Glycoproteome in silkworm Bombyx mori and alteration by BmCPV infection.

Abstract:

:The biological functions of protein glycosylation have been increasingly recognized but not yet been very well understood, especially in lower organisms. Silkworm as a model lepidopteran insect and important economic insect, has been widely studied in life science, however, the current knowledge on the glycosylation status of its proteome is not satisfactory, and little is known about how pathogenic infections could affect the glycosylation status. This study performed large scale glycosite mapping for the silkworm Bombyx mori P50 strain, and quantitatively compared with that infected with the Bombyx mori cytoplasmic polyhedrosis virus (BmCPV). Some 400 glycoproteins were mapped in the silkworm, including N- and O-glycoproteins. Upon virus infection, the glycosylation levels of 41 N-glycopeptides were significantly changed, some of them belonging to transmembrane glycoproteins. The O-glycosylation profiles were also affected. In addition, 4 BmCPV-encoded viral proteins were found to be glycosylated for the first time, including polyhedrin, P101, VP3, and the NS protein. This study drafted a silkworm protein glycosylation map and underlined the potential impact of virus infection on glycosylation. SIGNIFICANCE: This study reveals the characteristics of the glycoproteome in the silkworm strain P50, and quantitatively compared to that infected by the virus BmCPV, which underlines the impact of virus infection on the alteration of protein glycosylation in invertebrate species. Our findings add to the knowledge of the post translational modifications of this model organism, and also uncovered for the first time the glycosylation status of the viral proteins expressed by BmCPV.

journal_name

J Proteomics

journal_title

Journal of proteomics

authors

Zhu F,Li D,Song D,Huo S,Ma S,Lü P,Liu X,Yao Q,Chen K

doi

10.1016/j.jprot.2020.103802

subject

Has Abstract

pub_date

2020-06-30 00:00:00

pages

103802

eissn

1874-3919

issn

1876-7737

pii

S1874-3919(20)30170-6

journal_volume

222

pub_type

杂志文章
  • Proteomics identifies molecular networks affected by tetradecylthioacetic acid and fish oil supplemented diets.

    abstract:UNLABELLED:Fish oil (FO) and tetradecylthioacetic acid (TTA) - a synthetic modified fatty acid have beneficial effects in regulating lipid metabolism. In order to dissect the mechanisms underlying the molecular action of those two fatty acids we have investigated the changes in mitochondrial protein expression in a lon...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.03.027

    authors: Wrzesinski K,R León I,Kulej K,Sprenger RR,Bjørndal B,Christensen BJ,Berge RK,Jensen ON,Rogowska-Wrzesinska A

    更新日期:2013-06-12 00:00:00

  • Microbial symbionts affect Pisum sativum proteome and metabolome under Didymella pinodes infection.

    abstract:UNLABELLED:The long cultivation of field pea led to an enormous diversity which, however, seems to hold just little resistance against the ascochyta blight disease complex. The potential of below ground microbial symbiosis to prime the immune system of Pisum for an upcoming pathogen attack has hitherto received little ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.03.018

    authors: Desalegn G,Turetschek R,Kaul HP,Wienkoop S

    更新日期:2016-06-30 00:00:00

  • Coupling of gel-based 2-DE and 1-DE shotgun proteomics approaches to dig deep into the leaf senescence proteome of Glycine max.

    abstract:UNLABELLED:Leaf senescence is the last stage of leaf development that re-mobilizes nutrients from the source to sink. Here, we have utilized the soybean as a model system to unravel senescence-associated proteins (SAPs). A comparative proteomics approach was used at two contrasting stages of leaf development, namely ma...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.07.025

    authors: Gupta R,Lee SJ,Min CW,Kim SW,Park KH,Bae DW,Lee BW,Agrawal GK,Rakwal R,Kim ST

    更新日期:2016-10-04 00:00:00

  • Quantitative phosphoproteomics reveals novel phosphorylation events in insulin signaling regulated by protein phosphatase 1 regulatory subunit 12A.

