Balanced multi-image demons for non-rigid registration of magnetic resonance images.

Abstract:

:A new approach is introduced for non-rigid registration of a pair of magnetic resonance images (MRI). It is a generalization of the demons algorithm with low computational cost, based on local information augmentation (by integrating multiple images) and balanced implementation. Specifically, a single deformation that best registers more pairs of images is estimated. All these images are extracted by applying different operators to the two original ones, processing local neighbors of each pixel. The following five images were found to be appropriate for MRI registration: the raw image and those obtained by contrast-limited adaptive histogram equalization, local median, local entropy and phase symmetry. Thus, each local point in the images is supplemented by augmented information coming by processing its neighbor. Moreover, image pairs are processed in alternation for each iteration of the algorithm (in a balanced way), computing both a forward and a backward registration. The new method (called balanced multi-image demons) is tested on sagittal MRIs from 10 patients, both in simulated and experimental conditions, improving the performances over the classical demons approach with minimal increase of the computational cost (processing time around twice that of standard demons). Specifically, a simulated deformation was applied to the MRIs (either original or corrupted by additive Gaussian or speckle noises). In all tested cases, the new algorithm improved the estimation of the simulated deformation (squared estimation error decreased by about 65% in the average). Moreover, statistically significant improvements were obtained in experimental tests, in which different brain regions (i.e., brain, posterior fossa and cerebellum) were identified by the atlas approach and compared to those manually delineated (in the average, Dice coefficient increased of about 6%). The conclusion is that a balanced method applied to multiple information extracted from neighboring pixels is a low cost approach to improve registration of MRIs.

journal_name

Magn Reson Imaging

authors

Mesin L

doi

10.1016/j.mri.2020.09.013

subject

Has Abstract

pub_date

2020-12-01 00:00:00

pages

128-138

eissn

0730-725X

issn

1873-5894

pii

S0730-725X(20)30454-9

journal_volume

74

pub_type

杂志文章
  • Visualisation of changes in regional cerebral blood flow (rCBF) produced by ketamine using long TE gradient-echo sequences: preliminary results.

    abstract::Autoradiographic studies have shown that low dose ketamine produces increases in regional glucose utilisation and blood flow in the hippocampus, cerebral cortex, and olfactory lobe in the rat brain, probably due to antagonism at the NMDA receptor. Functional MRI using deoxyhaemoglobin contrast can be used to study cha...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(95)00010-e

    authors: Burdett NG,Menon DK,Carpenter TA,Jones JG,Hall LD

    更新日期:1995-01-01 00:00:00

  • In vivo measurement of diffusion and pseudo-diffusion in skeletal muscle at rest and after exercise.

    abstract::To investigate whether diffusion-related compartmentalization could be observed in skeletal muscle and whether this compartmentalization was affected by exercising, attenuation curves of signal against diffusion weighting were obtained in skeletal muscle of nine healthy volunteers at rest and after an exercise. Fiftee...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(94)00096-l

    authors: Morvan D

    更新日期:1995-01-01 00:00:00

  • Quantitative radial imaging of porous particles beds with varying water contents.

    abstract::Radial imaging protocols suitable for monitoring water transport in biopolymer and food materials during processes such as drying and rehydration are developed and tested on a well-characterized model sample. This model consisted of a randomly packed bed of Sephadex beads with varying water content. The results are in...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(94)91238-r

    authors: Hills BP,Babonneau F

    更新日期:1994-01-01 00:00:00

  • CPMG relaxation rate dispersion in dipole fields around capillaries.

    abstract::Transverse relaxation rates for Carr-Purcell-Meiboom-Gill (CPMG) sequences increase with inter-echo time in presence of microscopic magnetic field inhomogeneities due to nuclear spin diffusion. For a weak field approximation that includes diffusion effects, the CPMG relaxation rate shift for proton diffusion around ca...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2016.03.016

    authors: Kurz FT,Kampf T,Buschle LR,Heiland S,Schlemmer HP,Bendszus M,Ziener CH

    更新日期:2016-09-01 00:00:00

  • Correlation of MRI findings to histology of acetaminophen toxicity in the mouse.

    abstract::Acetaminophen (APAP) toxicity is responsible for approximately half of all cases of acute liver failure in the United States. The mouse model of APAP toxicity is widely used to examine mechanisms of APAP toxicity. Noninvasive approaches would allow for serial measurements in a single animal to study the effects of exp...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2011.09.023

    authors: Brown AT,Ou X,James LP,Jambhekar K,Pandey T,McCullough S,Chaudhuri S,Borrelli MJ

    更新日期:2012-02-01 00:00:00

  • Is 'virtual histology' the next step after the 'virtual autopsy'? Magnetic resonance microscopy in forensic medicine.

