Recombinant glycoproteins: The impact of cell lines and culture conditions on the generation of protein species.

Abstract:

UNLABELLED:Glycosylation is the most complex post-translational modification. Thus, it contributes to versatile chemical compositions of proteins, leading to high amounts of protein species. The structural heterogeneity of glycoproteins was also described by the definition of glycoforms. We therefore introduced a new term called "glycoprotein species" to join the two concepts from different fields of biology. In this study, we further determined the theoretical numbers of glycoprotein species of two recombinant glycoproteins - a therapeutical antibody and the human protease inhibitor alpha-1-antitrypsin (A1AT) - based on structural analysis of their N-glycans. Moreover, we showed that variations in the used cell lines and their cultivation conditions strongly influence the number of glycoprotein species in case of recombinant A1AT production. BIOLOGICAL SIGNIFICANCE:Protein glycosylation is a major source for the huge amount of protein species. This study extends the sight of protein species by the following contributions: 1) The new term "glycoprotein species" was defined to introduce the concept of glycoforms into the field. 2) An estimation of the number of potential glycoprotein species of two particular glycoproteins was given. 3) The influence of production conditions for recombinant glycoproteins on glycoprotein species generation was displayed.

journal_name

J Proteomics

journal_title

Journal of proteomics

authors

Rosenlöcher J,Sandig G,Kannicht C,Blanchard V,Reinke SO,Hinderlich S

doi

10.1016/j.jprot.2015.08.011

subject

Has Abstract

pub_date

2016-02-16 00:00:00

pages

85-92

eissn

1874-3919

issn

1876-7737

pii

S1874-3919(15)30102-0

journal_volume

134

pub_type

杂志文章
  • Developments for a growing Japanese patient population: facilitating new technologies for future health care.

    abstract::Lung cancer, COPD and cardiovascular diseases are highlighted as some of the most common disease that cause mortality, and for that reason are the most active areas for drug development. This perspective paper overviews the urgent need to develop a health care system for a rapidly growing patient population in Japan, ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2010.12.006

    authors: Kato H,Nishimura T,Ikeda N,Yamada T,Kondo T,Saijo N,Nishio K,Fujimoto J,Nomura M,Oda Y,Lindmark B,Maniwa J,Hibino H,Unno M,Ito T,Sawa Y,Tojo H,Egawa S,Edula G,Lopez M,Wigmore M,Inase N,Yoshizawa Y,Nomura F,

    更新日期:2011-05-16 00:00:00

  • Insights into the early stage of Pinus nigra Arn. somatic embryogenesis using discovery proteomics.

    abstract::The somatic embryogenesis in conifers represents a suitable model of plant regeneration system facilitating studies of fundamental aspects of an early development as well as in vitro micropropagation. The aim of our study was to deeper understand the somatic embryogenesis in the conifer tree Pinus nigra Arn. Comparati...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.05.013

    authors: Klubicová K,Uvácková L,Danchenko M,Nemecek P,Skultéty L,Salaj J,Salaj T

    更新日期:2017-10-03 00:00:00

  • The flavonoid (-)-epicatechin affects cytoskeleton proteins and functions in Entamoeba histolytica.

    abstract:UNLABELLED:Human amoebiasis is an intestinal disease with a global distribution. Due to reports of parasite resistance or susceptibility reduction to metronidazole treatment, there is a renewed interest for the search of new molecules with antiamoebic activity. The flavonoid (-)-epicatechin that was isolated from the M...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.05.017

    authors: Bolaños V,Díaz-Martínez A,Soto J,Rodríguez MA,López-Camarillo C,Marchat LA,Ramírez-Moreno E

    更新日期:2014-12-05 00:00:00

  • Proteomic expression profiles of virulent and avirulent strains of Listeria monocytogenes isolated from macrophages.

