Qualitative and quantitative peptidomic and proteomic approaches to phenotyping chicken semen.

Abstract:

UNLABELLED:Understanding of the avian male gamete biology is essential to improve the conservation of genetic resources and performance in farming. In this study, the chicken semen peptidome/proteome and the molecular phenotype related to sperm quality were investigated. Spermatozoa (SPZ) and corresponding seminal plasma (SP) from 11 males with different fertilizing capacity were analyzed using three quantitative strategies (fluid and intact cells MALDI-MS, SDS-PAGE combined to LC-MS/MS with spectral counting and XIC methods). Individual MALDI profiling in combination with top-down MS allowed to characterize specific profiles per male and to identify 16 biomolecules (e.g.VMO1, AvBD10 and AvBD9 including polymorphism). Qualitative analysis identified 1165 proteins mainly involved in oxidoreduction mechanisms, energy processes, proteolysis and protein localization. Comparative analyses between the most and the least fertile males were performed. The enzymes involved in energy metabolism, respiratory chain or oxido-reduction activity were over-represented in SPZ of the most fertile males. The SP of the most and the least fertile males differed also on many proteins (e.g. ACE, AvBD10 and AvBD9, NEL precursor, acrosin). Thus proteomic is a "phenomic molecular tool" that may help to discriminate avian males on their reproductive capacity. The data have been deposited with ProteomeXchange (identifiers PXD000287 and PXD001254). BIOLOGICAL SIGNIFICANCE:This peptidomic and proteomic study i) characterized for the first time the semen protein composition of the main domestic avian species (Gallus gallus) by analysis of ejaculated spermatozoa and corresponding seminal plasma; ii) established a characteristic molecular phenotype distinguishing semen and males at an individual level; and iii) proposedthe first evidence of biomarkers related to fertility.

journal_name

J Proteomics

journal_title

Journal of proteomics

authors

Labas V,Grasseau I,Cahier K,Gargaros A,Harichaux G,Teixeira-Gomes AP,Alves S,Bourin M,Gérard N,Blesbois E

doi

10.1016/j.jprot.2014.07.024

subject

Has Abstract

pub_date

2015-01-01 00:00:00

pages

313-35

eissn

1874-3919

issn

1876-7737

pii

S1874-3919(14)00385-6

journal_volume

112

pub_type

杂志文章
  • Secreted protein extract analyses present the plant pathogen Alternaria alternata as a suitable industrial enzyme toolbox.

    abstract::Lignocellulosic plant biomass is the most abundant carbon source in the planet, which makes it a potential substrate for biorefinery. It consists of polysaccharides and other molecules with applications in pharmaceutical, food and feed, cosmetics, paper and textile industries. The exploitation of these resources requi...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.02.012

    authors: García-Calvo L,Ullán RV,Fernández-Aguado M,García-Lino AM,Balaña-Fouce R,Barreiro C

    更新日期:2018-04-15 00:00:00

  • Exoproteome dynamics in Leishmania infantum.

    abstract:UNLABELLED:The exoproteome of Leishmania infantum is composed of parasite derived proteins present in the extracellular environment. Although the exoproteome might have a significant role in the precocious steps of infection little is known concerning its composition. We developed an approach enabling the in vitro reco...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.03.012

    authors: Santarém N,Racine G,Silvestre R,Cordeiro-da-Silva A,Ouellette M

    更新日期:2013-06-12 00:00:00

  • Protein composition of the outermost exosporium-like layer of Clostridium difficile 630 spores.

    abstract:UNLABELLED:Clostridium difficile spores are considered the morphotype of infection, transmission and persistence of C. difficile infections. There is a lack of information on the composition of the outermost exosporium layer of C. difficile spores. Using recently developed exosporium removal methods combined with MS/MS...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.03.035

    authors: Díaz-González F,Milano M,Olguin-Araneda V,Pizarro-Cerda J,Castro-Córdova P,Tzeng SC,Maier CS,Sarker MR,Paredes-Sabja D

