Quantitative proteomics analysis of differentially expressed proteins in ruptured and unruptured cerebral aneurysms by iTRAQ.

Abstract:

:The underlying pathophysiological mechanisms involved in cerebral aneurysms rupture remain unclear. This study was performed to investigate the differentially expressed proteins between ruptured and unruptured aneurysms using quantitative proteomics. The aneurysmal walls of six ruptured aneurysms and six unruptured aneurysms were collected during the surgical operation. The isobaric tags for relative and absolute quantification (iTRAQ) were used to identify the differentially expressed proteins and western blotting was performed to validate the expression of the proteins of interest. Bioinformatics analysis of the differentially expressed proteins was also performed using the KEGG database and GO database. Between ruptured and unruptured aneurysms, 169 proteins were found differently expressed, including 74 up-regulated proteins and 95 down-regulated proteins with a fold change ≥ 2 and p value ≤ .05. KEGG pathway analysis revealed that phagosome, focal adhesion and ECM-receptor interaction were the most common pathways involved in aneurysm rupture. In addition, the differential expressions of ITGB3, CRABP1 and S100A9 were validated by western blotting. Through the iTRAQ method, we found that inflammatory responses and cell-matrix interactions may play a significant role in the rupture of cerebral aneurysms. These findings provide a basis for better understanding of pathophysiological mechanisms associated with aneurysm rupture. BIOLOGICAL SIGNIFICANCE:Intracranial aneurysm is the leading cause of life-threating subarachnoid hemorrhage which can cause 45% patients die within 30 days and severe morbidity in long-term survivors. With a high prevalence ranging from 1% to 5% in general population, cerebral aneurysm has become a widespread health hazard over past decades. Though great advances have been achieved in the diagnosis and treatment of this disease, the underlying pathophysiological mechanisms of aneurysm rupture remains undetermined and a lot of uncertainty still exists surrounding the treatment of unruptured cerebral aneurysms. Clarifying the mechanism associated with aneurysm rupture is important for estimating the rupture risk, as well as the development of new treatment strategy. Some previous studies have analyzed the molecular differences between ruptured and unruptured IAs at gene and mRNA levels, but further comprehensive proteomic studies are relatively rare. Here we performed a comparative proteomics study to investigate the differentially expressed proteins between ruptured IAs (RIAs) and unruptured IAs (UIAs). Results of our present study will provide more insights into the pathogenesis of aneurysm rupture at protein level. With a better understanding of pathophysiological mechanisms associated with aneurysm rupture, some noninvasive treatment strategies may be developed in the future.

journal_name

J Proteomics

journal_title

Journal of proteomics

authors

Jiang P,Wu J,Chen X,Ning B,Liu Q,Li Z,Li M,Yang F,Cao Y,Wang R,Wang S

doi

10.1016/j.jprot.2018.05.001

subject

Has Abstract

pub_date

2018-06-30 00:00:00

pages

45-52

eissn

1874-3919

issn

1876-7737

pii

S1874-3919(18)30195-7

journal_volume

182

pub_type

杂志文章
  • Drug localization in different lung cancer phenotypes by MALDI mass spectrometry imaging.

    abstract::Lung cancer is a common cause of cancer mortality in the world, largely due to the risk factor of tobacco smoking. The drug therapy at the molecular level includes targeting the epidermal growth factor receptor (EGFR) tyrosine kinase activity by using inhibitors, such as erlotinib (Tarceva) and gefitinib (Iressa). The...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.03.019

    authors: Marko-Varga G,Fehniger TE,Rezeli M,Döme B,Laurell T,Végvári A

    更新日期:2011-06-10 00:00:00

  • iTRAQ-based quantitative proteomic analysis provides insights into strong broodiness in Muscovy duck (Cairina moschata) combined with metabolomics analysis.