    abstract:AIM:The study aimed to validate magnetic resonance microscopy (MRM) studies of forensic tissue specimens (skin samples with electric injury patterns) against the results from routine histology. METHODS AND RESULTS:Computed tomography and magnetic resonance imaging are fast becoming important tools in clinical and fore...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2004.08.019

    authors: Thali MJ,Dirnhofer R,Becker R,Oliver W,Potter K

    更新日期:2004-10-01 00:00:00

  • Abdominal aortic aneurysm evaluation: comparison of US, CT, MRI, and angiography.

    abstract::We studied 26 cases of abdominal aortic aneurysm with magnetic resonance imaging (MRI), computed tomography (CT), ultrasonography (US), and angiography. Data acquired were compared to those obtained at surgery. Diameter of the aneurysm was correctly defined in all cases by CT and MRI, while angiography underestimated ...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(90)90089-k

    authors: Pavone P,Di Cesare E,Di Renzi P,Marsili L,Ventura M,Spartera C,Passariello R

    更新日期:1990-01-01 00:00:00

  • Assessment of extravascular extracellular space fraction in human melanoma xenografts by DCE-MRI and kinetic modeling.

    abstract::Tumor aggressiveness and response to therapy are influenced by the extravascular extracellular space fraction (EESF) of the malignant tissue. The EESF may, therefore, be an important prognostic parameter for cancer patients. The aim of this study was to investigate whether gadopentetate dimeglumine (Gd-DTPA)-based dyn...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2007.06.003

    authors: Benjaminsen IC,Brurberg KG,Ruud EB,Rofstad EK

    更新日期:2008-02-01 00:00:00

  • The effects of changing water content, relaxation times, and tissue contrast on tissue segmentation and measures of cortical anatomy in MR images.

    abstract::Water content is the dominant chemical compound in the brain and it is the primary determinant of tissue contrast in magnetic resonance (MR) images. Water content varies greatly between individuals, and it changes dramatically over time from birth through senescence of the human life span. We hypothesize that the effe...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2013.07.017

    authors: Bansal R,Hao X,Liu F,Xu D,Liu J,Peterson BS

    更新日期:2013-12-01 00:00:00

  • Interpretation of restricted diffusion in sandstones with internal field gradients.

    abstract::We report on experiments to characterize internal magnetic field gradients that are caused by magnetic susceptibility differences between the solid phase and the fluids filling the pore space. Our measurements focus on low-field relaxometry of brine and oil in sandstones from various reservoirs around the world. Our r...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(01)00287-9

    authors: Appel M,Freeman JJ,Gardner JS,Hirasaki GH,Zhang QG,Shafer JL

    更新日期:2001-04-01 00:00:00

  • Quantitative analysis of asymmetrical cortical activity in motor areas during sequential finger movement.

    abstract::Brain asymmetry is a phenomenon well known for handedness and has been studied in motor cortices. However, few quantitative studies on asymmetrical cortical activity in motor areas have been conducted. In this study, we systematically investigated asymmetrical cortical activity in motor areas during sequential finger ...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2007.03.024

    authors: Zeng L,Chen H,Ouyang L,Yao D,Gao JH

    更新日期:2007-12-01 00:00:00

  • Dual-acquisition phase-sensitive fat-water separation using balanced steady-state free precession.

    abstract::Balanced steady-state free precession (SSFP) sequences use fully re-focussed gradient waveforms to achieve a high signal and useful image contrast in short scan times. Despite these strengths, the clinical feasibility of balanced SSFP is still limited both by bright fat signal and by the signal voids that result from ...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2005.10.013

    authors: Hargreaves BA,Bangerter NK,Shimakawa A,Vasanawala SS,Brittain JH,Nishimura DG

    更新日期:2006-02-01 00:00:00

  • Fat ViP MRI: Virtual Phantom Magnetic Resonance Imaging of water-fat systems.

    abstract:OBJECT:Virtual Phantom Magnetic Resonance Imaging (ViP MRI) is a method to generate reference signals on MR images, using external radiofrequency (RF) signals. The aim of this study was to assess the feasibility of ViP MRI to generate complex-data images of phantoms mimicking water-fat systems. MATERIALS AND METHODS:V...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2015.12.002

    authors: Salvati R,Hitti E,Bellanger JJ,Saint-Jalmes H,Gambarota G

    更新日期:2016-06-01 00:00:00

  • An MRI perfusion model incorporating nonequilibrium exchange between vascular and extravascular compartments.

