Metabolic pathway compartmentalization: an underappreciated opportunity?

Abstract:

:For eukaryotic cells to function properly, they divide their intracellular space in subcellular compartments, each harboring specific metabolic activities. In recent years, it has become increasingly clear that compartmentalization of metabolic pathways is a prerequisite for certain cellular functions. This has for instance been documented for cellular migration, which relies on subcellular localization of glycolysis or mitochondrial respiration in a cell type-dependent manner. Although exciting, this field is still in its infancy, partly due to the limited availability of methods to study the directionality of metabolic pathways and to visualize metabolic processes in distinct cellular compartments. Nonetheless, advances in this field may offer opportunities for innovative strategies to target deregulated compartmentalized metabolism in disease.

journal_name

Curr Opin Biotechnol

authors

Zecchin A,Stapor PC,Goveia J,Carmeliet P

doi

10.1016/j.copbio.2014.11.022

subject

Has Abstract

pub_date

2015-08-01 00:00:00

pages

73-81

eissn

0958-1669

issn

1879-0429

pii

S0958-1669(14)00210-9

journal_volume

34

pub_type

杂志文章,评审
  • Microbial biocatalyst developments to upgrade fossil fuels.

    abstract::Steady increases in the average sulfur content of petroleum and stricter environmental regulations concerning the sulfur content have promoted studies of bioprocessing to upgrade fossil fuels. Bioprocesses can potentially provide a solution to the need for improved and expanded fuel upgrading worldwide, because biopro...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2006.04.005

    authors: Kilbane JJ 2nd

    更新日期:2006-06-01 00:00:00

  • The microbial diversity of inland waters.

    abstract::The conservation and sustainable use of freshwater resources is of global importance. Microorganisms are not only the most abundant organisms in natural freshwater systems, but are also key players in ecological processes controlling water quality. Detailed knowledge of the diversity and function of microorganisms dwe...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2006.05.006

    authors: Hahn MW

    更新日期:2006-06-01 00:00:00

  • In situ vadose zone bioremediation.

    abstract::Contamination of the vadose zone with various pollutants is a world-wide problem, and often technical or economic constraints impose remediation without excavation. In situ bioremediation in the vadose zone by bioventing has become a standard remediation technology for light spilled petroleum products. In this review,...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2013.08.018

    authors: Höhener P,Ponsin V

    更新日期:2014-06-01 00:00:00

  • Dynamic resolution and stereoinversion of secondary alcohols by chemo-enzymatic processes.

    abstract::To overcome the maximum 50% yield limitation of classical resolution methods, deracemization processes involving a racemization step (dynamic resolution) or a prochiral intermediate (stereoinversion) have been developed. The use of transition metal complexes as racemizing agents, in combination with an enzymatic react...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(00)00144-0

    authors: Azerad R,Buisson D

    更新日期:2000-12-01 00:00:00

  • Edible genetically modified microorganisms and plants for improved health.

    abstract::The development of new strategies for the delivery of vaccine antigens or immune modulators to the mucosal tissue includes innovative approaches such as the use of genetically modified food microorganisms and plants. Even though the 'proof-of-concept' has recently been established for these two systems, key questions ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(00)00255-x

    authors: Mercenier A,Wiedermann U,Breiteneder H

    更新日期:2001-10-01 00:00:00

  • Systems biology approach to bioremediation.

    abstract::Bioremediation has historically been approached as a 'black box' in terms of our fundamental understanding. Thus it succeeds and fails, seldom without a complete understanding of why. Systems biology is an integrated research approach to study complex biological systems, by investigating interactions and networks at t...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2012.01.015

    authors: Chakraborty R,Wu CH,Hazen TC

    更新日期:2012-06-01 00:00:00

  • Strategies for the aerobic co-metabolism of chlorinated solvents.

    abstract::Recent field and laboratory studies have evaluated the potential for aerobic co-metabolism of chlorinated solvents. Different co-metabolic substrates and different methods of application have been tried, including growing indigenous microbes in situ, and injecting into the soil subsurface strains grown in subsurface r...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(97)80007-9

    authors: Semprini L

    更新日期:1997-06-01 00:00:00

  • Reconstruction of microbial transcriptional regulatory networks.

    abstract::Although metabolic networks can be readily reconstructed through comparative genomics, the reconstruction of regulatory networks has been hindered by the relatively low level of evolutionary conservation of their molecular components. Recent developments in experimental techniques have allowed the generation of vast a...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2003.11.002

    authors: Herrgård MJ,Covert MW,Palsson BØ

    更新日期:2004-02-01 00:00:00

  • Impact of microbial transformation of food on health - from fermented foods to fermentation in the gastro-intestinal tract.