    abstract::Much attention has been paid to the broodiness of the Muscovy duck, but the molecular mechanism of broodiness remains largely unknown. In this study, the ovary tissues of Muscovy ducks during the broody and laying periods were used to investigate differentially expressed proteins (DEPs) by the iTRAQ-based proteomics a...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103401

    authors: Wu X,Pan X,Cao S,Xu F,Lan L,Zhang Y,Lian S,Yan M,Li A

    更新日期:2019-07-30 00:00:00

  • Quantitative proteomics analysis by iTRAQ revealed underlying changes in thermotolerance of Arthrospira platensis.

    abstract::Growth temperature is a critical factor that affects cultivation of Arthrospira platensis which is a type of cyanobacterium widely known as Spirulina that has significant commercial value. To investigate the molecular mechanism underlying the thermotolerance of Spirulina, differential protein expression profiling was ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.06.015

    authors: Chang R,Lv B,Li B

    更新日期:2017-08-08 00:00:00

  • Proteomic characterization of the mucosal pellicle formed in vitro on a cellular model of oral epithelium.

    abstract::The oral mucosal pellicle is a thin lubricating layer generated by the binding of saliva proteins on epithelial oral cells. The protein composition of this biological structure has been to date studied by targeted analyses of specific salivary proteins. In order to perform a more exhaustive proteome characterization o...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103797

    authors: Cabiddu G,Maes P,Hyvrier F,Olianas A,Manconi B,Brignot H,Canon F,Cabras T,Morzel M

    更新日期:2020-06-30 00:00:00

  • Integrated physiological and proteomic analysis reveals underlying response and defense mechanisms of Brachypodium distachyon seedling leaves under osmotic stress, cadmium and their combined stresses.

    abstract::Drought stress, a major abiotic stress, commonly occurs in metal-contaminated environments and affects crop growth and yield. In this study, we performed the first integrated phenotypic, physiological, and proteomic analysis of Brachypodium distachyon L. seedling leaves under polyethylene glycol (PEG) mock osmotic str...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.09.015

    authors: Cheng ZW,Chen ZY,Yan X,Bian YW,Deng X,Yan YM

    更新日期:2018-01-06 00:00:00

  • Urine metabolomic analysis in clear cell and papillary renal cell carcinoma: A pilot study.

    abstract::Renal cell carcinoma (RCC) is one of the most lethal type of tumors and is twice more frequent in men than in women. Initial symptoms are unspecific and belated thus increasing mortality. Moreover, current diagnostic and monitoring tools are harmful for the patient and unspecific in low-grade tumors. Therefore, novel ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103723

    authors: Oto J,Fernández-Pardo Á,Roca M,Plana E,Solmoirago MJ,Sánchez-González JV,Vera-Donoso CD,Martínez-Sarmiento M,España F,Navarro S,Medina P

    更新日期:2020-04-30 00:00:00

  • Twenty years of protein interaction studies for biological function deciphering.

    abstract::Intensive methodological developments and technology innovation have been devoted to protein-protein interaction studies over 20years. Genetic indirect assays and sophisticated large scale biochemical analyses have jointly contributed to the elucidation of protein-protein interactions, still with a lot of drawbacks de...

    journal_title:Journal of proteomics

    pub_type: 历史文章,杂志文章,评审

    doi:10.1016/j.jprot.2014.03.038

    authors: Legrain P,Rain JC

    更新日期:2014-07-31 00:00:00

  • Functional characterization of RNA fragments using high-throughput interactome screening.

    abstract::Populations of small eukaryotic RNAs, in addition to relatively well recognized molecules such as miRNAs or siRNAs, also contain fragments derived from all classes of constitutively expressed non-coding RNAs. It has been recently demonstrated that the formation and accumulation of RNA fragments (RFs) is cell-/tissue-s...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.10.007

    authors: Jackowiak P,Lis A,Luczak M,Stolarek I,Figlerowicz M

    更新日期:2019-02-20 00:00:00

  • A look behind the screens: characterization of the HSP70 family during osmotic stress in a non-model crop.

    abstract:UNLABELLED:High-throughput molecular analysis is challenging in a non-model species. Proteomics has a great potential to characterize non-model species. We went beyond the level of simply 'identifying' the proteins of interest during osmotic stress experiments in an allopolyploid crop (in casu banana) and focus on an i...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.01.014

    authors: Vanhove AC,Vermaelen W,Swennen R,Carpentier SC

    更新日期:2015-04-24 00:00:00

  • Reductive chemical release of N-glycans as 1-amino-alditols and subsequent 9-fluorenylmethyloxycarbonyl labeling for MS and LC/MS analysis.