    abstract::A model of MRI signal intensity which is a function of perfusion is developed based upon the assumption that biological tissue can be represented by a blood and tissue compartment. The longitudinal magnetization is derived from the Bloch equations which are modified to model the magnetization in both the blood and tis...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(91)90095-4

    authors: Gullberg GT,Ma X,Parker DL,Roy DN

    更新日期:1991-01-01 00:00:00

  • Pulseq-Graphical Programming Interface: Open source visual environment for prototyping pulse sequences and integrated magnetic resonance imaging algorithm development.

    abstract:PURPOSE:To provide a single open-source platform for comprehensive MR algorithm development inclusive of simulations, pulse sequence design and deployment, reconstruction, and image analysis. METHODS:We integrated the "Pulseq" platform for vendor-independent pulse programming with Graphical Programming Interface (GPI)...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2018.03.008

    authors: Ravi KS,Potdar S,Poojar P,Reddy AK,Kroboth S,Nielsen JF,Zaitsev M,Venkatesan R,Geethanath S

    更新日期:2018-10-01 00:00:00

  • Aligning 3D time-of-flight MRA datasets for quantitative longitudinal studies: evaluation of rigid registration techniques.

    abstract:OBJECTIVE:3D Time-of-flight (TOF) magnetic resonance angiography is commonly used for vascular analyses. A quantification of longitudinal morphological changes usually requires the registration of TOF image sequences acquired at different time points. The aim of this study was to evaluate the precision of different 3D ...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2014.08.011

    authors: Verleger T,Schönfeld M,Säring D,Siemonsen S,Fiehler J,Forkert ND

    更新日期:2014-12-01 00:00:00

  • Fractional amplitude of low-frequency fluctuation changes in monkeys with spinal cord injury: a resting-state fMRI study.

    abstract:PURPOSE:Although functional magnetic resonance imaging (fMRI) has revealed that spinal cord injury (SCI) causes anomalous changes in task-induced brain activation, its effect during the resting state remains unclear. The aim of this study is to explore the changes of the brain resting-state function in non-human primat...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2014.02.001

    authors: Rao JS,Ma M,Zhao C,Zhang AF,Yang ZY,Liu Z,Li XG

    更新日期:2014-06-01 00:00:00

  • Correlations and dissociations between BOLD signal and P300 amplitude in an auditory oddball task: a parametric approach to combining fMRI and ERP.

    abstract::A parametric method is proposed to examine the relationship between neuronal activity, measured with event related potentials (ERPs), and the hemodynamic response, observed with functional magnetic resonance imaging (fMRI), during an auditory oddball paradigm. After verifying that the amplitude of the evoked response ...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(02)00496-4

    authors: Horovitz SG,Skudlarski P,Gore JC

    更新日期:2002-05-01 00:00:00

  • Quality assessment of localization technique performance in small volume in vivo 1H MR spectroscopy.

    abstract::A new phantom and evaluation method for experimental evaluation of 1H-magnetic resonance spectroscopy single volume localization techniques regarding signal contamination (C), defined as the part of the signal originating outside the volume of interest, is presented. The quality assessment method is based on a spheric...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(99)00076-4

    authors: Burtscher IM,Johansson E,Holtås S,Ståhlberg F

    更新日期:1999-12-01 00:00:00

  • Factors influencing contrast in fast spin-echo MR imaging.

    abstract::Multi-echo pulse sequences for producing T2-weighted images in much reduced imaging times have recently been developed for routine clinical use. A number of recent articles have described the contrast obtained with fast spin-echo (FSE) sequences and have generally indicated that they depict tissues very similarly to c...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章,评审

    doi:10.1016/0730-725x(92)90001-g

    authors: Constable RT,Anderson AW,Zhong J,Gore JC

    更新日期:1992-01-01 00:00:00

  • Reducing motion artifacts in two-dimensional Fourier transform imaging.

    abstract::The effects of motion in two-dimensional Fourier transform imaging (2DFT) are considered. Specific calculations describing the case of periodic motion are presented. The results predict the commonly seen artifact of image replication, sometimes referred to as ghosting. Expressions for both position and amplitude of th...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(86)91046-5

    authors: Haacke EM,Patrick JL

    更新日期:1986-01-01 00:00:00

  • Signal and contrast effects due to T2 decay during k-space readout of UTE (ultrashort TE) sequences.

    abstract::In ultrashort TE (UTE) imaging, the short T2 values of the tissues of interest are comparable to the k-space readout duration, which result in significant T2 decay during k-space readout. This decay consequently causes significant effects on signal and contrast in UTE sequences, which we evaluate in this paper using m...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2013.11.002

    authors: Chiang JT,Carl M,Du J

    更新日期:2014-04-01 00:00:00

  • Diagnosis of discoid lateral meniscus of the knee on MR imaging.