    abstract:UNLABELLED:Serine/threonine protein phosphatase 1 regulatory subunit 12A (PPP1R12A) modulates the activity and specificity of the catalytic subunit of protein phosphatase 1, regulating various cellular processes via dephosphorylation. Nonetheless, little is known about phosphorylation events controlled by PPP1R12A in s...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.06.010

    authors: Zhang X,Ma D,Caruso M,Lewis M,Qi Y,Yi Z

    更新日期:2014-09-23 00:00:00

  • The mammary gland in domestic ruminants: a systems biology perspective.

    abstract:UNLABELLED:Milk and dairy products are central elements in the human diet. It is estimated that 108kg of milk per year are consumed per person worldwide. Therefore, dairy production represents a relevant fraction of the economies of many countries, being cattle, sheep, goat, water buffalo, and other ruminants the main ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.09.012

    authors: Ferreira AM,Bislev SL,Bendixen E,Almeida AM

    更新日期:2013-12-06 00:00:00

  • A proteomic approach to compare saliva from individuals with and without oral leukoplakia.

    abstract:BACKGROUND:Oral leukoplakia is the most common potentially malignant disorder in the oral cavity and can precede carcinoma. This study aimed to identify possible oral leukoplakia salivary biomarkers. METHODS:Unstimulated saliva was collected from participants and protein concentration was determined. Proteins were the...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.07.029

    authors: Camisasca DR,da Rós Gonçalves L,Soares MR,Sandim V,Nogueira FC,Garcia CH,Santana R,de Oliveira SP,Buexm LA,de Faria PA,Dias FL,Pereira DA,Zingali RB,Alves G,Lourenço SQ

    更新日期:2017-01-16 00:00:00

  • Proteomic analysis of the abomasal mucosal response following infection by the nematode, Haemonchus contortus, in genetically resistant and susceptible sheep.

    abstract::Sheep have a variable ability to resist gastrointestinal nematode infection, but the key factors mediating this response are poorly defined. Here we report the first large-scale application of quantitative proteomic technologies to define proteins that are differentially abundant between sheep selectively bred to have...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.01.016

    authors: Nagaraj SH,Harsha HC,Reverter A,Colgrave ML,Sharma R,Andronicos N,Hunt P,Menzies M,Lees MS,Sekhar NR,Pandey A,Ingham A

    更新日期:2012-04-03 00:00:00

  • ComplexQuant: high-throughput computational pipeline for the global quantitative analysis of endogenous soluble protein complexes using high resolution protein HPLC and precision label-free LC/MS/MS.

    abstract::The experimental isolation and characterization of stable multi-protein complexes are essential to understanding the molecular systems biology of a cell. To this end, we have developed a high-throughput proteomic platform for the systematic identification of native protein complexes based on extensive fractionation of...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.10.001

    authors: Wan C,Liu J,Fong V,Lugowski A,Stoilova S,Bethune-Waddell D,Borgeson B,Havugimana PC,Marcotte EM,Emili A

    更新日期:2013-04-09 00:00:00

  • Quantitative iTRAQ LC-MS/MS proteomics reveals the cellular response to heterologous protein overexpression and the regulation of HAC1 in Pichia pastoris.

    abstract:UNLABELLED:The methylotrophic yeast Pichia pastoris is an attractive platform for a plethora of recombinant proteins. There is growing evidence that host cells producing recombinant proteins are exposed to a variety of cellular stresses resulting in the induction of the unfolded protein response (UPR) pathway. At prese...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.06.031

    authors: Lin XQ,Liang SL,Han SY,Zheng SP,Ye YR,Lin Y

    更新日期:2013-10-08 00:00:00

  • Moving from unsequenced to sequenced genome: reanalysis of the proteome of Leishmania donovani.