    abstract::Listeria monocytogenes is able to survive and proliferate within macrophages. In the current study, the ability of three L. monocytogenes strains (serovar 1/2a strain EGDe, serovar 4b strain F2365, and serovar 4a strain HCC23) to proliferate in the murine macrophage cell line J774.1 was analyzed. We found that the avi...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.05.008

    authors: Donaldson JR,Nanduri B,Pittman JR,Givaruangsawat S,Burgess SC,Lawrence ML

    更新日期:2011-09-06 00:00:00

  • Effect of diethylcarbamazine, butylated hydroxy anisole and methyl substituted chalcone on filarial parasite Setaria cervi: proteomic and biochemical approaches.

    abstract::For survival, parasite exerts several lines of defense of which drug neutralization is one of the major phenomena. Lack of phase I cytochrome P450 in some of the nematode render them depend on the phase II detoxification system involving GST as a major detoxifying enzymes. In present study, the antifilarial DEC, pheno...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.04.020

    authors: Rathaur S,Yadav M,Singh N,Singh A

    更新日期:2011-08-24 00:00:00

  • Quantitative proteomics using tandem mass tags in relation to the acute phase protein response in chicken challenged with Escherichia coli lipopolysaccharide endotoxin.

    abstract::The inflammatory response in chickens (Gallus Gallus domesticus) is an integral part of the bird's response to infection. Detailing proteomic changes occurring during infection would be beneficial to the poultry industry, offering opportunities for comparative pathophysiological analysis. The objective of this study w...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.08.009

    authors: Horvatić A,Guillemin N,Kaab H,McKeegan D,O'Reilly E,Bain M,Kuleš J,Eckersall PD

    更新日期:2019-02-10 00:00:00

  • Proteomics as a tool to explore human milk in health and disease.

    abstract::Proteins in milk have wide range of functions, they are carriers of minerals or chemically vulnerable and insoluble vitamins and other compounds, stabilisers of large aggregates or micelles of lipids, and components of both innate and acquired immune defence systems. Together with other components of milk, proteins ma...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2013.04.008

    authors: Roncada P,Stipetic LH,Bonizzi L,Burchmore RJ,Kennedy MW

    更新日期:2013-08-02 00:00:00

  • Interactome: Smart hematophagous triatomine salivary gland molecules counteract human hemostasis during meal acquisition.

    abstract::Human populations are constantly plagued by hematophagous insects' bites, in particular the triatomine insects that are vectors of the Trypanosoma cruzi agent in Chagas disease. The pharmacologically-active molecules present in the salivary glands of hematophagous insects are injected into the human skin to initiate a...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2012.05.001

    authors: de Araújo CN,Bussacos AC,Sousa AO,Hecht MM,Teixeira AR

    更新日期:2012-07-16 00:00:00

  • Identification of thioredoxin target disulfides in proteins released from barley aleurone layers.

    abstract::Thioredoxins are ubiquitous disulfide reductases involved in a wide range of cellular processes including DNA synthesis, oxidative stress response and apoptosis. In cereal seeds thioredoxins are proposed to facilitate the germination process by reducing disulfide bonds in storage proteins and other targets in the star...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2010.01.007

    authors: Hägglund P,Bunkenborg J,Yang F,Harder LM,Finnie C,Svensson B

    更新日期:2010-04-18 00:00:00

  • Comparative proteomic analysis of seedling leaves of different salt tolerant soybean genotypes.

    abstract::Salinity is one of the major environmental constraints limiting yield of crop plants in many semi-arid and arid regions around the world. To understand responses in soybean seedling to salt stress at proteomic level, the extracted proteins from seedling leaves of salt-sensitive genotype Jackson and salt-tolerant genot...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.11.026

    authors: Ma H,Song L,Shu Y,Wang S,Niu J,Wang Z,Yu T,Gu W,Ma H

    更新日期:2012-02-16 00:00:00

  • Towards muscle-specific meat color stability of Chinese Luxi yellow cattle: A proteomic insight into post-mortem storage.

