Optogenetic control of endogenous Ca(2+) channels in vivo.

Abstract:

:Calcium (Ca(2+)) signals that are precisely modulated in space and time mediate a myriad of cellular processes, including contraction, excitation, growth, differentiation and apoptosis. However, study of Ca(2+) responses has been hampered by technological limitations of existing Ca(2+)-modulating tools. Here we present OptoSTIM1, an optogenetic tool for manipulating intracellular Ca(2+) levels through activation of Ca(2+)-selective endogenous Ca(2+) release-activated Ca(2+) (CRAC) channels. Using OptoSTIM1, which combines a plant photoreceptor and the CRAC channel regulator STIM1 (ref. 4), we quantitatively and qualitatively controlled intracellular Ca(2+) levels in various biological systems, including zebrafish embryos and human embryonic stem cells. We demonstrate that activating OptoSTIM1 in the CA1 hippocampal region of mice selectively reinforced contextual memory formation. The broad utility of OptoSTIM1 will expand our mechanistic understanding of numerous Ca(2+)-associated processes and facilitate screening for drug candidates that antagonize Ca(2+) signals.

journal_name

Nat Biotechnol

journal_title

Nature biotechnology

authors

Kyung T,Lee S,Kim JE,Cho T,Park H,Jeong YM,Kim D,Shin A,Kim S,Baek J,Kim J,Kim NY,Woo D,Chae S,Kim CH,Shin HS,Han YM,Kim D,Heo WD

doi

10.1038/nbt.3350

subject

Has Abstract

pub_date

2015-10-01 00:00:00

pages

1092-6

issue

10

eissn

1087-0156

issn

1546-1696

pii

nbt.3350

journal_volume

33

pub_type

杂志文章
  • Synthetic muscle promoters: activities exceeding naturally occurring regulatory sequences.

    abstract::Relatively low levels of expression from naturally occurring promoters have limited the use of muscle as a gene therapy target. Myogenic restricted gene promoters display complex organization usually involving combinations of several myogenic regulatory elements. By random assembly of E-box, MEF-2, TEF-1, and SRE site...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/6981

    authors: Li X,Eastman EM,Schwartz RJ,Draghia-Akli R

    更新日期:1999-03-01 00:00:00

  • Identification and expression of isoflavone synthase, the key enzyme for biosynthesis of isoflavones in legumes.

    abstract::Isoflavones have drawn much attention because of their benefits to human health. These compounds, which are produced almost exclusively in legumes, have natural roles in plant defense and root nodulation. Isoflavone synthase catalyzes the first committed step of isoflavone biosynthesis, a branch of the phenylpropanoid...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/72671

    authors: Jung W,Yu O,Lau SM,O'Keefe DP,Odell J,Fader G,McGonigle B

    更新日期:2000-02-01 00:00:00

  • Canola engineered with a microalgal polyketide synthase-like system produces oil enriched in docosahexaenoic acid.

    abstract::Dietary omega-3 long-chain polyunsaturated fatty acids (LC-PUFAs), docosahexaenoic acid (DHA, C22:6) and eicosapentaenoic acid (EPA, C20:5) are usually derived from marine fish. Although production of both EPA and DHA has been engineered into land plants, including Arabidopsis, Camelina sativa and Brassica juncea, nei...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.3585

    authors: Walsh TA,Bevan SA,Gachotte DJ,Larsen CM,Moskal WA,Merlo PA,Sidorenko LV,Hampton RE,Stoltz V,Pareddy D,Anthony GI,Bhaskar PB,Marri PR,Clark LM,Chen W,Adu-Peasah PS,Wensing ST,Zirkle R,Metz JG

    更新日期:2016-08-01 00:00:00

  • Integration and expression of the high-molecular-weight glutenin subunit 1Ax1 gene into wheat.

    abstract::The unique bread-making characteristic of wheat flour is closely related to the elasticity and extensibility of the gluten proteins stored in the starchy endosperm, particularly the high-molecular-weight glutenin subunits (HMW-GS), which are important in determining gluten and dough elasticity. The quality of wheat cu...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt0996-1155

    authors: Altpeter F,Vasil V,Srivastava V,Vasil IK

    更新日期:1996-09-01 00:00:00

  • Human feeders support prolonged undifferentiated growth of human inner cell masses and embryonic stem cells.

    abstract::Previous reports have demonstrated the growth of undifferentiated human embryonic stem (HES) cells on mouse embryonic fibroblast (MEF) feeders and on laminin- or Matrigel-coated plastic surfaces supplemented with MEF-conditioned medium. These xenosupport systems run the risk of cross-transfer of animal pathogens from ...