    abstract::Glycoproteins play pivotal roles in a series of biological processes and their glycosylation patterns need to be structurally and functionally characterized. However, the lack of versatile methods to release N-glycans as functionalized forms has been undermining glycomics studies. Here a novel method is developed for ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.06.002

    authors: Wang C,Qiang S,Jin W,Song X,Zhang Y,Huang L,Wang Z

    更新日期:2018-09-15 00:00:00

  • Alteration of plasma membrane-bound redox systems of iron deficient pea roots by chitosan.

    abstract::Iron is essential for all living organisms and plays a crucial role in pathogenicity. This study presents the first proteome analysis of plasma membranes isolated from pea roots. Protein profiles of four different samples (+Fe, +Fe/Chitosan, -Fe, and -Fe/Chitosan) were compared by native IEF-PAGE combined with in-gel ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.01.012

    authors: Meisrimler CN,Planchon S,Renaut J,Sergeant K,Lüthje S

    更新日期:2011-08-12 00:00:00

  • Identification of differentially activated pathways in Phytophthora sojae at the mycelial, cyst, and oospore stages by TMT-based quantitative proteomics analysis.

    abstract::Phytophthora sojae is a widely distributed, destructive oomycete plant pathogen that has been developed as a model for oomycete biology. Given the important but limited reports on the comparison of the sexual and asexual stages in Phytophthora, we performed a large-scale quantitative proteomics study on two key asexua...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103776

    authors: Zhang C,Cui T,Zhang F,Xue Z,Miao J,Wang W,Liu X

    更新日期:2020-06-15 00:00:00

  • Protein nitrotryptophan: formation, significance and identification.

    abstract::Reactive nitrogen species are formed during a variety of disease states and have been shown to modify several amino acids on proteins. To date, the majority of research in this area has focused on the nitration of tyrosine residues to form 3-nitrotyrosine. However, emerging evidence suggests that another modification,...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2011.05.032

    authors: Nuriel T,Hansler A,Gross SS

    更新日期:2011-10-19 00:00:00

  • A phosphoproteomic study reveals shp-1 cleavage reprograms LPS signaling via a PI-3K/NF-κB and mTORC1 related mechanism.

    abstract::The reprogrammed lipopolysaccharide (LPS) pathway has been reported to render patients more susceptible to the development of post-traumatic multiple organ dysfunction syndrome (MODS). To facilitate thorough understanding of this mechanism, a phosphoproteomic study was utilized to screen the potential signaling molecu...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.07.003

    authors: Xu E,Chen J,Wang Y,Ke Z,Luo S,Zou Z

    更新日期:2015-10-14 00:00:00

  • Deregulation of smooth muscle cell cytoskeleton within the human atherosclerotic coronary media layer.

    abstract:UNLABELLED:Fatal events derived from coronary atherosclerosis are the major cause of mortality in the developed countries. Proteomic analysis of the atherosclerotic coronary artery has been mainly carried out with whole tissue extracts, making it difficult to distinguish the alterations present in every region of the p...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2013.01.032

    authors: de la Cuesta F,Zubiri I,Maroto AS,Posada M,Padial LR,Vivanco F,Alvarez-Llamas G,Barderas MG

    更新日期:2013-04-26 00:00:00

  • Secernin-1 as a novel prognostic biomarker candidate of synovial sarcoma revealed by proteomics.

    abstract::We aimed to develop prognostic biomarkers for synovial sarcoma employing a proteomic approach. We examined the proteomic profile of synovial sarcoma using two-dimensional difference gel electrophoresis (2D-DIGE). We identified 20 protein spots whose intensity was statistically different (p<0.01) between a group of eig...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.02.033

    authors: Suehara Y,Tochigi N,Kubota D,Kikuta K,Nakayama R,Seki K,Yoshida A,Ichikawa H,Hasegawa T,Kaneko K,Chuman H,Beppu Y,Kawai A,Kondo T