    更新日期:2015-06-18 00:00:00

  • ITRAQ-based quantitative proteomic analysis of MG63 in response to HIF-1α inducers.

    abstract::Non-healing fractures constitute a serious clinical problem. HIF-1α is a crucial regulator in response to hypoxia and is proven to be pivotal in bone growth; however, the mechanism still needs further research. In this study, iTRAQ was used to study the effects of two HIF-1α inducers on the expression of proteins in M...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103558

    authors: Chen C,Hao X,Geng Z,Wang Z

    更新日期:2020-01-16 00:00:00

  • Arabidopsis proteome responses to the smoke-derived growth regulator karrikin.

    abstract:UNLABELLED:Karrikins are butenolide plant growth regulators in smoke from burning plant material that have proven ability to promote germination and seedling photomorphogenesis. However, the molecular mechanisms underlying these processes are unclear. Here we provide the first proteome-wide analysis of early responses ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.02.011

    authors: Baldrianová J,Černý M,Novák J,Jedelský PL,Divíšková E,Brzobohatý B

    更新日期:2015-04-29 00:00:00

  • Serological autoantibody profiling of type 1 diabetes by protein arrays.

    abstract:UNLABELLED:The need for biomarkers that illuminate the pathophysiology of type 1 diabetes (T1D), enhance early diagnosis and provide additional avenues for therapeutic intervention is well recognized in the scientific community. We conducted a proteome-scale, two-stage serological AAb screening followed by an independe...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,多中心研究,随机对照试验

    doi:10.1016/j.jprot.2013.10.018

    authors: Miersch S,Bian X,Wallstrom G,Sibani S,Logvinenko T,Wasserfall CH,Schatz D,Atkinson M,Qiu J,LaBaer J

    更新日期:2013-12-06 00:00:00

  • Revisiting Polybia paulista wasp venom using shotgun proteomics - Insights into the N-linked glycosylated venom proteins.

    abstract::The partial proteome of Polybia paulista wasp venom was previously reported elsewhere using a gel-dependent approach and resulted in the identification of a limited number of venom toxins. Here, we reinvestigated the P. paulista venom using a gel-free shotgun proteomic approach; the highly dynamic range of this approa...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.03.012

    authors: de Souza CL,Dos Santos-Pinto JRA,Esteves FG,Perez-Riverol A,Fernandes LGR,de Lima Zollner R,Palma MS

    更新日期:2019-05-30 00:00:00

  • Peptidomic approach identifies cruzioseptins, a new family of potent antimicrobial peptides in the splendid leaf frog, Cruziohyla calcarifer.

    abstract:UNLABELLED:Phyllomedusine frogs are an extraordinary source of biologically active peptides. At least 8 families of antimicrobial peptides have been reported in this frog clade, the dermaseptins being the most diverse. By a peptidomic approach, integrating molecular cloning, Edman degradation sequencing and tandem mass...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.06.017

    authors: Proaño-Bolaños C,Zhou M,Wang L,Coloma LA,Chen T,Shaw C

    更新日期:2016-09-02 00:00:00

  • EuPA achieves visibility - an activity report on the first three years.

    abstract::Plans for the European Proteomics Association (EuPA) were conceived and established during 2004 and 2005, and culminated in the formal inception of the organisation during the 4th HUPO World Congress held in Munich in 2005. The mission from the outset has been three-tiered and is to: i) strengthen the national Proteom...

    journal_title:Journal of proteomics

    pub_type: 历史文章,杂志文章

    doi:10.1016/j.jprot.2008.03.004

    authors: Dunn MJ,Gil C,Kleinhammer C,Lottspeich F,Pennington S,Sanchez JC,Albar JP,Bini L,Corrales F,Corthals GL,Fountoulakis MM,Hoogland C,James P,Jensen ON,Jiménez C,Jorrín-Novo J,Kraus HJ,Meyer H,Noukakis D,Palagi PM,Pe

    更新日期:2008-04-30 00:00:00

  • Earwax: A neglected body secretion or a step ahead in clinical diagnosis? A pilot study.