    abstract:UNLABELLED:The kinetoplastid protozoan parasite, Leishmania donovani, is the causative agent of kala azar or visceral leishmaniasis. Kala azar is a severe form of leishmaniasis that is fatal in the majority of untreated cases. Studies on proteomic analysis of L. donovani thus far have been carried out using homology-ba...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.04.021

    authors: Nirujogi RS,Pawar H,Renuse S,Kumar P,Chavan S,Sathe G,Sharma J,Khobragade S,Pande J,Modak B,Prasad TS,Harsha HC,Patole MS,Pandey A

    更新日期:2014-01-31 00:00:00

  • Drug localization in different lung cancer phenotypes by MALDI mass spectrometry imaging.

    abstract::Lung cancer is a common cause of cancer mortality in the world, largely due to the risk factor of tobacco smoking. The drug therapy at the molecular level includes targeting the epidermal growth factor receptor (EGFR) tyrosine kinase activity by using inhibitors, such as erlotinib (Tarceva) and gefitinib (Iressa). The...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.03.019

    authors: Marko-Varga G,Fehniger TE,Rezeli M,Döme B,Laurell T,Végvári A

    更新日期:2011-06-10 00:00:00

  • Identification and profiling of salinity stress-responsive proteins in Sorghum bicolor seedlings.

    abstract::Sorghum bicolor, a drought tolerant cereal crop, is not only an important food source in the semi arid/arid regions but also a potential model for studying and gaining a better understanding of the molecular mechanisms of drought and salt stress tolerance in cereals. In this study, seeds of a sweet sorghum variety, MN...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.05.038

    authors: Ngara R,Ndimba R,Borch-Jensen J,Jensen ON,Ndimba B

    更新日期:2012-07-16 00:00:00

  • Qualitative and quantitative peptidomic and proteomic approaches to phenotyping chicken semen.

    abstract:UNLABELLED:Understanding of the avian male gamete biology is essential to improve the conservation of genetic resources and performance in farming. In this study, the chicken semen peptidome/proteome and the molecular phenotype related to sperm quality were investigated. Spermatozoa (SPZ) and corresponding seminal plas...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.07.024

    authors: Labas V,Grasseau I,Cahier K,Gargaros A,Harichaux G,Teixeira-Gomes AP,Alves S,Bourin M,Gérard N,Blesbois E

    更新日期:2015-01-01 00:00:00

  • Quantitative label-free mass spectrometry using contralateral and adjacent breast tissues reveal differentially expressed proteins and their predicted impacts on pathways and cellular functions in breast cancer.

    abstract::Proteins play an essential role in the biological processes associated with cancer. Their altered expression levels can deregulate critical cellular pathways and interactive networks. In this study, the mass spectrometry-based label-free quantification followed by functional annotation was performed to investigate the...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.02.007

    authors: Gomig THB,Cavalli IJ,Souza RLR,Vieira E,Lucena ACR,Batista M,Machado KC,Marchini FK,Marchi FA,Lima RS,de Andrade Urban C,Cavalli LR,Ribeiro EMSF

    更新日期:2019-05-15 00:00:00

  • Comparative proteomics reveal new HrpX-regulated proteins of Xanthomonas oryzae pv. oryzae.

    abstract:UNLABELLED:Pathogenicity of the rice pathogenic bacterium Xanthomonas oryzae pv. oryzae depends on a Hrp (hypersensitive response and pathogenicity) type III secretion system; the expression of which is induced in planta. Expression of the hrp operons is under transcriptional control of two key regulatory proteins, Hrp...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.04.010

    authors: Robin GP,Ortiz E,Szurek B,Brizard JP,Koebnik R

    更新日期:2014-01-31 00:00:00

  • PlantPReS: A database for plant proteome response to stress.

    abstract:UNLABELLED:About 75% of plant yield potential has been estimated to be lost to environmental stresses, even in developed agricultures. To facilitate the biotechnological improvement of crop productivity, genes and proteins that control crop adaptation to a wide range of environments will need to be identified. Due to t...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.03.009

    authors: Mousavi SA,Pouya FM,Ghaffari MR,Mirzaei M,Ghaffari A,Alikhani M,Ghareyazie M,Komatsu S,Haynes PA,Salekdeh GH

