Comprehensive Identification of Potential Crucial Genes and miRNA-mRNA Regulatory Networks in Papillary Thyroid Cancer.

Abstract:

Background:Thyroid cancer is the most common endocrine malignancy, with a recent global increase of 20% in age-related incidence. Ultrasonography and ultrasonography-guided fine-needle aspiration biopsy (FNAB) are the most widely used diagnostic tests for thyroid nodules; however, it is estimated that up to 25% of thyroid biopsies are cytologically inconclusive. Molecular markers can help guide patient-oriented and targeted treatment of thyroid nodules and thyroid cancer. Methods:Datasets related to papillary thyroid cancer (PTC) or thyroid carcinoma (GSE129562, GSE3678, GSE54958, GSE138042, and GSE124653) were downloaded from the GEO database and analysed using the Limma package of R software. For functional enrichment analysis, the Kyoto Encyclopedia of Genes and Genomes pathway analysis and Gene Ontology were applied to differentially expressed genes (DEGs) using the Metascape website. A protein-protein interaction (PPI) network was built from the STRING database. Gene expression, protein expression, immunohistochemistry, and potential functional gene survival were analysed using the GEPIA website, the Human Protein Atlas website, and the UALCAN website. Potential target miRNAs were predicted using the miRDB and Starbase datasets. Results:We found 219 upregulated and 310 downregulated DEGs, with a cut-off of p < 0.01 and ∣log FC | >1.5. The DEGs in papillary thyroid cancer were mainly enriched in extracellular structural organisation. At the intersection of the PPI network and Metascape MCODEs, the hub genes in common were identified as FN1, APOE, CLU, and SDC2. In the targeted regulation network of miRNA-mRNA, the hsa-miR-424-5p was found to synchronously modulate two hub genes. Survival analysis showed that patients with high expression of CLU and APOE had better prognosis. Conclusions:CLU and APOE are involved in the molecular mechanism of papillary thyroid cancer. The hsa-miR-424-5p might have the potential to reverse the processes of papillary thyroid cancer by modulating the hub genes. These are potential targets for the treatment of patients with papillary thyroid cancer.

journal_name

Biomed Res Int

authors

Nan BY,Xiong GF,Zhao ZR,Gu X,Huang XS

doi

10.1155/2021/6752141

subject

Has Abstract

pub_date

2021-01-12 00:00:00

pages

6752141

eissn

2314-6133

issn

2314-6141

journal_volume

2021

pub_type

杂志文章
  • A Network Pharmacology Analysis to Explore the Effect of Astragali Radix-Radix Angelica Sinensis on Traumatic Brain Injury.

    abstract::Traumatic brain injury (TBI) is a critical public health and socioeconomic problem worldwide. The herb pair Astragali Radix (AR)-Radix Angelica Sinensis (RAS) is a common prescribed herbal formula or is added to other Chinese medicine prescriptions for traumatic brain injury (TBI) treatment. However, the underlying me...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2018/3951783

    authors: Xie G,Peng W,Li P,Xia Z,Zhong Y,He F,Tulake Y,Feng D,Wang Y,Xing Z

    更新日期:2018-11-25 00:00:00

  • Application of Compressive Sensing to Ultrasound Images: A Review.

    abstract::Compressive sensing (CS) offers compression of data below the Nyquist rate, making it an attractive solution in the field of medical imaging, and has been extensively used for ultrasound (US) compression and sparse recovery. In practice, CS offers a reduction in data sensing, transmission, and storage. Compressive sen...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2019/7861651

    authors: Yousufi M,Amir M,Javed U,Tayyib M,Abdullah S,Ullah H,Qureshi IM,Alimgeer KS,Akram MW,Khan KB

    更新日期:2019-11-15 00:00:00

  • Analyzing Active Constituents and Optimal Steaming Conditions Related to the Hematopoietic Effect of Steamed Panax notoginseng by Network Pharmacology Coupled with Response Surface Methodology.