    journal_title:Nature biotechnology

    pub_type:

    doi:10.1038/nbt726

    authors: Richards M,Fong CY,Chan WK,Wong PC,Bongso A

    更新日期:2002-09-01 00:00:00

  • Valuation--what you need to know.

    abstract::The basics of determining valuation will help you to understand what criteria matter most for investors. ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:

    authors: Frei P,Leleux B

    更新日期:2004-08-01 00:00:00

  • Enhanced phosphorus uptake in transgenic tobacco plants that overproduce citrate.

    abstract::Phosphorus (P) is one of the most important nutrients limiting agricultural production worldwide. In acid and alkaline soils, which make up over 70% of the world's arable land, P forms insoluble compounds that are not available for plant use. To reduce P deficiencies and ensure plant productivity, nearly 30 million to...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/74531

    authors: López-Bucio J,de La Vega OM,Guevara-García A,Herrera-Estrella L

    更新日期:2000-04-01 00:00:00

  • MALDI-TOF based mutation detection using tagged in vitro synthesized peptides.

    abstract::Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF) is a powerful method to quickly and accurately determine the masses of peptides. Most genetic analyses, however, begin with PCR amplification of a test sequence to generate DNA, which is more difficult than peptides to analyze by ...

    journal_title:Nature biotechnology

    pub_type:

    doi:10.1038/72013

    authors: Garvin AM,Parker KC,Haff L

    更新日期:2000-01-01 00:00:00

  • Prevention of systemic lupus erythematosus in MRL/lpr mice by administration of an immunoglobulin-binding peptide.

    abstract::Systemic lupus erythematosus (SLE) is a multisystem chronic inflammatory disease of unknown etiology that affects many organs, including the kidney. The presence of multiple autoantibodies and other immunological abnormalities point to basic defects in immunoregulatory controls that normally maintain self-tolerance. T...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/77296

    authors: Marino M,Ruvo M,De Falco S,Fassina G

    更新日期:2000-07-01 00:00:00

  • Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.

    abstract::CRISPR-Cas9-based genetic screens are a powerful new tool in biology. By simply altering the sequence of the single-guide RNA (sgRNA), one can reprogram Cas9 to target different sites in the genome with relative ease, but the on-target activity and off-target effects of individual sgRNAs can vary widely. Here, we use ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.3437

    authors: Doench JG,Fusi N,Sullender M,Hegde M,Vaimberg EW,Donovan KF,Smith I,Tothova Z,Wilen C,Orchard R,Virgin HW,Listgarten J,Root DE

    更新日期:2016-02-01 00:00:00

  • Conjugation site modulates the in vivo stability and therapeutic activity of antibody-drug conjugates.

    abstract::The reactive thiol in cysteine is used for coupling maleimide linkers in the generation of antibody conjugates. To assess the impact of the conjugation site, we engineered cysteines into a therapeutic HER2/neu antibody at three sites differing in solvent accessibility and local charge. The highly solvent-accessible si...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.2108

    authors: Shen BQ,Xu K,Liu L,Raab H,Bhakta S,Kenrick M,Parsons-Reponte KL,Tien J,Yu SF,Mai E,Li D,Tibbitts J,Baudys J,Saad OM,Scales SJ,McDonald PJ,Hass PE,Eigenbrot C,Nguyen T,Solis WA,Fuji RN,Flagella KM,Patel D,Spe

    更新日期:2012-01-22 00:00:00

  • Biomagnetic isolation of antigen-specific CD8+ T cells usable in immunotherapy.

    abstract::Isolating antigen-specific T lymphocytes is hampered by the low frequency of the cells and the low affinity between T-cell receptors (TCR) and antigen. We describe the isolation and purification of antigen-specific CD8+ T lymphocytes from mixed T-cell populations. Magnetic beads coated with major histocompatibility co...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt0398-281

    authors: Luxembourg AT,Borrow P,Teyton L,Brunmark AB,Peterson PA,Jackson MR

    更新日期:1998-03-01 00:00:00

  • Synthetic CD4 exocyclics inhibit binding of human immunodeficiency virus type 1 envelope to CD4 and virus replication in T lymphocytes.

    abstract::CD4 functions as a major T-cell surface receptor for human immunodeficiency virus by binding the human immunodeficiency virus type 1 (HIV-1) envelope protein gp120 with relatively high affinity. We have developed constrained aromatically modified analogs of the secondary structures of the first domain of CD4 in order ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt0297-150

    authors: Zhang X,Gaubin M,Briant L,Srikantan V,Murali R,Saragovi U,Weiner D,Devaux C,Autiero M,Piatier-Tonneau D,Greene MI

    更新日期:1997-02-01 00:00:00

  • Efficient siRNA delivery into primary cells by a peptide transduction domain-dsRNA binding domain fusion protein.