    更新日期:2016-06-30 00:00:00

  • Gender proteomics II. Which proteins in sexual organs.

    abstract::In continuity with the review dealing with differences by gender in non-sexual organs [1], this review collects data on the proteomes of the sexual organs as involved in human reproduction, under both physiological and pathological conditions. It also collects data on the tissue structures and biological fluids typica...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.10.001

    authors: Gianazza E,Miller I,Guerrini U,Palazzolo L,Parravicini C,Eberini I

    更新日期:2018-04-30 00:00:00

  • Defining the transcriptomic and proteomic profiles of rat ageing skeletal muscle by the use of a cDNA array, 2D- and Blue native-PAGE approach.

    abstract::We defined the transcriptomic and proteomic profiles of rat ageing skeletal muscle using a combined cDNA array, 2D- and Blue native-PAGE approach. This was allowed to obtain an overview of the interrelated events leading to the transcriptome/proteome/mitoproteome changes likely to underlie the structural/metabolic fea...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2009.02.007

    authors: Lombardi A,Silvestri E,Cioffi F,Senese R,Lanni A,Goglia F,de Lange P,Moreno M

    更新日期:2009-05-02 00:00:00

  • Proteomic investigation of whole saliva in Wilson's disease.

    abstract::Wilson's disease is a rare inherited disorder of copper metabolism, manifesting hepatic, neurological and psychiatric symptoms. Early diagnosis is often unfeasible and a unique diagnostic test is currently inapplicable. We performed the qualitative/quantitative characterization of the salivary proteome/peptidome of 32...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.07.033

    authors: Cabras T,Sanna M,Manconi B,Fanni D,Demelia L,Sorbello O,Iavarone F,Castagnola M,Faa G,Messana I

    更新日期:2015-10-14 00:00:00

  • Shotgun proteomic analysis of the unicellular alga Ostreococcus tauri.

    abstract::Ostreococcus tauri is a unicellular green alga and amongst the smallest and simplest free-living eukaryotes. The O. tauri genome sequence was determined in 2006. Molecular, physiological and taxonomic data that has been generated since then highlight its potential as a simple model species for algae and plants. Howeve...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.05.028

    authors: Le Bihan T,Martin SF,Chirnside ES,van Ooijen G,Barrios-Llerena ME,O'Neill JS,Shliaha PV,Kerr LE,Millar AJ

    更新日期:2011-09-06 00:00:00

  • Comparative proteome analysis of acute myeloid leukemia with and without maturation.

    abstract::Acute myeloid leukemia (AML) is a severe, rapidly progressing disease triggered by blocking granulocyte or monocyte differentiation and maturation. Because of its heterogeneity, AML is divided into a number of subtypes. Unfortunately, so far very few correlations have been found between AML classification and its clin...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.07.030

    authors: Luczak M,Kaźmierczak M,Handschuh L,Lewandowski K,Komarnicki M,Figlerowicz M

    更新日期:2012-10-22 00:00:00

  • Identification of novel interacting partners of the NEDD4 ubiquitin ligase in mouse testis.

    abstract::Posttranslational modification by ubiquitination targets proteins for degradation, recycling, stabilization or altered trafficking, and as such can alter cellular signaling pathways. The substrate specificity of this multistep process is controlled by ubiquitin ligases, including those of the HECT domain-containing NE...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103830

    authors: Manning J,Windley SP,Sandow JJ,Shah SS,Western P,Wilhelm D,Kumar S

    更新日期:2020-07-15 00:00:00

  • Protein carbonylation and metal-catalyzed protein oxidation in a cellular perspective.

    abstract::Proteins can become oxidatively modified in many different ways, either by direct oxidation of amino acid side chains and protein backbone or indirectly by conjugation with oxidation products of polyunsaturated fatty acids and carbohydrates. While reversible oxidative modifications are thought to be relevant in physio...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2011.05.004

    authors: Møller IM,Rogowska-Wrzesinska A,Rao RS

    更新日期:2011-10-19 00:00:00

  • Highly reproducible improved label-free quantitative analysis of cellular phosphoproteome by optimization of LC-MS/MS gradient and analytical column construction.

