Quantitative proteomics of the yeast Hsp70/Hsp90 interactomes during DNA damage reveal chaperone-dependent regulation of ribonucleotide reductase.

Abstract:

UNLABELLED:The highly conserved molecular chaperones Hsp90 and Hsp70 are indispensible for folding and maturation of a significant fraction of the proteome, including many proteins involved in signal transduction and stress response. To examine the dynamics of chaperone-client interactions after DNA damage, we applied quantitative affinity-purification mass spectrometry (AP-MS) proteomics to characterize interactomes of the yeast Hsp70 isoform Ssa1 and Hsp90 isoform Hsp82 before and after exposure to methyl methanesulfonate. Of 256 proteins identified and quantified via (16)O(/18)O labeling and LC-MS/MS, 142 are novel Hsp70/90 interactors. Nearly all interactions remained unchanged or decreased after DNA damage, but 5 proteins increased interactions with Ssa1 and/or Hsp82, including the ribonucleotide reductase (RNR) subunit Rnr4. Inhibiting Hsp70 or 90 chaperone activity destabilized Rnr4 in yeast and its vertebrate homolog hRMM2 in breast cancer cells. In turn, pre-treatment of cancer cells with chaperone inhibitors sensitized cells to the RNR inhibitor gemcitabine, suggesting a novel chemotherapy strategy. All MS data have been deposited in the ProteomeXchange with identifier PXD001284. BIOLOGICAL SIGNIFICANCE:This study provides the dynamic interactome of the yeast Hsp70 and Hsp90 under DNA damage which suggest key roles for the chaperones in a variety of signaling cascades. Importantly, the cancer drug target ribonucleotide reductase was shown to be a client of Hsp70 and Hsp90 in both yeast and breast cancer cells. As such, this study highlights the potential of a novel cancer therapeutic strategy that exploits the synergy of chaperone and ribonucleotide reductase inhibitors.

journal_name

J Proteomics

journal_title

Journal of proteomics

authors

Truman AW,Kristjansdottir K,Wolfgeher D,Ricco N,Mayampurath A,Volchenboum SL,Clotet J,Kron SJ

doi

10.1016/j.jprot.2014.09.028

subject

Has Abstract

pub_date

2015-01-01 00:00:00

pages

285-300

eissn

1874-3919

issn

1876-7737

pii

S1874-3919(14)00461-8

journal_volume

112

pub_type

杂志文章
  • Proteomic analysis of Yersinia enterocolitica biovar 1A under iron-rich and iron-poor conditions indicate existence of efficiently regulated mechanisms of iron homeostasis.

    abstract:UNLABELLED:The pathogenicity of Yersinia enterocolitica biovar 1A strains is controversial as these lack most of the known virulence factors. Acquisition of iron and presence of well-regulated iron homeostasis in bacteria represents an important virulence trait. Differential abundance of proteins was examined under iro...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.04.015

    authors: Kanaujia PK,Bajaj P,Kumar S,Singhal N,Virdi JS

    更新日期:2015-06-21 00:00:00

  • Intrinsic disorder and multiple phosphorylations constrain the evolution of the flightin N-terminal region.

    abstract::Flightin is a myosin binding phosphoprotein that originated in the ancestor to Pancrustacea ~500 MYA. In Drosophila melanogaster, flightin is essential for length determination and flexural rigidity of thick filaments. Here, we show that among 12 Drosophila species, the N-terminal region is characterized by low sequen...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.12.006

    authors: Lemas D,Lekkas P,Ballif BA,Vigoreaux JO

    更新日期:2016-03-01 00:00:00

  • Protein composition of the outermost exosporium-like layer of Clostridium difficile 630 spores.

    abstract:UNLABELLED:Clostridium difficile spores are considered the morphotype of infection, transmission and persistence of C. difficile infections. There is a lack of information on the composition of the outermost exosporium layer of C. difficile spores. Using recently developed exosporium removal methods combined with MS/MS...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.03.035

    authors: Díaz-González F,Milano M,Olguin-Araneda V,Pizarro-Cerda J,Castro-Córdova P,Tzeng SC,Maier CS,Sarker MR,Paredes-Sabja D

