Clones from a shooty tobacco crown gall tumor II: irregular T-DNA structures and organization, T-DNA methylation and conditional expression of opine genes.

Abstract:

:Transformed clones from a shooty tobacco crown gall tumor, induced byAgrobacterium tumefaciens strain LBA1501, having the auxin locus of the TL-region inactivated by a Tn1831 insertion, were investigated for their T-DNA structure and expression. It has been described previously (28) that in addition to clones with an expected phenotype (phytohormone independent growth in tissue culture (Aut(+)), shoot regeneration (Reg(+)) and octopine synthesis (Ocs(+))), clones were obtained with an aberrant phenotype. One of these clones, TSO38, is Aut(+)Reg(+) but shows little or no octopine synthesis activity (Ocs(-)). Subclones of TSO38, however, are either Ocs(-) or Ocs(+). Ocs(-) shoots become Ocs(+) under certain states of differentiation, indicating that the octopine synthase gene is present. The fact that in the Ocs(-) subclones the octopine synthase gene is not expressed, is probably due to DNA methylation (29). The present paper describes that shoots derived from both an Ocs(+) and an Ocs(-) subclone of TSO38, which were negative for the presence of mannopine (Mas(-)) and agropine (Ags(-)), became Mas(+)Ags(+) after culturing on medium containing the hypomethylating agent 5-azacytidine. This means that both in the Ocs(-) line and in the Ocs(+) line expression of TR-DNA opine genes most likely was hampered by DNA methylation. The T-DNA structures of an Ocs(-) and an Ocs(+) TSO38 subclone proved to be identical and surprisingly complex. No intact copy of Tn1831 was present. TL-DNA and TR-DNA segments, present in high copy numbers, were truncated; several T-DNA segments existed in tandem arrangements. When DNA from an Ocs(+) and an Ocs(-) subclone of TSO38 were compared for cleavability by the methylation sensitive restriction enzymes HpaII and MspII, differences were detected, but it became also clear that both lines contained methylated T-DNA segments. This indicates that the Ocs(-) and the Ocs(+) TSO38 subclones differ only quantitatively in respect to degree of T-DNA methylation.

journal_name

Plant Mol Biol

journal_title

Plant molecular biology

authors

Peerbolte R,Leenhouts K,Hooykaas-van Slogteren GM,Wullems GJ,Schilperoort RA

doi

10.1007/BF00752901

subject

Has Abstract

pub_date

1986-07-01 00:00:00

pages

285-99

issue

4

eissn

0167-4412

issn

1573-5028

journal_volume

7

pub_type

杂志文章
  • Transactivation of wound-responsive genes containing the core sequence of the auxin-responsive element by a wound-induced protein kinase-activated transcription factor in tobacco plants.

    abstract::Mitogen-activated protein kinases (MAPKs) constitute one of the most critical signaling components in plants. A typical example is wound-induced protein kinase (WIPK), which functions during pathogen responses in tobacco plants (Nicotiana tabacum). Searching for direct down-stream components, we previously isolated a ...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/s11103-007-9240-1

    authors: Chung KM,Sano H

    更新日期:2007-12-01 00:00:00

  • Heterotopic expression of class B floral homeotic genes supports a modified ABC model for tulip (Tulipa gesneriana).

    abstract::In higher eudicotyledonous angiosperms the floral organs are typically arranged in four different whorls, containing sepals, petals, stamens and carpels. According to the ABC model, the identity of these organs is specified by floral homeotic genes of class A, A+B, B+C and C, respectively. In contrast to the sepal and...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1023/a:1025070827979

    authors: Kanno A,Saeki H,Kameya T,Saedler H,Theissen G

    更新日期:2003-07-01 00:00:00

  • Extensive alterations in DNA methylation and transcription in rice caused by introgression from Zizania latifolia.

    abstract::It has been demonstrated that insertion of foreign DNA into mammalian genome can profoundly alter the patterns of DNA methylation and transcription of the host genome. Introgression of alien DNA into plant genomes through sexual crossing and genetic engineering are commonly used in breeding, but it is not known if pla...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1023/B:PLAN.0000038270.48326.7a

    authors: Liu Z,Wang Y,Shen Y,Guo W,Hao S,Liu B

    更新日期:2004-03-01 00:00:00

  • Characterization of the plasma membrane proteins and receptor-like kinases associated with secondary vascular differentiation in poplar.

    abstract::The constituents of plasma membrane proteins, particularly the integral membrane proteins, are closely associated with the differentiation of plant cells. Secondary vascular differentiation, which gives rise to the increase in plant stem diameter, is the key process by which the volume of the plant body grows. However...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/s11103-011-9771-3

    authors: Song D,Xi W,Shen J,Bi T,Li L

    更新日期:2011-05-01 00:00:00

  • 14-3-3 proteins and the response to abiotic and biotic stress.