    abstract::During hundreds of years of medication, it is believed that the steamed Panax notoginseng (SPN) can enrich and regulate the blood, replenish the body, and improve the health. The aim of this study was to optimize the steaming conditions of SPN which are related to the hematopoietic effect. In the study, network pharma...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2020/9371426

    authors: Zhou S,Jiang N,Zhang M,Xiao X,Liu Z,Xu X,Gao Q,Lv W

    更新日期:2020-07-26 00:00:00

  • Different Plaque Composition and Progression in Patients with Stable and Unstable Coronary Syndromes Evaluated by Cardiac CT.

    abstract:OBJECTIVE:To compare the quantity, subtype, and progression of atherosclerosis by cardiac computed tomography (CT) and intravascular ultrasound (IVUS) in patients with stable (SAP) and unstable angina pectoris or non-ST-elevation myocardial infarction (UAP/n-STEMI). METHODS:Forty patients with SAP and 20 with UAP/n-ST...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/401357

    authors: Dalager MG,Bøttcher M,Thygesen J,Andersen G,Bøtker HE

    更新日期:2015-01-01 00:00:00

  • Effect of Bitter Compounds on the Expression of Bitter Taste Receptor T2R7 Downstream Signaling Effectors in cT2R7/pDisplay-Gα16/gust44/pcDNA3.1 (+) Cells.

    abstract::Bitterness is an important taste sensation for chickens, which provides useful sensory information for acquisition and selection of diet, and warns them against ingestion of potentially harmful and noxious substances in nature. Bitter taste receptors (T2Rs) mediate the recognition of bitter compounds belonging to a fa...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2019/6301915

    authors: Su Y,Jie H,Zhu Q,Zhao X,Wang Y,Yin H,Kumar Mishra S,Li D

    更新日期:2019-10-31 00:00:00

  • Folated synperonic-cholesteryl hemisuccinate polymeric micelles for the targeted delivery of docetaxel in melanoma.

    abstract::The objective of this study was the synthesis of folic acid- (FA-) targeted polymeric micelles of Synperonic PE/F 127-cholesteryl hemisuccinate (PF127-Chol) for specific delivery of docetaxel (DTX). Targeted or nontargeted micelles loaded with DTX were prepared via dialysis method. The effects of processing variables ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/746093

    authors: Varshosaz J,Taymouri S,Hassanzadeh F,Javanmard SH,Rostami M

    更新日期:2015-01-01 00:00:00

  • Laser Scanning In Vivo Confocal Microscopy of Clear Grafts after Penetrating Keratoplasty.

    abstract:PURPOSE:To evaluate the changes of keratocytes and dendritic cells in the central clear graft by laser scanning in vivo confocal microscopy after penetrating keratoplasty (PK). METHODS:Thirty adult subjects receiving PK at Shandong Eye Institute and with clear grafts and no sign of immune rejection after surgery were ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2016/5159746

    authors: Wang D,Song P,Wang S,Sun D,Wang Y,Zhang Y,Gao H

    更新日期:2016-01-01 00:00:00

  • Association Use of Bisphosphonates with Risk of Breast Cancer: A Meta-Analysis.

    abstract:Background:Previous studies have investigated the association between the use of bisphosphonates and the development of breast cancer, which presented controversial results. Thus, this meta-analysis was conducted to summarize the current evidence of the association of bisphosphonate use with breast cancer risk. Method...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2020/5606573

    authors: Peng R,Liang X,Zhang G,Yao Y,Chen Z,Pan X,Wang J,Liu G

    更新日期:2020-10-06 00:00:00

  • Combinational Effect of Rumex tingitanus (Polygonaceae) Hexane Extract and Bacillus thuringiensis  δ-Endotoxin against Spodoptera littoralis (Lepidoptera: Noctuidae).

    abstract::The increasing insect resistance against Bacillus thuringiensis delta-endotoxins is a serious problem which makes it urgent to look for new eco-friendly strategies. Combining these toxins with other biomolecules is one of the promising strategies against insect pests. In this work, we evaluated the bioinsecticidal pot...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2018/3895834

    authors: Mhalla D,Ben Farhat-Touzri D,Tounsi S,Trigui M

    更新日期:2018-08-08 00:00:00

  • Mortality and Cardiovascular Complications in Older Complex Chronic Patients with Type 2 Diabetes.