    更新日期:2015-06-18 00:00:00

  • A phosphoproteomic study reveals shp-1 cleavage reprograms LPS signaling via a PI-3K/NF-κB and mTORC1 related mechanism.

    abstract::The reprogrammed lipopolysaccharide (LPS) pathway has been reported to render patients more susceptible to the development of post-traumatic multiple organ dysfunction syndrome (MODS). To facilitate thorough understanding of this mechanism, a phosphoproteomic study was utilized to screen the potential signaling molecu...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.07.003

    authors: Xu E,Chen J,Wang Y,Ke Z,Luo S,Zou Z

    更新日期:2015-10-14 00:00:00

  • Proteomics of wine additives: mining for the invisible via combinatorial peptide ligand libraries.

    abstract::Combinatorial peptide ligand libraries (CPLLs) have been adopted for harvesting and identifying traces of casein (used as a fining agent) present in white wines. Although minute amounts (200 microL) of CPLL beads are added to the entire content of a wine bottle (750 mL), they are able to sequester with high efficiency...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2010.05.010

    authors: Cereda A,Kravchuk AV,D'Amato A,Bachi A,Righetti PG

    更新日期:2010-08-05 00:00:00

  • Quantifying proteins at microgram levels integrating gel electrophoresis and smartphone technology.

    abstract::A combination between gel electrophoresis and smartphone technology is applied for quantifying proteins in a serum sample. Electrophoresis not only allows one to separate different proteins but also to build-up a calibration curve for those proteins. To expand its applicability, a smartphone allows one to capture a ge...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.12.002

    authors: de Jesus JR,Guimarães IC,Arruda MAZ

    更新日期:2019-04-30 00:00:00

  • SWATH-MS based quantitative proteomics analysis to evaluate the antileishmanial effect of Commiphora wightii- Guggul and amphotericin B on a clinical isolate of Leishmania donovani.

    abstract::Drug resistance and relapse after treatment of visceral leishmaniasis (VL) with the chemotherapeutic drugs has impeded the VL elimination programme especially, in the endemic region of Bihar, India. Currently, Antimonials (Sbv) have been rendered obsolete (Bihar) as frequent treatment failure and relapse in Sbv treate...

    journal_title:Journal of proteomics

    pub_type: 已发布勘误

    doi:10.1016/j.jprot.2020.104017

    authors: Routaray CB,Bhor R,Bai S,Kadam NS,Jagtap S,Doshi PJ,Sundar S,Sawant S,Kulkarni MJ,Pai K

    更新日期:2021-02-10 00:00:00

  • Proteomic analysis reveals growth inhibition of soybean roots by manganese toxicity is associated with alteration of cell wall structure and lignification.

    abstract:UNLABELLED:Plant roots, the hidden half of plants, play a vital role in manganese (Mn) toxicity tolerance. However, molecular mechanisms underlying root adaptation to Mn toxicity remain largely unknown. In this study, soybean (Glycine max) was used to investigate alterations of root morphology and protein profiles in r...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.03.037

    authors: Chen Z,Yan W,Sun L,Tian J,Liao H

    更新日期:2016-06-30 00:00:00

  • Comparative proteomics reveal new HrpX-regulated proteins of Xanthomonas oryzae pv. oryzae.

    abstract:UNLABELLED:Pathogenicity of the rice pathogenic bacterium Xanthomonas oryzae pv. oryzae depends on a Hrp (hypersensitive response and pathogenicity) type III secretion system; the expression of which is induced in planta. Expression of the hrp operons is under transcriptional control of two key regulatory proteins, Hrp...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.04.010

    authors: Robin GP,Ortiz E,Szurek B,Brizard JP,Koebnik R

    更新日期:2014-01-31 00:00:00

  • Comparative bioinformatic and proteomic approaches to evaluate the outer membrane proteome of the fish pathogen Yersinia ruckeri.

