focus on innate immunity and inflammation related proteins.

    abstract:UNLABELLED:The endocrine role of adipose tissue and its involvement in several physiological and pathological processes are well recognized. Studies on human, mouse and rat adipose tissues have made clear that subcutaneous and visceral deposits play different roles, which is also reflected by different protein and gene...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.05.027

    authors: Restelli L,Codrea MC,Savoini G,Ceciliani F,Bendixen E

    更新日期:2014-08-28 00:00:00

  • Integrated physiological and chloroplast proteome analysis of wheat seedling leaves under salt and osmotic stresses.

    abstract::In this study, we performed an integrated physiological and chloroplast proteome analysis of wheat seedling leaves under salt and osmotic stresses by label-free based quantitative proteomic approach. Both salt and osmotic stresses significantly increased the levels of abscisic acid and methyl jasmonate and led to dama...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.104097

    authors: Zhu D,Luo F,Zou R,Liu J,Yan Y

    更新日期:2021-03-15 00:00:00

  • Unveiling alterative splice diversity from human oligodendrocyte proteome data.

    abstract::Oligodendrocytes produce and maintain the myelin sheath of axons in the central nervous system. Because misassembled myelin sheaths have been associated with brain disorders such as multiple sclerosis and schizophrenia, recent advances have been made towards the description of the oligodendrocyte proteome. The identif...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.05.023

    authors: Tavares R,Wajnberg G,Scherer NM,Pauletti BA,Cassoli JS,Ferreira CG,Paes Leme AF,de Araujo-Souza PS,Martins-de-Souza D,Passetti F

    更新日期:2017-01-16 00:00:00

  • Love me tender: an Omics window on the bovine meat tenderness network.

    abstract::Meat tenderness prediction is a challenging task, especially in Maremmana, an Italian autochtonous and highly appreciated beef breed. In the present study we reported an integrated proteomics, phosphoproteomics and metabolomics overview of meat tenderness in longissimus dorsi from 15 male Maremmana individuals, throug...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.02.013

    authors: D'Alessandro A,Rinalducci S,Marrocco C,Zolla V,Napolitano F,Zolla L

    更新日期:2012-07-19 00:00:00

  • Proteomic-components provide insights into the defensive secretion in termite workers of the soldierless genus Ruptitermes.

    abstract::Termite soldiers constitute the defensive frontline of the colonies, despite workers also perform such tasks, especially within the Neotropical Apicotermitinae, in which all species are soldierless. Workers of the genus Ruptitermes display an extreme form of defense, characterized by body rupture and release of a stic...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103622

    authors: Costa-Leonardo AM,da Silva IB,Poiani SB,Dos Santos-Pinto JRA,Esteves FG,da Silva LHB,Palma MS

    更新日期:2020-02-20 00:00:00

  • Evaluation of N-terminal labeling mass spectrometry for characterization of partially hydrolyzed gluten proteins.

    abstract::Gluten, a group of proteins found in wheat, barley, and rye, is the trigger of celiac disease, an immune disorder that affects about 1% of people worldwide. The toxicity of partially hydrolyzed gluten (PHG) in fermented products is less well understood due to the significant analytical challenges in PHG characterizati...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103538

    authors: Cao W,Baumert JL,Downs ML

    更新日期:2020-01-06 00:00:00

  • Proteome analysis of Bemisia tabaci suggests specific targets for RNAi mediated control.

    abstract:UNLABELLED:RNA interference offers effective control of several economically important insect pests. Bemisia tabaci is an important field crop pest, which causes significant yield loss worldwide. In our earlier study, we have demonstrated successful control of B. tabaci through transgenic plant mediated RNAi. However, ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.11.020

    authors: Mishra M,Saurabh S,Maurya R,Mudawal A,Parmar D,Singh PK

    更新日期:2016-01-30 00:00:00