    abstract:AIMS/INTRODUCTION:Determining the prevalence of diabetes and its cardiovascular complications and all-cause mortality in older chronic complex patients. MATERIALS AND METHODS:We carried out a multicenter retrospective study and included a randomized sample of 932 CCP people. We assessed the prevalence of diabetes acco...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2017/6078498

    authors: Clua-Espuny JL,González-Henares MA,Queralt-Tomas MLL,Campo-Tamayo W,Muria-Subirats E,Panisello-Tafalla A,Lucas-Noll J

    更新日期:2017-01-01 00:00:00

  • Potential Role of the Last Half Repeat in TAL Effectors Revealed by a Molecular Simulation Study.

    abstract::TAL effectors (TALEs) contain a modular DNA-binding domain that is composed of tandem repeats. In all naturally occurring TALEs, the end of tandem repeats is invariantly a truncated half repeat. To investigate the potential role of the last half repeat in TALEs, we performed comparative molecular dynamics simulations ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2016/8036450

    authors: Wan H,Chang S,Hu JP,Tian XH,Wang MH

    更新日期:2016-01-01 00:00:00

  • Bioactivity and Physicochemical Properties of Three Calcium Silicate-Based Cements: An In Vitro Study.

    abstract:Objective:This study evaluated the bioactivity and physicochemical properties of three commercial calcium silicate-based endodontic materials (MTA, EndoSequence Root Repair Material putty, and Biodentine™). Material and Methods. Horizontal sections of 3 mm thickness from 18 root canals of human teeth were subjected to ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2020/9576930

    authors: Talabani RM,Garib BT,Masaeli R

    更新日期:2020-05-22 00:00:00

  • 1,25-Dihydroxyvitamin D₃ Promotes High Glucose-Induced M1 Macrophage Switching to M2 via the VDR-PPARγ Signaling Pathway.

    abstract::Macrophages, especially their activation state, are closely related to the progression of diabetic nephropathy. Classically activated macrophages (M1) are proinflammatory effectors, while alternatively activated macrophages (M2) exhibit anti-inflammatory properties. 1,25-Dihydroxyvitamin D3 has renoprotective roles th...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/157834

    authors: Zhang X,Zhou M,Guo Y,Song Z,Liu B

    更新日期:2015-01-01 00:00:00

  • The mouse median nerve experimental model in regenerative research.

    abstract::Sciatic nerve crush injury in rat animal model is one of the most common experimental models used in regenerative research. However, the availability of transgenic mouse for nerve regeneration studies is constantly increasing and, therefore, the shift from rat model to mouse model is, in some cases, necessary. Moreove...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2014/701682

    authors: Jager SB,Ronchi G,Vaegter CB,Geuna S

    更新日期:2014-01-01 00:00:00

  • Changes in the mucus barrier during cisplatin-induced intestinal mucositis in rats.

    abstract:AIM:Gastrointestinal mucositis is a frequent complication of antineoplastic chemotherapy, but the effects of chemotherapy on mucosal defense mechanisms remain poorly understood. We studied the effects of cisplatin on mucin, one of the principal defense factors of the gastrointestinal mucosa, and evaluated the efficacy ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2013/276186

    authors: Yamamoto H,Ishihara K,Takeda Y,Koizumi W,Ichikawa T

    更新日期:2013-01-01 00:00:00

  • Adventitial alterations are the main features in pulmonary artery remodeling due to long-term chronic intermittent hypobaric hypoxia in rats.

    abstract::Long-term chronic intermittent exposure to altitude hypoxia is a labor phenomenon requiring further research. Using a rat model, we examined whether this type of exposure differed from chronic exposure in terms of pulmonary artery remodeling and other features. Rats were subjected to chronic hypoxia (CH, n = 9) and lo...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/169841

    authors: Brito J,Siques P,Arribas SM,López de Pablo AL,González MC,Naveas N,Arriaza K,Flores K,León-Velarde F,Pulido R,Ordenes S,López MR

    更新日期:2015-01-01 00:00:00

  • Heat shock proteins at the crossroads between cancer and Alzheimer's disease.