    abstract::This work combines the advantages of volatile metabolites profiling as a young growing research field with a non-invasive sampling technique using earwax "a neglected body secretion" for detection and monitoring of biomarkers for diabetes mellitus (types 1 and 2). Earwax samples were collected from 26 diabetic patient...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2017.03.005

    authors: Shokry E,de Oliveira AE,Avelino MAG,de Deus MM,Filho NRA

    更新日期:2017-04-21 00:00:00

  • Systematically integrated metabonomic-proteomic studies of Escherichia coli under ciprofloxacin stress.

    abstract::Many antibiotics are used to kill pathogenic Escherichia coli each year, resulting in an increase in the number of antibiotic-resistant strains. In this study, an integrated metabonomic-proteomic method was performed to systematically compare the profiles of metabolites and proteins with or without ciprofloxacin (CFLX...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.03.002

    authors: Li W,Zhang S,Wang X,Yu J,Li Z,Lin W,Lin X

    更新日期:2018-05-15 00:00:00

  • Dissecting the chloroplast proteome of chickpea (Cicer arietinum L.) provides new insights into classical and non-classical functions.

    abstract::Chloroplast, the energy organelle unique to plant cells, is a dynamic entity which integrates an array of metabolic pathways and serves as first level for energy conversion for the entire ecological hierarchy. Increasing amount of sequence data and evolution of mass spectrometric approaches has opened up new avenues f...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.06.005

    authors: Lande NV,Subba P,Barua P,Gayen D,Keshava Prasad TS,Chakraborty S,Chakraborty N

    更新日期:2017-08-08 00:00:00

  • Internal calibrants allow high accuracy peptide matching between MALDI imaging MS and LC-MS/MS.

    abstract::One of the important challenges for MALDI imaging mass spectrometry (MALDI-IMS) is the unambiguous identification of measured analytes. One way to do this is to match tryptic peptide MALDI-IMS m/z values with LC-MS/MS identified m/z values. Matching using current MALDI-TOF/TOF MS instruments is difficult due to the va...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.04.054

    authors: Gustafsson JOR,Eddes JS,Meding S,Koudelka T,Oehler MK,McColl SR,Hoffmann P

    更新日期:2012-08-30 00:00:00

  • Effect of the myosin light chain kinase inhibitor ML-7 on the proteome of hearts subjected to ischemia-reperfusion injury.

    abstract::In the development of ischemia/reperfusion (I/R) injury, the role of the myosin light chain (MLC) phosphorylation has been given increased consideration. ML-7, a MLC kinase inhibitor, has been shown to protect cardiac function from I/R, however the exact mechanism remains unclear. Isolated rat hearts were perfused und...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.06.016

    authors: Lin HB,Cadete VJ,Sawicka J,Wozniak M,Sawicki G

    更新日期:2012-09-18 00:00:00

  • The Trypanosoma rangeli trypomastigote surfaceome reveals novel proteins and targets for specific diagnosis.

    abstract:UNLABELLED:Sympatric distribution and sharing of hosts and antigens by Trypanosoma rangeli and Trypanosoma cruzi, the etiological agent of Chagas' disease, often incur in misdiagnosis and improper epidemiological inferences. Many secreted and surface proteins (SP) have been described as important antigens shared by the...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.02.011

    authors: Wagner G,Eiko Yamanaka L,Moura H,Denardin Lückemeyer D,Schlindwein AD,Hermes Stoco P,Bunselmeyer Ferreira H,Robert Barr J,Steindel M,Grisard EC

    更新日期:2013-04-26 00:00:00

  • 'Omics' techniques for identifying flooding-response mechanisms in soybean.

    abstract::Plant growth and productivity are adversely influenced by various environmental stresses, which often lead to reduced seedling growth and decreased crop yields. Plants respond to stressful conditions through changes in 'omics' profiles, including transcriptomics, proteomics, and metabolomics. Linking plant phenotype t...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2012.12.016

    authors: Komatsu S,Shirasaka N,Sakata K

    更新日期:2013-11-20 00:00:00

  • Proteomic analysis of ontogenetic and diet-related changes in venom composition of juvenile and adult Dusky Pigmy rattlesnakes (Sistrurus miliarius barbouri).