    abstract::Searching for potential predictors of meat color is a challenging task for the meat industry. In this study, the relationship between meat color parameters and the sarcoplasmic proteome of M. longissimuss lumborum (LL) and M. psoas major (PM) from Chinese Luxi yellow cattle during post-mortem storage (0, 5, 10 and 15d...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.10.027

    authors: Wu W,Yu QQ,Fu Y,Tian XJ,Jia F,Li XM,Dai RT

    更新日期:2016-09-16 00:00:00

  • Quantitative proteomics analysis of differentially expressed proteins in ruptured and unruptured cerebral aneurysms by iTRAQ.

    abstract::The underlying pathophysiological mechanisms involved in cerebral aneurysms rupture remain unclear. This study was performed to investigate the differentially expressed proteins between ruptured and unruptured aneurysms using quantitative proteomics. The aneurysmal walls of six ruptured aneurysms and six unruptured an...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.05.001

    authors: Jiang P,Wu J,Chen X,Ning B,Liu Q,Li Z,Li M,Yang F,Cao Y,Wang R,Wang S

    更新日期:2018-06-30 00:00:00

  • Efferent intestinal lymph protein responses in nematode-resistant, -resilient and -susceptible lambs under challenge with Trichostrongylus colubriformis.

    abstract:UNLABELLED:The mechanisms underlying resistance to challenge by gastrointestinal nematode parasites in sheep are complex. Using DIGE, we profiled ovine lymph proteins in lambs with host resistance (R), resilience (Ri) or susceptibility (S) to a daily trickle challenge with the nematode Trichostrongylus colubriformis. E...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.07.017

    authors: Bond JJ,Pernthaner A,Zhang K,Rosanowski SM,Clerens S,Bisset SA,Sutherland IA,Koolaard JP,Hein WR

    更新日期:2014-09-23 00:00:00

  • Quantitative proteomics of the yeast Hsp70/Hsp90 interactomes during DNA damage reveal chaperone-dependent regulation of ribonucleotide reductase.

    abstract:UNLABELLED:The highly conserved molecular chaperones Hsp90 and Hsp70 are indispensible for folding and maturation of a significant fraction of the proteome, including many proteins involved in signal transduction and stress response. To examine the dynamics of chaperone-client interactions after DNA damage, we applied ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.09.028

    authors: Truman AW,Kristjansdottir K,Wolfgeher D,Ricco N,Mayampurath A,Volchenboum SL,Clotet J,Kron SJ

    更新日期:2015-01-01 00:00:00

  • Transcriptomics and proteomics-based analysis of heterosis on main economic traits of silkworm, Bombyx mori.

    abstract::The application of silkworm hybrids have promoted the innovation and development of agricultural technology, but the mechanism of heterosis in silkworm has not been explained clearly. In this study, the heterosis of silkworm in the aspects of body weight, silk gland and cocoon weight was investigated by means of silkw...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103941

    authors: Xiao R,Yuan Y,Zhu F,He S,Ge Q,Wang X,Taha R,Chen K

    更新日期:2020-10-30 00:00:00

  • Quantifying proteins at microgram levels integrating gel electrophoresis and smartphone technology.

    abstract::A combination between gel electrophoresis and smartphone technology is applied for quantifying proteins in a serum sample. Electrophoresis not only allows one to separate different proteins but also to build-up a calibration curve for those proteins. To expand its applicability, a smartphone allows one to capture a ge...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.12.002

    authors: de Jesus JR,Guimarães IC,Arruda MAZ

    更新日期:2019-04-30 00:00:00

  • Proteomic protease specificity profiling of clostridial collagenases reveals their intrinsic nature as dedicated degraders of collagen.

    abstract:UNLABELLED:Clostridial collagenases are among the most efficient degraders of collagen. Most clostridia are saprophytes and secrete proteases to utilize proteins in their environment as carbon sources; during anaerobic infections, collagenases play a crucial role in host colonization. Several medical and biotechnologic...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.10.004

    authors: Eckhard U,Huesgen PF,Brandstetter H,Overall CM

    更新日期:2014-04-04 00:00:00

  • Proteome analysis of aerobically and anaerobically grown Saccharomyces cerevisiae cells.