    abstract::14-3-3 proteins function as regulators of a wide range of target proteins in all eukaryotes by effecting direct protein-protein interactions. Primarily, interactions between 14-3-3 proteins and their targets are mediated by phosphorylation at specific sites on the target protein. Hence, interactions with 14-3-3s are s...

    journal_title:Plant molecular biology

    pub_type: 杂志文章,评审

    doi:10.1023/a:1021261614491

    authors: Roberts MR,Salinas J,Collinge DB

    更新日期:2002-12-01 00:00:00

  • Sequential expression of two 1-aminocyclopropane-1-carboxylate synthase genes in response to biotic and abiotic stresses in potato (Solanum tuberosum L.) leaves.

    abstract::Plants produce ethylene in response to many biotic and abiotic stresses. In response to ozone the foliage of potato plants sequentially expressed two ACC synthase genes (ST-ACS4, ST-ACS5). The same expression pattern of the two genes also occurred in response to Cu2+ and infection with Alternaria solani. ST-ACS5 expre...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1023/a:1005857717196

    authors: Schlagnhaufer CD,Arteca RN,Pell EJ

    更新日期:1997-12-01 00:00:00

  • PCR-generated cDNA library of transition-stage maize embryos: cloning and expression of calmodulin genes during early embryogenesis.

    abstract::One hundred maize zygotic embryos microdissected at the transition stage were used to construct a cDNA library after non-selective PCR (NS-PCR) amplification of whole cDNA populations. The library contains 2.3 x 10(5) recombinants and two different calmodulin cDNAs were cloned using a heterologous probe from petunia. ...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/BF00019182

    authors: Breton C,Chaboud A,Matthys-Rochon E,Bates EE,Cock JM,Fromm H,Dumas C

    更新日期:1995-01-01 00:00:00

  • A pathogen-induced gene of barley encodes a HSP90 homologue showing striking similarity to vertebrate forms resident in the endoplasmic reticulum.

    abstract::The full-length nucleotide sequence of a barley (Hordeum vulgare L.) leaf mRNA, found to increase rapidly in amount during infection attempts by the powdery mildew fungus (Erysiphe graminis DC. ex Mérat), is reported. The mRNA encodes a polypeptide of 809 amino acid residues which, by sequence comparison, was identifi...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/BF00023606

    authors: Walther-Larsen H,Brandt J,Collinge DB,Thordal-Christensen H

    更新日期:1993-03-01 00:00:00

  • Context sequences of translation initiation codon in plants.

    abstract::In this survey of 5074 plant genes for their AUG context sequences, purines are present at the -3 and +4 positions in about 80% of the sequences. Although this observation is similar to the vertebrate consensus sequence, the number of plant mRNAs with purines at the -3 position is lower and at the +4 position is highe...

    journal_title:Plant molecular biology

    pub_type: 杂志文章,评审

    doi:10.1023/a:1005816823636

    authors: Joshi CP,Zhou H,Huang X,Chiang VL

    更新日期:1997-12-01 00:00:00

  • Structure of the parsley caffeoyl-CoA O-methyltransferase gene, harbouring a novel elicitor responsive cis-acting element.

    abstract::The sequence of the S-adenosyl-L-methionine:trans-caffeoyl-CoA O-methyltransferase (CCoAOMT, EC2.1.1.104) gene, including the 5'-flanking region of 5 kb, was determined from parsley (Petroselinum crispum) plants. The enzyme appears to be encoded by one or two genes, and the ORF is arranged in five exons spaced by intr...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1023/a:1005780529457

    authors: Grimmig B,Matern U

    更新日期:1997-01-01 00:00:00

  • Ectopic expression of VlmybA1 in grapevine activates a narrow set of genes involved in anthocyanin synthesis and transport.

    abstract::The colour of the red wine is essentially due to the release of anthocyanins from the red skin of grape berries during the process of wine making. Anthocyanins are synthesized during ripening of the berries under the control of VvMYBA1 transcription factor that controls the expression of UFGT. In order to identify the...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/s11103-008-9446-x

    authors: Cutanda-Perez MC,Ageorges A,Gomez C,Vialet S,Terrier N,Romieu C,Torregrosa L

    更新日期:2009-04-01 00:00:00

  • The chimeric cyclic nucleotide-gated ion channel ATCNGC11/12 constitutively induces programmed cell death in a Ca2+ dependent manner.