    abstract::Heat shock proteins 70 and heat shock proteins 90 (Hsp70/90) have been implicated in many crucial steps of carcinogenesis: stabilizing oncogenic proteins, inhibiting programmed cell death and replicative senescence, induction of tumor angiogenesis, and activation of the invasion and metastasis. Plenty of cancer relate...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2014/239164

    authors: Wang H,Tan MS,Lu RC,Yu JT,Tan L

    更新日期:2014-01-01 00:00:00

  • Ordinary and Activated Bone Grafts: Applied Classification and the Main Features.

    abstract::Bone grafts are medical devices that are in high demand in clinical practice for substitution of bone defects and recovery of atrophic bone regions. Based on the analysis of the modern groups of bone grafts, the particularities of their composition, the mechanisms of their biological effects, and their therapeutic ind...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2015/365050

    authors: Deev RV,Drobyshev AY,Bozo IY,Isaev AA

    更新日期:2015-01-01 00:00:00

  • Identification of Biomarkers to Construct a Competing Endogenous RNA Network and Establishment of a Genomic-Clinicopathologic Nomogram to Predict Survival for Children with Rhabdoid Tumors of the Kidney.

    abstract::Rhabdoid tumor of the kidney (RTK) is a rare and severely malignant tumor occurring in infancy and early childhood, with the overall outcomes remain poor. Neither gene regulatory networks nor biomarkers to predict the prognostic outcomes have been elucidated in RTK. In this study, RNA sequencing data were obtained to ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2020/5843874

    authors: Wang X,Wu X,Li T,Cui M,Zhu L,Wang G,Guo F

    更新日期:2020-08-26 00:00:00

  • An Innovative Excited-ACS-IDGWO Algorithm for Optimal Biomedical Data Feature Selection.

    abstract::Finding an optimal set of discriminative features is still a crucial but challenging task in biomedical science. The complexity of the task is intensified when any of the two scenarios arise: a highly dimensioned dataset and a small sample-sized dataset. The first scenario poses a big challenge to existing machine lea...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2020/8506365

    authors: Segera D,Mbuthia M,Nyete A

    更新日期:2020-08-17 00:00:00

  • Combined Administration of Bisphosphonates, Chemotherapeutic Agents, and/or Targeted Drugs Increases the Risk for Stage 3 Medication-Related Osteonecrosis of the Jaw: A 4-Year Retrospective Study.

    abstract:Objectives:Patients with stage 3 medication-related osteonecrosis of the jaw (MRONJ) suffer from severe complications. Chemotherapeutic agents and targeted drugs are considered to be associated with the development of MRONJ. However, little is known regarding the association of those agents with stage 3 MRONJ. The purp...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2020/5847429

    authors: Zhou Y,Yu Y,Shi Y,Li M,Yang C,Wang S

    更新日期:2020-10-15 00:00:00

  • The impact of low muscle mass definition on the prevalence of sarcopenia in older Australians.

    abstract:BACKGROUND:Sarcopenia is the presence of low muscle mass and low muscle function. The aim of this study was to establish cutoffs for low muscle mass using three published methods and to compare the prevalence of sarcopenia in older Australians. METHODS:Gender specific cutoffs levels were identified for low muscle mass...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2014/361790

    authors: Yu S,Appleton S,Adams R,Chapman I,Wittert G,Visvanathan T,Visvanathan R

    更新日期:2014-01-01 00:00:00

  • Inguinal Hernias Represent the Most Frequent Surgical Complication after Kasai in Biliary Atresia Infants.

    abstract::Biliary atresia (BA) is an orphan medical condition of the newborn, resulting in end-stage liver cirrhosis due to obliterative cholangiopathy of the extrahepatic bile duct. Although Kasai's hepatoportoenterostomy (KPE) is the well-established first-line therapy, little is known about its surgical complications. 153 pa...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/383791

    authors: Madadi-Sanjani O,Carl N,Longerich T,Petersen C,Andruszkow JH

    更新日期:2015-01-01 00:00:00

  • Optimal Experiment Design for Monoexponential Model Fitting: Application to Apparent Diffusion Coefficient Imaging.