    abstract::The yeast Saccharomyces cerevisiae is able to grow under aerobic as well as anaerobic conditions. We and others previously found that transcription levels of approximately 500 genes differed more than two-fold when cells from anaerobic and aerobic conditions were compared. Here, we addressed the effect of anaerobic gr...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2008.11.012

    authors: Bruckmann A,Hensbergen PJ,Balog CI,Deelder AM,Brandt R,Snoek IS,Steensma HY,van Heusden GP

    更新日期:2009-01-30 00:00:00

  • Coupling of gel-based 2-DE and 1-DE shotgun proteomics approaches to dig deep into the leaf senescence proteome of Glycine max.

    abstract:UNLABELLED:Leaf senescence is the last stage of leaf development that re-mobilizes nutrients from the source to sink. Here, we have utilized the soybean as a model system to unravel senescence-associated proteins (SAPs). A comparative proteomics approach was used at two contrasting stages of leaf development, namely ma...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.07.025

    authors: Gupta R,Lee SJ,Min CW,Kim SW,Park KH,Bae DW,Lee BW,Agrawal GK,Rakwal R,Kim ST

    更新日期:2016-10-04 00:00:00

  • S-Nitrosylation in plants: pattern and function.

    abstract::During the last two decades nitric oxide (NO) has emerged as a new chemical messenger in plant biology, which is involved in many different physiological processes, such as plant defense, transpiration and gas exchange, seed germination, and root development. Protein S-nitrosylation, the post-translational modificatio...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2009.07.002

    authors: Lindermayr C,Durner J

    更新日期:2009-11-02 00:00:00

  • Proteomic analysis of wheat contrasting genotypes reveals the interplay between primary metabolic and regulatory pathways in anthers under drought stress.

    abstract::Reproductive stage is very sensitive to various forms of environmental stresses such as drought stress. The proteomic analysis of anther during pollen development in response to drought stress was performed using a label-free quantitative shotgun proteomic technique to define the underlying molecular principles in two...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103895

    authors: Mehri N,Fotovat R,Mirzaei M,Fard EM,Parsamatin P,Hasan MT,Wu Y,Ghaffari MR,Salekdeh GH

    更新日期:2020-08-30 00:00:00

  • Glycoproteomics of paclitaxel resistance in human epithelial ovarian cancer cell lines: towards the identification of putative biomarkers.

    abstract::Glycosylation, one of the most common post translational modifications (PTMs) of proteins, is often associated with carcinogenesis and tumor malignancy. Ovarian cancer is the sixth cause of cancer-related death in Western countries. Currently, it is treated by debulking surgery followed by chemotherapy based on paclit...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2009.11.012

    authors: Di Michele M,Marcone S,Cicchillitti L,Della Corte A,Ferlini C,Scambia G,Donati MB,Rotilio D

    更新日期:2010-03-10 00:00:00

  • Proteomic approach for identifying gonad differential proteins in the oyster (Crassostrea angulata) following food-chain contamination with HgCl2.

    abstract:UNLABELLED:Hg discharged into the environmental waters can generally be bioaccumulated, transformed and transmited by living organisms, thus resulting in the formation of Hg-toxicity food chains. The pathway and toxicology of food chain contaminated with environmental Hg are rarely revealed by proteomics. Here, we show...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.08.018

    authors: Zhang QH,Huang L,Zhang Y,Ke CH,Huang HQ

    更新日期:2013-12-06 00:00:00

  • Quantitative phosphoproteomics reveals novel phosphorylation events in insulin signaling regulated by protein phosphatase 1 regulatory subunit 12A.