    abstract::RNA interference (RNAi) induced by short interfering RNA (siRNA) allows for discovery research and large-scale screening; however, owing to their size and anionic charge, siRNAs do not readily enter cells. Current approaches do not deliver siRNAs into a high percentage of primary cells without cytotoxicity. Here we re...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.1541

    authors: Eguchi A,Meade BR,Chang YC,Fredrickson CT,Willert K,Puri N,Dowdy SF

    更新日期:2009-06-01 00:00:00

  • Targeting by affinity-matured recombinant antibody fragments of an angiogenesis associated fibronectin isoform.

    abstract::The oncofetal fibronectin (B-FN) isoform is present in vessels of neoplastic tissues during angiogenesis but not in mature vessels. B-FN could therefore provide a target for diagnostic imaging and therapy of cancer. Phage display libraries have been used to isolate human antibody fragments with pan-species recognition...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt1197-1271

    authors: Neri D,Carnemolla B,Nissim A,Leprini A,Querzè G,Balza E,Pini A,Tarli L,Halin C,Neri P,Zardi L,Winter G

    更新日期:1997-11-01 00:00:00

  • An integrated mass spectrometric and computational framework for the analysis of protein interaction networks.

    abstract::Biological systems are controlled by protein complexes that associate into dynamic protein interaction networks. We describe a strategy that analyzes protein complexes through the integration of label-free, quantitative mass spectrometry and computational analysis. By evaluating peptide intensity profiles throughout t...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt1289

    authors: Rinner O,Mueller LN,Hubálek M,Müller M,Gstaiger M,Aebersold R

    更新日期:2007-03-01 00:00:00

  • Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis.

    abstract::The specificity of biological regulatory mechanisms relies on selective interactions between different proteins in different cell types and in response to different extracellular signals. We describe a bimolecular fluorescence complementation (BiFC) approach for the simultaneous visualization of multiple protein inter...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt816

    authors: Hu CD,Kerppola TK

    更新日期:2003-05-01 00:00:00

  • Fingerprinting polysaccharides with single-molecule atomic force microscopy.

    abstract::We report the use of an atomic force microscopy (AFM)-based force spectroscopy technique to identify, at the single-molecule level, the components of mixtures of polysaccharides. Previously, we showed that the elasticity of certain types of polysaccharides is governed by force-induced conformational transitions of the...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/85712

    authors: Marszalek PE,Li H,Fernandez JM

    更新日期:2001-03-01 00:00:00

  • A policy approach to the development of molecular diagnostic tests.

    abstract::Efficiently generating evidence of clinical utility is a major challenge for ensuring clinical adoption of valuable diagnostics. A new approach to reimbursement in the United States offers a balance between evidence and incentives for molecular diagnostic tests. ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt1110-1157

    authors: Schulman KA,Tunis SR

    更新日期:2010-11-01 00:00:00

  • Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape.

    abstract::We describe protein interaction quantitation (PIQ), a computational method for modeling the magnitude and shape of genome-wide DNase I hypersensitivity profiles to identify transcription factor (TF) binding sites. Through the use of machine-learning techniques, PIQ identified binding sites for >700 TFs from one DNase ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.2798

    authors: Sherwood RI,Hashimoto T,O'Donnell CW,Lewis S,Barkal AA,van Hoff JP,Karun V,Jaakkola T,Gifford DK

    更新日期:2014-02-01 00:00:00

  • Targeted isolation and cultivation of uncultivated bacteria by reverse genomics.

    abstract::Most microorganisms from all taxonomic levels are uncultured. Single-cell genomes and metagenomes continue to increase the known diversity of Bacteria and Archaea; however, while 'omics can be used to infer physiological or ecological roles for species in a community, most of these hypothetical roles remain unvalidate...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/s41587-019-0260-6

    authors: Cross KL,Campbell JH,Balachandran M,Campbell AG,Cooper SJ,Griffen A,Heaton M,Joshi S,Klingeman D,Leys E,Yang Z,Parks JM,Podar M

    更新日期:2019-11-01 00:00:00

  • Reengineering a receptor footprint of adeno-associated virus enables selective and systemic gene transfer to muscle.

    abstract::Reengineering the receptor footprints of adeno-associated virus (AAV) isolates may yield variants with improved properties for clinical applications. We generated a panel of synthetic AAV2 vectors by replacing a hexapeptide sequence in a previously identified heparan sulfate receptor footprint with corresponding resid...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.1599

    authors: Asokan A,Conway JC,Phillips JL,Li C,Hegge J,Sinnott R,Yadav S,DiPrimio N,Nam HJ,Agbandje-McKenna M,McPhee S,Wolff J,Samulski RJ