    abstract::To establish the quantitative MR diagnostic criteria for discoid lateral meniscus, MR imaging of 60 knees with arthroscopically confirmed discoid lateral menisci and 134 knees with semilunar lateral menisci were analyzed. Following four quantitative parameters were measured. (1) Meniscal width (MW): The minimum menisc...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(02)00473-3

    authors: Samoto N,Kozuma M,Tokuhisa T,Kobayashi K

    更新日期:2002-01-01 00:00:00

  • Non-invasive temperature mapping using MRI: comparison of two methods based on chemical shift and T1-relaxation.

    abstract:PURPOSE:To implement and evaluate the accuracy of non-invasive temperature mapping using MRI methods based on the chemical shift (CS) and T1 relaxation in media of various heterogeneity during focal (laser) and external thermal energy deposition. MATERIALS AND METHODS:All measurements were performed on a 1.5 T superco...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(97)00311-1

    authors: Bertsch F,Mattner J,Stehling MK,Müller-Lisse U,Peller M,Loeffler R,Weber J,Messmer K,Wilmanns W,Issels R,Reiser M

    更新日期:1998-05-01 00:00:00

  • Quantitative MRI using T1ρ and T2 in human osteoarthritic cartilage specimens: correlation with biochemical measurements and histology.

    abstract:PURPOSE:A direct correlation between T(1ρ), T(2) and quantified proteoglycan and collagen contents in human osteoarthritic cartilage has yet to be documented. We aimed to investigate the orientation effect on T(1ρ) and T(2) values in human osteoarthritic cartilage and to quantify the correlation between T(1ρ), T(2) vs....

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2010.09.004

    authors: Li X,Cheng J,Lin K,Saadat E,Bolbos RI,Jobke B,Ries MD,Horvai A,Link TM,Majumdar S

    更新日期:2011-04-01 00:00:00

  • A flexible 9-channel coil array for fast 3D MR thermometry in MR-guided high-intensity focused ultrasound (HIFU) studies on rabbits at 3 T.

    abstract::Signal-to-noise ratio (SNR) is a critical factor in MR-guided high-intensity focused ultrasound (HIFU) for local heating, which can affect the accuracy of temperature measurement. In order to achieve high SNR and higher temporal resolution, dedicated coil arrays for MR-guided HIFU applications need to be developed. In...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2019.10.008

    authors: Chen Q,Li Y,Jiang R,Zou C,Tie C,Wen J,Yang X,Zhang X,Liu X,Zheng H

    更新日期:2020-01-01 00:00:00

  • A rapid method for the measurement and estimation of CO2 diffusivity in liquid hydrocarbon-saturated porous media using MRI.

    abstract::In this study, magnetic resonance imaging (MRI) was used to dynamically visualize the diffusion process of CO2 in porous media saturated with liquid hydrocarbon. Based on the assumption of semi-infinite media, effective CO2 diffusivity was obtained directly by the nonlinear fitting of one MR profile during the diffusi...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2015.12.024

    authors: Zhao Y,Chen J,Yang M,Liu Y,Song Y

    更新日期:2016-05-01 00:00:00

  • Sampling time effects on signal-to-noise and contrast-to-noise ratios in spin-echo MRI.

    abstract::This work discusses the effect of sampling time on noise, signal-to-noise and contrast-to-noise ratios in magnetic resonance imaging. A simple imaging experiment is performed to demonstrate the effect of sampling time on noise, confirming theoretical expectations that doubling the sampling time while decreasing the re...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(87)90481-4

    authors: Hendrick RE

    更新日期:1987-01-01 00:00:00

  • A non-invasive technique for 3-dimensional assessment of articular cartilage thickness based on MRI. Part 1: Development of a computational method.

    abstract::Articular cartilage thickness is of relevance in various fields in diagnostics and biomedical research. In view of recent improvements of MR cartilage imaging a computational method has been developed for three-dimensional determination of cartilage thickness from tomographic datasets. A correction algorithm that comp...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(97)00012-x

    authors: Lösch A,Eckstein F,Haubner M,Englmeier KH

    更新日期:1997-01-01 00:00:00

  • Nuclear magnetic resonance imaging techniques as developed modestly within a university medical center environment: what can the small system contribute at this point?

    abstract::This paper describes a geometrically small NMR imaging system which has been developed and assembled within a university medical center environment. Consideration is given to the technical specifications and basic economics for the magnet system, NMR spectrometer, and computer configuration. Initial research objective...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(82)90268-5

    authors: Thomas SR,Ackerman JL,Goebel JR,Davis M,Kereiakes JG,Lin YY

    更新日期:1982-01-01 00:00:00