    abstract::Yersinia ruckeri is the aetiological agent of enteric redmouth (ERM) disease and is responsible for significant economic losses in farmed salmonids. Enteric redmouth disease is associated primarily with rainbow trout (Oncorhynchus mykiss, Walbaum) but its incidence in Atlantic salmon (Salmo salar) is increasing. Outer...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.02.014

    authors: Ormsby MJ,Grahame E,Burchmore R,Davies RL

    更新日期:2019-05-15 00:00:00

  • MHC class I presented antigens from malignancies: A perspective on analytical characterization & immunogenicity.

    abstract::The field of cancer immunotherapy has expanded rapidly in the past few years, with many new approaches entering the clinic for T cell mediated killing of tumors. Several of these clinical approaches involve the exploitation of a CD8 + T cell response against MHC I presented tumor antigens. Here, we describe the types ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2018.04.021

    authors: Schmidt M,Lill JR

    更新日期:2019-01-16 00:00:00

  • 2D gels still have a niche in proteomics.

    abstract::With the rapid advance of MS-based proteomics one might think that 2D gel-based proteomics is dead. This is far from the truth. Current research has shown that there are still a number of places in the field of protein and molecular biology where 2D gels still play a leading role. The aim of this review is to highligh...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2013.01.010

    authors: Rogowska-Wrzesinska A,Le Bihan MC,Thaysen-Andersen M,Roepstorff P

    更新日期:2013-08-02 00:00:00

  • Quantitative proteomics analysis of differentially expressed proteins in ruptured and unruptured cerebral aneurysms by iTRAQ.

    abstract::The underlying pathophysiological mechanisms involved in cerebral aneurysms rupture remain unclear. This study was performed to investigate the differentially expressed proteins between ruptured and unruptured aneurysms using quantitative proteomics. The aneurysmal walls of six ruptured aneurysms and six unruptured an...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.05.001

    authors: Jiang P,Wu J,Chen X,Ning B,Liu Q,Li Z,Li M,Yang F,Cao Y,Wang R,Wang S

    更新日期:2018-06-30 00:00:00

  • Use of ribosomal proteins as biomarkers for identification of Flavobacterium psychrophilum by MALDI-TOF mass spectrometry.

    abstract::Matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF-MS) is a rapid methodology for identification of bacteria that is increasingly used in diagnostic laboratories. This work aimed at evaluating the potential of MALDI-TOF-MS for identification of the main serotypes of Flavobacterium ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.09.007

    authors: Fernández-Álvarez C,Torres-Corral Y,Santos Y

    更新日期:2018-01-06 00:00:00

  • Proteomic changes at 8 weeks after infection are associated with chronic liver pathology in experimental schistosomiasis.

    abstract::Chronic Schistosoma mansoni infection can present as a moderate or severe disease, termed intestinal or hepatosplenic schistosomiasis, respectively. Similarly, either moderate splenomegaly or hypersplenomegaly syndrome develops in CBA/J mice by 20weeks of infection and is similar to intestinal or hepatosplenic schisto...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.12.025

    authors: Manivannan B,Jordan TW,Secor WE,La Flamme AC

    更新日期:2012-03-16 00:00:00

  • An integrated transcriptomic- and proteomic-based approach to evaluate the human skin sensitization potential of glyphosate and its commercial agrochemical formulations.

    abstract::We investigated the skin sensitization hazard of glyphosate, the surfactant polyethylated tallow amine (POEA) and two commercial glyphosate-containing formulations using different omics-technologies based on a human dendritic cell (DC)-like cell line. First, the GARD™skin assay, investigating changes in the expression...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103647

    authors: Lindberg T,de Ávila RI,Zeller KS,Levander F,Eriksson D,Chawade A,Lindstedt M