    abstract::Snake venom proteins show high levels of variation at the level of the individual yet the environmental and molecular mechanisms that generate this diversity remain unclear. Here we report the results of a controlled feeding experiment combined with proteomic analyses of periodically collected venom samples to assess ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.06.013

    authors: Gibbs HL,Sanz L,Chiucchi JE,Farrell TM,Calvete JJ

    更新日期:2011-09-06 00:00:00

  • Proteome analysis of aerobically and anaerobically grown Saccharomyces cerevisiae cells.

    abstract::The yeast Saccharomyces cerevisiae is able to grow under aerobic as well as anaerobic conditions. We and others previously found that transcription levels of approximately 500 genes differed more than two-fold when cells from anaerobic and aerobic conditions were compared. Here, we addressed the effect of anaerobic gr...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2008.11.012

    authors: Bruckmann A,Hensbergen PJ,Balog CI,Deelder AM,Brandt R,Snoek IS,Steensma HY,van Heusden GP

    更新日期:2009-01-30 00:00:00

  • Protein S-nitrosylation and denitrosylation in the mouse spinal cord upon injury of the sciatic nerve.

    abstract::Nitric oxide is a pain signaling molecule and exerts its influence through two primary pathways: by stimulation of soluble guanylylcyclase and by direct S-nitrosylation (SNO) of target proteins. We assessed in the spinal cord the SNO-proteome with two methods, two-dimensional S-nitrosothiol difference gel electrophore...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.05.006

    authors: Scheving R,Wittig I,Heide H,Albuquerque B,Steger M,Brandt U,Tegeder I

    更新日期:2012-07-16 00:00:00

  • Proteomic identification of immunodominant chlamydial antigens in a mouse model.

    abstract::Chlamydia trachomatis is the most common bacterial sexually transmitted pathogen in the world. To identify new vaccine candidates a protein microarray was constructed by expressing the open reading frames (ORFs) from Chlamydia mouse pneumonitis (MoPn). C57BL/6, C3H/HeN and BALB/c mice were immunized either intranasall...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.08.017

    authors: Teng A,Cruz-Fisher MI,Cheng C,Pal S,Sun G,Ralli-Jain P,Molina DM,Felgner PL,Liang X,de la Maza LM

    更新日期:2012-12-21 00:00:00

  • Combinatorial Peptide Ligand Library and two dimensional electrophoresis: new frontiers in the study of peritoneal dialysis effluent in pediatric patients.

    abstract:UNLABELLED:Peritoneal dialysis effluent (PDE) is a fluid resulting from the close contact of peritoneal dialysis (PD) solutions with the peritoneal membrane (PM) and represents a readily available material for the search of biomarkers of PM function or damage. Our laboratory has developed a method for the in-depth prot...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2015.01.003

    authors: Bruschi M,Candiano G,Santucci L,D'Ambrosio C,Scaloni A,Bonsano M,Ghiggeri GM,Verrina E

    更新日期:2015-02-26 00:00:00

  • Searching for specific motifs in affinity capture in proteome analysis.

    abstract::In analysing the red blood cell cytoplasmic proteome, in search for low abundance proteins, 15 amino acid (AA; Arg, Asn, Asp, Gln, Gly, His, Ile, Lys, Phe, Pro, Ser, Thr, Trp, Tyr, and Val) probes, used individually, captured a total of 787 unique gene products. Of those, 76 were found to be the common catch of all AA...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2009.04.001

    authors: Masseroli M,Bachi A,Boschetti E,Righetti PG

    更新日期:2009-07-21 00:00:00

  • Gender proteomics II. Which proteins in sexual organs.