    abstract::The monoexponential model is widely used in quantitative biomedical imaging. Notable applications include apparent diffusion coefficient (ADC) imaging and pharmacokinetics. The application of ADC imaging to the detection of malignant tissue has in turn prompted several studies concerning optimal experiment design for ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/138060

    authors: Alipoor M,Maier SE,Gu IY,Mehnert A,Kahl F

    更新日期:2015-01-01 00:00:00

  • Hepatitis B Virus X Protein-Induced Serine Protease Inhibitor Kazal Type 1 Is Associated with the Progression of HBV-Related Diseases.

    abstract:Objective:Hepatitis B virus (HBV) causes inflammation of the liver and is the leading cause of both liver cirrhosis (LC) and hepatocellular carcinoma (HCC). Serine protease inhibitor Kazal type 1 (SPINK1) is an acute-phase response protein that is overexpressed in liver cancer tissue. This study investigated the clinic...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2019/9321494

    authors: Zhu C,Han H,Li J,Xu L,Liu F,Wu K,Liu X

    更新日期:2019-05-22 00:00:00

  • The type III secretion system (T3SS) of Chlamydophila psittaci is involved in the host inflammatory response by activating the JNK/ERK signaling pathway.

    abstract::Chlamydophila psittaci (C. psittaci) is a human zoonotic pathogen, which could result in severe respiratory disease. In the present study, we investigated the role and mechanism of the type III secretion system (T3SS) of C. psittaci in regulating the inflammatory response in host cells. C. psittaci-infected THP-1 cell...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/652416

    authors: He QZ,Zeng HC,Huang Y,Hu YQ,Wu YM

    更新日期:2015-01-01 00:00:00

  • Total bolus extraction method improves arterial image quality in dynamic CTAs derived from whole-brain CTP data.

    abstract::Background and Purposes. The 320-detector row CT scanner enables visualization of whole-brain hemodynamic information (dynamic CT angiography (CTA) derived from CT perfusion scans). However, arterial image quality in dynamic CTA (dCTA) is inferior to arterial image quality in standard CTA. This study evaluates whether...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2014/603173

    authors: Ghariq E,Mendrik AM,Willems PW,Joemai RM,Ghariq E,Vonken EJ,van Osch MJ,van Walderveen MA

    更新日期:2014-01-01 00:00:00

  • Association between Adiponectin Gene Polymorphism and Environmental Risk Factors of Type 2 Diabetes Mellitus among the Chinese Population in Hohhot.

    abstract:Objective:The aim of this study was to investigate the association between adiponectin gene polymorphisms rs10937273, rs1501299, rs182052, rs2241767, and rs266729 and environmental risk factors of type 2 diabetes mellitus (T2DM) in Hohhot. The study explored different models of gene-environment interactions, aimed at p...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2020/6383906

    authors: Cui M,Gao Y,Zhao Y,Pang H,Chen L,Wang Z,Zhao L,Li M

    更新日期:2020-06-21 00:00:00

  • Histological, histochemical, and protein changes after induced malocclusion by occlusion alteration of Wistar rats.

    abstract::Although disorders of the stomatognathic system are common, the mechanisms involved are unknown. Our objective was to study the changes in the masseter muscles after unilateral exodontia. Molar extraction was performed on Wistar rats (left side), and the animals were sacrificed after either 14 or 26 days. The masseter...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2014/563463

    authors: Guerra Cde S,Carla Lara Pereira Y,Issa JP,Luiz KG,Guimarães EA,Gerlach RF,Iyomasa MM

    更新日期:2014-01-01 00:00:00

  • Steroid Tumor Environment in Male and Female Mice Model of Canine and Human Inflammatory Breast Cancer.

    abstract::Canine inflammatory mammary cancer (IMC) shares clinical and histopathological characteristics with human inflammatory breast cancer (IBC) and has been proposed as a good model for studying the human disease. The aim of this study was to evaluate the capacity of female and male mice to reproduce IMC and IBC tumors and...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2016/8909878

    authors: Caceres S,Peña L,Silvan G,Illera MJ,Woodward WA,Reuben JM,Illera JC

    更新日期:2016-01-01 00:00:00