    更新日期:2010-01-01 00:00:00

  • Applications of CRISPR technologies in research and beyond.

    abstract::Programmable DNA cleavage using CRISPR-Cas9 enables efficient, site-specific genome engineering in single cells and whole organisms. In the research arena, versatile CRISPR-enabled genome editing has been used in various ways, such as controlling transcription, modifying epigenomes, conducting genome-wide screens and ...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.3659

    authors: Barrangou R,Doudna JA

    更新日期:2016-01-01 00:00:00

  • Author Correction: Plants with genetically encoded autoluminescence.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature biotechnology

    pub_type: 已发布勘误

    doi:10.1038/s41587-020-0578-0

    authors: Mitiouchkina T,Mishin AS,Somermeyer LG,Markina NM,Chepurnyh TV,Guglya EB,Karataeva TA,Palkina KA,Shakhova ES,Fakhranurova LI,Chekova SV,Tsarkova AS,Golubev YV,Negrebetsky VV,Dolgushin SA,Shalaev PV,Shlykov D,Melnik OA,

    更新日期:2020-08-01 00:00:00

  • Large multiple sequence alignments with a root-to-leaf regressive method.

    abstract::Multiple sequence alignments (MSAs) are used for structural1,2 and evolutionary predictions1,2, but the complexity of aligning large datasets requires the use of approximate solutions3, including the progressive algorithm4. Progressive MSA methods start by aligning the most similar sequences and subsequently incorpora...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/s41587-019-0333-6

    authors: Garriga E,Di Tommaso P,Magis C,Erb I,Mansouri L,Baltzis A,Laayouni H,Kondrashov F,Floden E,Notredame C

    更新日期:2019-12-01 00:00:00

  • An electrical probe of protein-DNA interactions on DNA-modified surfaces.

    abstract::DNA charge transport chemistry is found to provide a sensitive method for probing protein-dependent changes in DNA structure and enzymatic reactions. Here we describe the development of an electrochemical assay of protein binding to DNA-modified electrodes based upon the detection of associated perturbations in DNA ba...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt0302-282

    authors: Boon EM,Salas JE,Barton JK

    更新日期:2002-03-01 00:00:00

  • Multiplexed and scalable super-resolution imaging of three-dimensional protein localization in size-adjustable tissues.

    abstract::The biology of multicellular organisms is coordinated across multiple size scales, from the subnanoscale of molecules to the macroscale, tissue-wide interconnectivity of cell populations. Here we introduce a method for super-resolution imaging of the multiscale organization of intact tissues. The method, called magnif...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.3641

    authors: Ku T,Swaney J,Park JY,Albanese A,Murray E,Cho JH,Park YG,Mangena V,Chen J,Chung K

    更新日期:2016-09-01 00:00:00

  • Full-length transcriptome assembly from RNA-Seq data without a reference genome.

    abstract::Massively parallel sequencing of cDNA has enabled deep and efficient probing of transcriptomes. Current approaches for transcript reconstruction from such data often rely on aligning reads to a reference genome, and are thus unsuitable for samples with a partial or missing reference genome. Here we present the Trinity...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.1883

    authors: Grabherr MG,Haas BJ,Yassour M,Levin JZ,Thompson DA,Amit I,Adiconis X,Fan L,Raychowdhury R,Zeng Q,Chen Z,Mauceli E,Hacohen N,Gnirke A,Rhind N,di Palma F,Birren BW,Nusbaum C,Lindblad-Toh K,Friedman N,Regev A

    更新日期:2011-05-15 00:00:00

  • At the heart of genetic testing.

    abstract::Genetic testing for rare heart conditions might someday expand to more common cardiac ailments. Already there are signs testing is dramatically changing how some conditions are treated and doctors' definition of who a patient is. Stephen Strauss reports. ...

    journal_title:Nature biotechnology

    pub_type: 新闻

    doi:10.1038/nbt1010-1003

    authors: Strauss S

    更新日期:2010-10-01 00:00:00

  • Toxin delivery by the coat protein of an aphid-vectored plant virus provides plant resistance to aphids.

    abstract::The sap-sucking insects (order Hemiptera), including aphids, planthoppers, whiteflies and stink bugs, present one of the greatest challenges for pest management in global agriculture. Insect neurotoxins offer an alternative to chemical insecticides for controlling these pests, but require delivery into the insect hemo...

    journal_title:Nature biotechnology

    pub_type: 杂志文章

    doi:10.1038/nbt.2753

    authors: Bonning BC,Pal N,Liu S,Wang Z,Sivakumar S,Dixon PM,King GF,Miller WA

    更新日期:2014-01-01 00:00:00