    更新日期:2020-04-15 00:00:00

  • Application of proteomics to the assessment of the response to ionising radiation in Arabidopsis thaliana.

    abstract::Ionising radiation (IR) affects cellular and tissue function. However, the biological effects and interactions induced by IR are unclear. The aim of this study was to decipher the proteomic patterns that influence these pathways. The proteomes of Arabidopsis thaliana roots and rosettes were analysed in response to sub...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.03.025

    authors: Gicquel M,Esnault MA,Jorrín-Novo JV,Cabello-Hurtado F

    更新日期:2011-08-12 00:00:00

  • Bioactive peptides in plant-derived foodstuffs.

    abstract:UNLABELLED:A literature survey covering the presence of bioactive peptides in plant-derived foodstuffs is presented. Examples are given of plant peptides associated with a beneficial effect on human health. The main bioactive effects of these peptides are defined and their mechanism of action described, when known. Cur...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2016.03.048

    authors: Maestri E,Marmiroli M,Marmiroli N

    更新日期:2016-09-16 00:00:00

  • The correlation between cellular size and protein expression levels--normalization for global protein profiling.

    abstract::An automated image analysis system was used for protein quantification of 1862 human proteins in 47 cancer cell lines and 12 clinical cell samples using cell microarrays and immunohistochemistry. The analysis suggests that most proteins are expressed in a cell size dependent manner, and that normalization is required ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2008.06.014

    authors: Lundberg E,Gry M,Oksvold P,Kononen J,Andersson-Svahn H,Pontén F,Uhlén M,Asplund A

    更新日期:2008-10-07 00:00:00

  • Molecular mass sorting of proteome using hollow fiber flow field-flow fractionation for proteomics.

    abstract::Hollow fiber flow field-flow fractionation (HF FlFFF) has been demonstrated as a tool for pre-fractionating proteomes by differences in molecular mass (Mr), where the resulting protein fractions are subsequently digested and analyzed by shotgun proteomics using two-dimensional liquid chromatography-electrospray ioniza...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2008.02.001

    authors: Kim KH,Kang D,Koo HM,Moon MH

    更新日期:2008-04-30 00:00:00

  • Label-free proteomic analysis of placental proteins during Toxoplasma gondii infection.

    abstract::Toxoplasma gondii is a ubiquitous, obligate intracellular parasite capable of crossing the placental barrier and causing spontaneous abortion, preterm labor, or significant disease in the surviving neonate. To better understand molecular mechanisms underlying abnormal pregnancy outcomes caused by T. gondii, placental ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.08.013

    authors: Jiao F,Zhang D,Jiang M,Mi J,Liu X,Zhang H,Hu Z,Xu X,Hu X

    更新日期:2017-01-06 00:00:00

  • Functional characterization of RNA fragments using high-throughput interactome screening.

    abstract::Populations of small eukaryotic RNAs, in addition to relatively well recognized molecules such as miRNAs or siRNAs, also contain fragments derived from all classes of constitutively expressed non-coding RNAs. It has been recently demonstrated that the formation and accumulation of RNA fragments (RFs) is cell-/tissue-s...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.10.007

    authors: Jackowiak P,Lis A,Luczak M,Stolarek I,Figlerowicz M

    更新日期:2019-02-20 00:00:00

  • Cellular proteome alterations in response to enterovirus 71 and coxsackievirus A16 infections in neuronal and intestinal cell lines.

    abstract::Hand, foot and mouth disease is mainly caused by enterovirus A71 (EV-A71) and coxsackievirus A16 (CV-A16), but EV-A71 is also associated with severe neurological complications. Host factors may contribute to the different clinical outcomes of EV-A71 and CV-A16 infections. A neurovirulent EV-A71 strain (EV-A71/UH1) fro...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.05.016

    authors: Chan SY,Sam IC,Lai JK,Chan YF

    更新日期:2015-07-01 00:00:00

  • Arabidopsis proteome responses to the smoke-derived growth regulator karrikin.