    abstract::Fermentation of food components by microbes occurs both during certain food production processes and in the gastro-intestinal tract. In these processes specific compounds are produced that originate from either biotransformation reactions or biosynthesis, and that can affect the health of the consumer. In this review,...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2010.12.004

    authors: van Hylckama Vlieg JE,Veiga P,Zhang C,Derrien M,Zhao L

    更新日期:2011-04-01 00:00:00

  • Ethanol production by engineered thermophiles.

    abstract::We compare a number of different strategies that have been pursued to engineer thermophilic microorganisms for increased ethanol production. Ethanol production from pyruvate can proceed via one of four pathways, which are named by the key pyruvate dissimilating enzyme: pyruvate decarboxylase (PDC), pyruvate dehydrogen...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2015.02.006

    authors: Olson DG,Sparling R,Lynd LR

    更新日期:2015-06-01 00:00:00

  • Advances in synthetic biology: on the path from prototypes to applications.

    abstract::Synthetic biology combines knowledge from various disciplines including molecular biology, engineering, mathematics and physics to design and build novel proteins, genetic circuits and metabolic networks. Early efforts aimed at altering the behavior of individual elements have now evolved to focus on the construction ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2005.07.002

    authors: McDaniel R,Weiss R

    更新日期:2005-08-01 00:00:00

  • Aquatic phototrophs: efficient alternatives to land-based crops for biofuels.

    abstract::To mitigate some of the potentially deleterious environmental and agricultural consequences associated with current land-based-biofuel feedstocks, we propose the use of biofuels derived from aquatic microbial oxygenic photoautotrophs (AMOPs), more commonly known as cyanobacteria, algae, and diatoms. Herein we review t...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2008.05.007

    authors: Dismukes GC,Carrieri D,Bennette N,Ananyev GM,Posewitz MC

    更新日期:2008-06-01 00:00:00

  • Plantibodies: applications, advantages and bottlenecks.

    abstract::Various strategies have been developed to exploit plants as bioreactors for the production of pharmaceutical antibodies, to engineer antibody-mediated pathogen resistance or to alter the plant phenotype by immunomodulation. Recent research developments focus on the fine-tuning of expression systems and the detailed ch...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(02)00303-8

    authors: Stoger E,Sack M,Fischer R,Christou P

    更新日期:2002-04-01 00:00:00

  • Environmental monitoring using autonomous vehicles: a survey of recent searching techniques.

    abstract::Autonomous vehicles are becoming an essential tool in a wide range of environmental applications that include ambient data acquisition, remote sensing, and mapping of the spatial extent of pollutant spills. Among these applications, pollution source localization has drawn increasing interest due to its scientific and ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.01.009

    authors: Bayat B,Crasta N,Crespi A,Pascoal AM,Ijspeert A

    更新日期:2017-06-01 00:00:00

  • Application of state-of-art sequencing technologies to indigenous food fermentations.

    abstract::Fermented foods and beverages are an integral part of the human diet globally. Understanding the microbial interactions within these fermenting ecosystems is required to deliver safe products with desirable consumer properties, and moreover, maintenance of these traditions. Effective tools are required for documentati...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2012.08.004

    authors: van Hijum SA,Vaughan EE,Vogel RF

    更新日期:2013-04-01 00:00:00

  • Bioactivity: phenylpropanoids' best kept secret.

    abstract::Plant growth and development are tightly regulated by compounds produced in trace amounts in the plant. Besides the classical phytohormones, many plant metabolites have been described to affect plant development. Among these are several phenylpropanoids, although conclusive evidence for their bioactivity at physiologi...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2018.11.012

    authors: Vanholme B,El Houari I,Boerjan W

    更新日期:2019-04-01 00:00:00

  • Poxviruses as expression vectors.

    abstract::Poxviruses are widely used for the cytoplasmic expression of recombinant genes in mammalian cells. Recent improvements allow high expression and simplify the integration of multiple foreign genes. Vaccinia virus mutants and other poxviruses that undergo abortive infection in mammalian cells are receiving special atten...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(97)80031-6

    authors: Carroll MW,Moss B

    更新日期:1997-10-01 00:00:00

  • Electrical contacting of redox proteins by nanotechnological means.

    abstract::Redox enzymes in bioelectronic devices usually lack direct electrical contact with electrodes, owing to the spatial separation of their redox centers from the conductive surfaces by the protein shells. The reconstitution of apo-enzymes on cofactor-functionalized nanostructures associated with electrodes provides a mea...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2006.10.008

    authors: Willner B,Katz E,Willner I

    更新日期:2006-12-01 00:00:00

  • Use of cell wall-less bacteria (L-forms) for efficient expression and secretion of heterologous gene products.

    abstract::In spite of many efforts and achievements to optimize the prokaryotic expression systems, there are still general and specific problems in obtaining sufficient yields of the functionally active gene products. The main problems concern the formation of inclusion bodies, incorrect folding, toxicity for the producer cell...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(98)80037-2

    authors: Gumpert J,Hoischen C

    更新日期:1998-10-01 00:00:00

  • RNA-based dynamic genetic controllers: development strategies and applications.

