Comparative Analysis and Classification of Cassette Exons and Constitutive Exons.

Abstract:

:Alternative splicing (AS) is a major engine that drives proteome diversity in mammalian genomes and is a widespread cause of human hereditary diseases. More than 95% of genes in the human genome are alternatively spliced, and the most common type of AS is the cassette exon. Recent discoveries have demonstrated that the cassette exon plays an important role in genetic diseases. To discover the formation mechanism of cassette exon events, we statistically analyze cassette exons and find that cassette exon events are strongly influenced by individual exons that are smaller in size and that have a lower GC content, more codon terminations, and weaker splice sites. We propose an improved random-forest-based hybrid method of distinguishing cassette exons from constitutive exons. Our method achieves a high accuracy in classifying cassette exons and constitutive exons and is verified to outperform previous approaches. It is anticipated that this study will facilitate a better understanding of the underlying mechanisms in cassette exons.

journal_name

Biomed Res Int

authors

Cui Y,Cai M,Stanley HE

doi

10.1155/2017/7323508

subject

Has Abstract

pub_date

2017-01-01 00:00:00

pages

7323508

eissn

2314-6133

issn

2314-6141

journal_volume

2017

pub_type

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