    更新日期:2011-05-16 00:00:00

  • Screening, discovery, and characterization of angiotensin-I converting enzyme inhibitory peptides derived from proteolytic hydrolysate of bitter melon seed proteins.

    abstract:UNLABELLED:In this study, new angiotensin-I converting enzyme (ACE) inhibitory peptides were comprehensively identified from a thermolysin digest of bitter melon (Momordica charantia) seed proteins. The hydrolysate was fractionated by reversed-phase high performance liquid chromatography (RP-HPLC), and the inhibitory a...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.08.018

    authors: Priyanto AD,Doerksen RJ,Chang CI,Sung WC,Widjanarko SB,Kusnadi J,Lin YC,Wang TC,Hsu JL

    更新日期:2015-10-14 00:00:00

  • Environmental toxicology and omics: A question of sex.

    abstract::Molecular initiating events and downstream transcriptional/proteomic responses provide valuable information for adverse outcome pathways, which can be used predict the effects of chemicals on physiological systems. There has been a paucity of research that addresses sex-specific expression profiling in toxicology and ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2017.09.010

    authors: Liang X,Feswick A,Simmons D,Martyniuk CJ

    更新日期:2018-02-10 00:00:00

  • Mass spectrometry imaging for drug distribution studies.

    abstract::Since its introduction mass spectrometry imaging (MSI) has proven to be a powerful tool for the localization of molecules in biological tissues. In drug discovery and development, understanding the distribution of both drug and its metabolites is of critical importance. Traditional methods suffer from a lack of spatia...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2012.07.028

    authors: Prideaux B,Stoeckli M

    更新日期:2012-08-30 00:00:00

  • Proteomics survey of Solanaceae family: Current status and challenges ahead.

    abstract::Solanaceae is one of the major economically important families of higher plants and has played a central role in human nutrition since the dawn of human civilization. Therefore, researchers have always been interested in understanding the complex behavior of Solanaceae members to identify key transcripts, proteins or ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2017.05.016

    authors: Ghatak A,Chaturvedi P,Paul P,Agrawal GK,Rakwal R,Kim ST,Weckwerth W,Gupta R

    更新日期:2017-10-03 00:00:00

  • Putrescine induces somatic embryo development and proteomic changes in embryogenic callus of sugarcane.

    abstract:UNLABELLED:Somatic embryogenesis, an important biotechnological technique, has great potential for application in sugarcane breeding and micropropagation. Polyamines have been associated with the regulation of several physiological processes, including the acquisition of embryogenic competence and somatic embryogenesis...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.09.029

    authors: Reis RS,Vale Ede M,Heringer AS,Santa-Catarina C,Silveira V

    更新日期:2016-01-01 00:00:00

  • Poppea's bath liquor: the secret proteome of she-donkey's milk.

    abstract::Donkey's milk is today categorized among the best mother's milk substitute for allergic newborns, due to its much reduced or absent allergenicity, coupled to excellent palatability and nutritional value. However, up to the present, only a handful of proteins had been characterized, just about the standard eight to ten...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.05.036

    authors: Cunsolo V,Muccilli V,Fasoli E,Saletti R,Righetti PG,Foti S

    更新日期:2011-09-06 00:00:00

  • Proteomic analysis of porcine alveolar macrophages infected with porcine circovirus type 2.

    abstract::Post-weaning multi-systemic wasting syndrome (PMWS), which is primarily caused by porcine circovirus type 2 (PCV2), is an emerging swine immunosuppressive disease. To characterize the interaction between target immune cells and PCV2, the differential proteomes of porcine alveolar macrophages, with and without PCV2 inf...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.03.039

    authors: Cheng S,Zhang M,Li W,Wang Y,Liu Y,He Q

    更新日期:2012-06-18 00:00:00

  • Subcellular fractionation of stored red blood cells reveals a compartment-based protein carbonylation evolution.