    abstract:UNLABELLED:Serine/threonine protein phosphatase 1 regulatory subunit 12A (PPP1R12A) modulates the activity and specificity of the catalytic subunit of protein phosphatase 1, regulating various cellular processes via dephosphorylation. Nonetheless, little is known about phosphorylation events controlled by PPP1R12A in s...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.06.010

    authors: Zhang X,Ma D,Caruso M,Lewis M,Qi Y,Yi Z

    更新日期:2014-09-23 00:00:00

  • A proteomic analysis of p53-independent induction of apoptosis by bortezomib in 4T1 breast cancer cell line.

    abstract:UNLABELLED:The 26S proteasome is a proteolytic enzyme found in both cytoplasm and nucleus. In this study, we examined the differential expression of proteasome inhibitor bortezomib-induced proteins in p53-deficient 4T1 cells. It was found that GRP78 and TCEB2 were over-expressed in response to treatment with bortezomib...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.09.010

    authors: Yerlikaya A,Okur E,Baykal AT,Acılan C,Boyacı I,Ulukaya E

    更新日期:2015-01-15 00:00:00

  • Combined proteomics and transcriptomics identifies sting-related toxins of jellyfish Cyanea nozakii.

    abstract:UNLABELLED:Jellyfish sting has become a worldwide issue of critical concern to human health and safety in coastal areas in recent decades. Cyanea nozakii is one of the dominant blooming species and dangerous stingers in China. However, it remains unclear how many and what types of toxins are present in the venom. So, w...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.07.023

    authors: Li R,Yu H,Yue Y,Liu S,Xing R,Chen X,Li P

    更新日期:2016-10-04 00:00:00

  • Identification of prognostic protein biomarkers in childhood acute lymphoblastic leukemia (ALL).

    abstract::Early response to 7 days of prednisolone (PRED) treatment is one of the important prognostic factors in predicting eventual outcome in childhood acute lymphoblastic leukemia (ALL). Using proteomic tools and clinically important leukemia cell lines (REH, 697, Sup-B15, RS4; 11), we have identified potential prognostic p...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.02.034

    authors: Jiang N,Kham SK,Koh GS,Suang Lim JY,Ariffin H,Chew FT,Yeoh AE

    更新日期:2011-05-16 00:00:00

  • Direct characterization of target podocyte antigens and auto-antibodies in human membranous glomerulonephritis: Alfa-enolase and borderline antigens.

    abstract::The identification of glomerular auto-antigens in idiopathic human membranous glomerulonephritis (MGN) is a crucial step towards the definition of the mechanisms of the disease. Recent 'in vivo' studies demonstrated a heterogeneous composition of glomerular immune-deposits in MGN biopsies only a part of which have bee...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.05.021

    authors: Bruschi M,Carnevali ML,Murtas C,Candiano G,Petretto A,Prunotto M,Gatti R,Argentiero L,Magistroni R,Garibotto G,Scolari F,Ravani P,Gesualdo L,Allegri L,Ghiggeri GM

    更新日期:2011-09-06 00:00:00

  • Ability of the marine bacterium Pseudomonas fluorescens BA3SM1 to counteract the toxicity of CdSe nanoparticles.

    abstract:UNLABELLED:In the marine environment, bacteria from estuarine and coastal sediments are among the first targets of nanoparticle pollution; it is therefore relevant to improve the knowledge of interactions between bacteria and nanoparticles. In this work, the response of the marine bacterium Pseudomonas fluorescens BA3S...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.07.021

    authors: Poirier I,Kuhn L,Demortière A,Mirvaux B,Hammann P,Chicher J,Caplat C,Pallud M,Bertrand M

    更新日期:2016-10-04 00:00:00

  • Love me tender: an Omics window on the bovine meat tenderness network.

    abstract::Meat tenderness prediction is a challenging task, especially in Maremmana, an Italian autochtonous and highly appreciated beef breed. In the present study we reported an integrated proteomics, phosphoproteomics and metabolomics overview of meat tenderness in longissimus dorsi from 15 male Maremmana individuals, throug...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.02.013

    authors: D'Alessandro A,Rinalducci S,Marrocco C,Zolla V,Napolitano F,Zolla L

    更新日期:2012-07-19 00:00:00