    abstract::In continuity with the review dealing with differences by gender in non-sexual organs [1], this review collects data on the proteomes of the sexual organs as involved in human reproduction, under both physiological and pathological conditions. It also collects data on the tissue structures and biological fluids typica...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.10.001

    authors: Gianazza E,Miller I,Guerrini U,Palazzolo L,Parravicini C,Eberini I

    更新日期:2018-04-30 00:00:00

  • Glycoproteome in silkworm Bombyx mori and alteration by BmCPV infection.

    abstract::The biological functions of protein glycosylation have been increasingly recognized but not yet been very well understood, especially in lower organisms. Silkworm as a model lepidopteran insect and important economic insect, has been widely studied in life science, however, the current knowledge on the glycosylation s...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103802

    authors: Zhu F,Li D,Song D,Huo S,Ma S,Lü P,Liu X,Yao Q,Chen K

    更新日期:2020-06-30 00:00:00

  • Quantitative proteomics by 2DE and MALDI MS/MS uncover the effects of organic and conventional cropping methods on vegetable products.

    abstract::Organic farming aims to be environmentally sound, but the question as to whether organic cropping brings more nutritional benefits to farmers and consumers than the conventional cropping needs still to be answered. To gain insights into the molecular effects of organic farming we used proteome analysis to analyze cabb...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.06.021

    authors: Nawrocki A,Thorup-Kristensen K,Jensen ON

    更新日期:2011-11-18 00:00:00

  • Reproducibility of combinatorial peptide ligand libraries for proteome capture evaluated by selected reaction monitoring.

    abstract:UNLABELLED:Systems biology studies require the capability to quantify with high precision proteins spanning a broad range of abundances across multiple samples. However, the broad range of protein expression in cells often precludes the detection of low-abundance proteins. Different sample processing techniques can be ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.05.037

    authors: Di Girolamo F,Righetti PG,Soste M,Feng Y,Picotti P

    更新日期:2013-08-26 00:00:00

  • The variations in the nuclear proteome reveal new transcription factors and mechanisms involved in UV stress response in Pinus radiata.

    abstract:UNLABELLED:The importance of UV stress and its side-effects over the loss of plant productivity in forest species demands a deeper understanding of how pine trees respond to UV irradiation. Although the response to UV stress has been characterized at system and cellular levels, the dynamics within the nuclear proteome ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.03.003

    authors: Pascual J,Alegre S,Nagler M,Escandón M,Annacondia ML,Weckwerth W,Valledor L,Cañal MJ

    更新日期:2016-06-30 00:00:00

  • Proteome analysis of Bemisia tabaci suggests specific targets for RNAi mediated control.

    abstract:UNLABELLED:RNA interference offers effective control of several economically important insect pests. Bemisia tabaci is an important field crop pest, which causes significant yield loss worldwide. In our earlier study, we have demonstrated successful control of B. tabaci through transgenic plant mediated RNAi. However, ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.11.020

    authors: Mishra M,Saurabh S,Maurya R,Mudawal A,Parmar D,Singh PK

    更新日期:2016-01-30 00:00:00

  • Label-free proteomic analysis of PBMCs reveals gender differences in response to long-term antiretroviral therapy of HIV.

    abstract::The association of gender with the treatment outcome during long-term antiretroviral therapy (ART) in human immunodeficiency virus (HIV)-infected patients has been controversial. Here, we performed a comparative proteomic analysis of peripheral blood mononuclear cells (PBMC) by using a label-free shotgun method with n...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.05.033

    authors: Zhang L,Wang Z,Chen Y,Zhang C,Xie S,Cui Y,Wang Z

    更新日期:2015-08-03 00:00:00

  • Comparative proteomic analysis of BTH and BABA-induced resistance in pea (Pisum sativum) toward infection with pea rust (Uromyces pisi).

    abstract::Systemic acquired resistance (SAR) to Uromyces pisi in pea was studied by using a proteomic approach. Two-dimensional electrophoresis (2-DE) was used in order to compare the leaf proteome of two pea genotypes displaying different phenotypes (susceptible and partial resistance to the fungus), and in response to parasit...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.06.033

    authors: Barilli E,Rubiales D,Castillejo MÁ

    更新日期:2012-09-18 00:00:00