    abstract::During blood banking, erythrocytes undergo storage lesions, altering or degrading their metabolism, rheological properties, and protein content. Carbonylation is a hallmark of protein oxidative lesions, thus of red blood cell oxidative stress. In order to improve global erythrocyte protein carbonylation assessment, su...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.05.004

    authors: Delobel J,Prudent M,Rubin O,Crettaz D,Tissot JD,Lion N

    更新日期:2012-12-05 00:00:00

  • Quantitative iTRAQ LC-MS/MS proteomics reveals the cellular response to heterologous protein overexpression and the regulation of HAC1 in Pichia pastoris.

    abstract:UNLABELLED:The methylotrophic yeast Pichia pastoris is an attractive platform for a plethora of recombinant proteins. There is growing evidence that host cells producing recombinant proteins are exposed to a variety of cellular stresses resulting in the induction of the unfolded protein response (UPR) pathway. At prese...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.06.031

    authors: Lin XQ,Liang SL,Han SY,Zheng SP,Ye YR,Lin Y

    更新日期:2013-10-08 00:00:00

  • Could transformation mechanisms of acetylase-harboring pMdT1 plasmid be evaluated through proteomic tools in Escherichia coli?

    abstract:UNLABELLED:Escherichia coli is a commensal microorganism of the gastrointestinal tract of animals and humans and it is an excellent model organism for the study of antibiotic resistance mechanisms. The resistance transmission and other characteristics of bacteria are based on different types of gene transfer occurring ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.03.042

    authors: Magalhães P,Pinto L,Gonçalves A,Araújo JE,Santos HM,Capelo JL,Saénz Y,de Toro M,Torres C,Chambon C,Hébraud M,Poeta P,Igrejas G

    更新日期:2016-08-11 00:00:00

  • The use of omics profiling to improve outcomes of bone regeneration and osseointegration. How far are we from personalized medicine in dentistry?

    abstract::Increased life expectancy and broader restorative dental treatment alternatives for missing teeth have resulted in an increasing request of bone regeneration/augmentation procedures not only in healthy patients, but also in elderly and medically compromised ones. This is also combined with a growing demand for short i...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2018.01.017

    authors: Calciolari E,Donos N

    更新日期:2018-09-30 00:00:00

  • ComplexQuant: high-throughput computational pipeline for the global quantitative analysis of endogenous soluble protein complexes using high resolution protein HPLC and precision label-free LC/MS/MS.

    abstract::The experimental isolation and characterization of stable multi-protein complexes are essential to understanding the molecular systems biology of a cell. To this end, we have developed a high-throughput proteomic platform for the systematic identification of native protein complexes based on extensive fractionation of...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.10.001

    authors: Wan C,Liu J,Fong V,Lugowski A,Stoilova S,Bethune-Waddell D,Borgeson B,Havugimana PC,Marcotte EM,Emili A

    更新日期:2013-04-09 00:00:00

  • Peptidomic comparison and characterization of the major components of the venom of the giant ant Dinoponera quadriceps collected in four different areas of Brazil.

    abstract:UNLABELLED:Despite the noxious effects inflicted by Dinoponera ant's envenomation, the information about the biological properties and composition of their venom is still very limited. Ants from the genus Dinoponera are believed to be the world's largest living ants with a body length of 3cm. Their occurrence is restri...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.10.017

    authors: Cologna CT,Cardoso Jdos S,Jourdan E,Degueldre M,Upert G,Gilles N,Uetanabaro AP,Costa Neto EM,Thonart P,de Pauw E,Quinton L

    更新日期:2013-12-06 00:00:00

  • Transcriptome-facilitated proteomic characterization of rear-fanged snake venoms reveal abundant metalloproteinases with enhanced activity.

    abstract::High-throughput technologies were used to identify venom gland toxin expression and to characterize the venom proteomes of two rear-fanged snakes, Ahaetulla prasina (Asian Green Vine Snake) and Borikenophis portoricensis (Puerto Rican Racer). Sixty-nine complete toxin-coding transcripts from 12 venom protein superfami...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.08.004

    authors: Modahl CM,Frietze S,Mackessy SP

    更新日期:2018-09-15 00:00:00