    abstract::Expanding the sequencing depth of the peptides with a statistically significant quantitative change derived from a biological stimulation is critical. Here we demonstrate that optimization of LC gradient and analytical column construction can reveal over 30,000 unique peptides and 23,000 phosphopeptides at high confid...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.06.013

    authors: Ahsan N,Belmont J,Chen Z,Clifton JG,Salomon AR

    更新日期:2017-08-08 00:00:00

  • Comparative proteomic analysis of seedling leaves of different salt tolerant soybean genotypes.

    abstract::Salinity is one of the major environmental constraints limiting yield of crop plants in many semi-arid and arid regions around the world. To understand responses in soybean seedling to salt stress at proteomic level, the extracted proteins from seedling leaves of salt-sensitive genotype Jackson and salt-tolerant genot...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.11.026

    authors: Ma H,Song L,Shu Y,Wang S,Niu J,Wang Z,Yu T,Gu W,Ma H

    更新日期:2012-02-16 00:00:00

  • The proteomics of heavy metal hyperaccumulation by plants.

    abstract::Hyperaccumulators are distinguished from non-hyperaccumulators on the basis of their capacity to extract heavy metal ions from the soil, their more efficient root-to-shoot translocation of these ions and their greater ability to detoxify and sequester heavy metals in the shoot. The understanding of the mechanisms unde...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2012.12.006

    authors: Visioli G,Marmiroli N

    更新日期:2013-02-21 00:00:00

  • Proteomics survey of Solanaceae family: Current status and challenges ahead.

    abstract::Solanaceae is one of the major economically important families of higher plants and has played a central role in human nutrition since the dawn of human civilization. Therefore, researchers have always been interested in understanding the complex behavior of Solanaceae members to identify key transcripts, proteins or ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2017.05.016

    authors: Ghatak A,Chaturvedi P,Paul P,Agrawal GK,Rakwal R,Kim ST,Weckwerth W,Gupta R

    更新日期:2017-10-03 00:00:00

  • Proteomic changes in the heart of diet-induced pre-diabetic mice.

    abstract::The development of type 2 diabetes (T2D) is strongly associated with obesity. In humans, T2D increases the risk for end organ complications. Among these, heart disease has been ranked as the leading cause of death. We used a proteomic methodology to test the hypothesis that a pre-diabetic state generated by high-fat d...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.02.018

    authors: Cruz-Topete D,List EO,Okada S,Kelder B,Kopchick JJ

    更新日期:2011-05-01 00:00:00

  • Comparative proteomic analysis of BTH and BABA-induced resistance in pea (Pisum sativum) toward infection with pea rust (Uromyces pisi).

    abstract::Systemic acquired resistance (SAR) to Uromyces pisi in pea was studied by using a proteomic approach. Two-dimensional electrophoresis (2-DE) was used in order to compare the leaf proteome of two pea genotypes displaying different phenotypes (susceptible and partial resistance to the fungus), and in response to parasit...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.06.033

    authors: Barilli E,Rubiales D,Castillejo MÁ

    更新日期:2012-09-18 00:00:00

  • Comparative proteomic analysis reveals that caspase-1 and serine protease may be involved in silkworm resistance to Bombyx mori nuclear polyhedrosis virus.

    abstract::The silkworm Bombyx mori is of great economic value. The B. mori nuclear polyhedrosis virus (BmNPV) is one of the most common and severe pathogens for silkworm. Although certain immune mechanisms exist in silkworms, most silkworms are still susceptible to BmNPV infection. Interestingly, BmNPV infection resistance in s...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.04.015

    authors: Qin L,Xia H,Shi H,Zhou Y,Chen L,Yao Q,Liu X,Feng F,Yuan Y,Chen K

    更新日期:2012-06-27 00:00:00