    abstract:UNLABELLED:Karrikins are butenolide plant growth regulators in smoke from burning plant material that have proven ability to promote germination and seedling photomorphogenesis. However, the molecular mechanisms underlying these processes are unclear. Here we provide the first proteome-wide analysis of early responses ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.02.011

    authors: Baldrianová J,Černý M,Novák J,Jedelský PL,Divíšková E,Brzobohatý B

    更新日期:2015-04-29 00:00:00

  • Reductive chemical release of N-glycans as 1-amino-alditols and subsequent 9-fluorenylmethyloxycarbonyl labeling for MS and LC/MS analysis.

    abstract::Glycoproteins play pivotal roles in a series of biological processes and their glycosylation patterns need to be structurally and functionally characterized. However, the lack of versatile methods to release N-glycans as functionalized forms has been undermining glycomics studies. Here a novel method is developed for ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.06.002

    authors: Wang C,Qiang S,Jin W,Song X,Zhang Y,Huang L,Wang Z

    更新日期:2018-09-15 00:00:00

  • Proteomic analysis of liver in diet-induced Hyperlipidemic mice under Fructus Rosa roxburghii action.

    abstract::Fructus Rosae Roxburghii (FRR) has been considered as edible and medicinal fruit possessing antiatherosclerotic effect, but the mechanism is still unclear. HLP is material basis for AS formation. Under FRR action, TC, TG, LDL, HDL and ASI in serum were regulated to control level. Differentially expressed proteins in l...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103982

    authors: Song P,Shen X

    更新日期:2021-01-06 00:00:00

  • Proteomic analysis of Bacillus thuringiensis ΔphaC mutant BMB171/PHB(-1) reveals that the PHB synthetic pathway warrants normal carbon metabolism.

    abstract::A phaC knockout mutant from Bacillus thuringiensis (Bt) strain BMB171, named BMB171/PHB(-1), was constructed. A physiological and metabolic investigation and a proteomic analysis were conducted for both ΔphaC mutant and its parent strain. Grown in peptone medium with 5 gram glucose per liter as sole carbon source, BMB...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.06.002

    authors: Chen D,Xu D,Li M,He J,Gong Y,Wu D,Sun M,Yu Z

    更新日期:2012-09-18 00:00:00

  • Recombinant glycoproteins: The impact of cell lines and culture conditions on the generation of protein species.

    abstract:UNLABELLED:Glycosylation is the most complex post-translational modification. Thus, it contributes to versatile chemical compositions of proteins, leading to high amounts of protein species. The structural heterogeneity of glycoproteins was also described by the definition of glycoforms. We therefore introduced a new t...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.08.011

    authors: Rosenlöcher J,Sandig G,Kannicht C,Blanchard V,Reinke SO,Hinderlich S

    更新日期:2016-02-16 00:00:00

  • Internal calibrants allow high accuracy peptide matching between MALDI imaging MS and LC-MS/MS.

    abstract::One of the important challenges for MALDI imaging mass spectrometry (MALDI-IMS) is the unambiguous identification of measured analytes. One way to do this is to match tryptic peptide MALDI-IMS m/z values with LC-MS/MS identified m/z values. Matching using current MALDI-TOF/TOF MS instruments is difficult due to the va...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.04.054

    authors: Gustafsson JOR,Eddes JS,Meding S,Koudelka T,Oehler MK,McColl SR,Hoffmann P

    更新日期:2012-08-30 00:00:00

  • Global identification of transfer RNAs by liquid chromatography-mass spectrometry (LC-MS).

    abstract::Transfer ribonucleic acid (tRNA) is the non-coding RNA that links the processes of gene transcription with protein translation. While tRNAs have, individually, been studied for many years, few approaches exist for the global identification of tRNAs at the RNA and posttranscriptional RNA levels. Previously our lab intr...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.09.015

    authors: Wetzel C,Limbach PA

    更新日期:2012-06-27 00:00:00