    abstract::Dynamic regulation of gene expression in response to various molecules is crucial for both basic science and practical applications. RNA is considered an attractive material for creating dynamic genetic controllers because of its specific binding to ligands, structural flexibility, programmability, and small size. Her...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.10.005

    authors: Jang S,Jang S,Yang J,Seo SW,Jung GY

    更新日期:2018-10-01 00:00:00

  • New methods for separation and recovery of biomolecules.

    abstract::New methods and applications in the separation of biomolecules are reviewed, with an emphasis on the large-scale recovery of proteins. Highlights include the advent of flow-through particles in perfusion chromatography, which allows for very high flow rates, while retaining a high chromatographic efficiency. ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(05)80148-x

    authors: Glad M,Larsson PO

    更新日期:1991-06-01 00:00:00

  • Techniques for the experimental investigation of the protein corona.

    abstract::Due to its enormous relevance the corona formation of adsorbed proteins around nanoparticles is widely investigated. A comparison of different experimental techniques is given. Direct measurements of proteins, such as typically performed with mass spectrometry, will be compared with indirect analysis, in which instead...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.02.009

    authors: Carrillo-Carrion C,Carril M,Parak WJ

    更新日期:2017-08-01 00:00:00

  • Advances in the genetics of thermophilic lactic acid bacteria.

    abstract::Molecular genetics of thermophilic lactic acid bacteria has advanced in several directions: exploitation of the milk proteins and sugars; primary and secondary metabolism; stress response; and molecular ecology of bacteria and their phages. These have singularly contributed to open new avenues of scientific interest i...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(00)00134-8

    authors: Delcour J,Ferain T,Hols P

    更新日期:2000-10-01 00:00:00

  • Bypassing glycosylation: engineering aglycosylated full-length IgG antibodies for human therapy.

    abstract::In recent years a number of aglycosylated therapeutic antibodies have entered the clinic. The clinical evaluation of these antibodies has served to dispel concerns that the absence of the ubiquitous N297 glycan in the Fc of IgG might result in immunogenicity, poor in vivo stability or unfavorable pharmacokinetics. Imp...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2011.03.002

    authors: Jung ST,Kang TH,Kelton W,Georgiou G

    更新日期:2011-12-01 00:00:00

  • Progress in computational protein design.

    abstract::Current progress in computational structure-based protein design is reviewed in the areas of methodology and applications. Foundational advances include new potential functions, more efficient ways of computing energetics, flexible treatments of solvent, and useful energy function approximations, as well as ensemble-b...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2007.04.009

    authors: Lippow SM,Tidor B

    更新日期:2007-08-01 00:00:00

  • Polyphenols as antimicrobial agents.

    abstract::Polyphenols are secondary metabolites produced by higher plants, which play multiple essential roles in plant physiology and have potential healthy properties on human organism, mainly as antioxidants, anti-allergic, anti-inflammatory, anticancer, antihypertensive, and antimicrobial agents. In the present review the a...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2011.08.007

    authors: Daglia M

    更新日期:2012-04-01 00:00:00

  • Fungi in lignocellulose breakdown and biopulping

    abstract::Biological pulping has the potential to improve the quality of pulp, properties of paper and to reduce energy costs and environmental impact relative to traditional pulping operations. It has been suggested that energy savings alone could make the process economically viable. Other benefits include improved burst stre...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章

    doi:10.1016/S0958-1669(99)80044-5

    authors: Breen A,Singleton FL

    更新日期:1999-06-01 00:00:00

  • Nucleic acids in the environment.

    abstract::The past year has witnessed several excellent advances in basic and applied research on nucleic acids in the environment. Improved methods for extracting nucleic acids from environmental samples have been published, as well as information on the use of reporter genes in bacteria, natural genetic transformation in soil...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(96)80040-1

    authors: Trevors JT

    更新日期:1996-06-01 00:00:00

  • Alternative non-antibody scaffolds for molecular recognition.

    abstract::Originally proposed one decade ago, the idea of engineering proteins outside the immunoglobulin family for novel binding functions has evolved as a powerful technology. Several classes of protein scaffolds proved to yield reagents with specificities and affinities in a range that was previously considered unique to an...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2007.04.010

    authors: Skerra A

    更新日期:2007-08-01 00:00:00

  • Engineering a local microenvironment for pancreatic islet replacement.

    abstract::Intraportal islet transplantation has emerged as a promising treatment for type 1 diabetes mellitus (T1DM). Nevertheless, long-term efficacy has been limited to a marginal number of patients. Outcomes have been restricted, in part, by challenges associated with the transplant site, poor vascularization, and disruption...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2013.05.004

    authors: Coronel MM,Stabler CL

    更新日期:2013-10-01 00:00:00