    abstract::The hypersensitive response (HR) involves programmed cell death (PCD) in response to pathogen infection. To investigate the pathogen resistance signaling pathway, we previously identified the Arabidopsis mutant cpr22, which displays constitutive activation of multiple defense responses including HR like cell death. Th...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/s11103-007-9239-7

    authors: Urquhart W,Gunawardena AH,Moeder W,Ali R,Berkowitz GA,Yoshioka K

    更新日期:2007-12-01 00:00:00

  • Proximal promoter region of the wheat histone H3 gene confers S phase-specific gene expression in transformed rice cells.

    abstract::The cis-regulatory elements that confer cell cycle-dependent expression to the wheat histone H3 gene were investigated in rice cells (Oc strain) transformed with H3/GUS chimeric genes. 5' deletion mutants of the H3 promoter region (from -1711, -908 or -185 to +57 relative to the transcription start site) were joined t...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/BF00019303

    authors: Ohtsubo N,Nakayama T,Terada R,Shimamoto K,Iwabuchi M

    更新日期:1993-11-01 00:00:00

  • An in silico strategy identified the target gene candidates regulated by dehydration responsive element binding proteins (DREBs) in Arabidopsis genome.

    abstract::Identification of downstream target genes of stress-relating transcription factors (TFs) is desirable in understanding cellular responses to various environmental stimuli. However, this has long been a difficult work for both experimental and computational practices. In this research, we presented a novel computationa...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/s11103-008-9414-5

    authors: Wang S,Yang S,Yin Y,Guo X,Wang S,Hao D

    更新日期:2009-01-01 00:00:00

  • Purification and cDNA sequencing of an oleate-selective acyl-ACP:sn-glycerol-3-phosphate acyltransferase from pea chloroplasts.

    abstract::The soluble acyl-ACP:sn-glycerol-3-phosphate acyltransferase from chloroplasts of chilling-sensitive and -resistant plants differ in their fatty acid selectivity. Enzymes from resistant plants discriminate against non-fluid palmitic acid and select oleic acid whereas the acyltransferase from sensitive plants accepts b...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/BF00037145

    authors: Weber S,Wolter FP,Buck F,Frentzen M,Heinz E

    更新日期:1991-11-01 00:00:00

  • Two S-adenosylmethionine synthetase-encoding genes differentially expressed during adventitious root development in Pinus contorta.

    abstract::Two S-adenosylmethionine synthetase (SAMS) cDNAs, PcSAMS1 and PcSAMS2, have been identified in Pinus contorta. We found that the two genes are differentially expressed during root development. Thus, PcSAMS1 is preferentially expressed in roots and exhibits a specific expression pattern in the meristem at the onset of ...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1023/a:1010637012528

    authors: Lindroth AM,Saarikoski P,Flygh G,Clapham D,Grönroos R,Thelander M,Ronne H,von Arnold S

    更新日期:2001-06-01 00:00:00

  • A temperature-sensitive allele of a putative mRNA splicing helicase down-regulates many cell wall genes and causes radial swelling in Arabidopsis thaliana.

    abstract::The putative RNA helicase encoded by the Arabidopsis gene At1g32490 is a homolog of the yeast splicing RNA helicases Prp2 and Prp22. We isolated a temperature-sensitive allele (rsw12) of the gene in a screen for root radial swelling mutants. Plants containing this allele grown at the restrictive temperature showed wea...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/s11103-016-0428-0

    authors: Howles PA,Gebbie LK,Collings DA,Varsani A,Broad RC,Ohms S,Birch RJ,Cork AH,Arioli T,Williamson RE

    更新日期:2016-05-01 00:00:00

  • Tumor targeting of humanized fragment antibody secreted from transgenic rice cell suspension culture.

    abstract::The tumor-associated glycoprotein 72 (TAG 72) has been shown to be expressed in the majority of human adenocarcinomas. In an effort to develop a technique for the safe and inexpensive production of large quantities of anti-TAG 72 humanized antibody fragments (hzAb) as a future source of clinical-grade proteins, we dev...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/s11103-008-9379-4

    authors: Hong SY,Lee TS,Kim J,Jung JH,Choi CW,Kim TG,Kwon TH,Jang YS,Yang MS

    更新日期:2008-11-01 00:00:00

  • Characterization of a cDNA encoding the protein moiety of a putative arabinogalactan protein from Lycopersicon esculentum.

    abstract::The nucleotide sequence of a cDNA prepared from poly(A)+ RNA from Lycopersicon esculentum fruit codes for a protein, M(r) 20,812, with features representative of the protein core of arabinogalactan proteins. The deduced amino acid sequence resembles that of peptides of arabinogalactan proteins isolated from carrot and...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/BF00020254

    authors: Pogson BJ,Davies C

    更新日期:1995-05-01 00:00:00

  • Functional characterization of four APETALA2-family genes (RAP2.6, RAP2.6L, DREB19 and DREB26) in Arabidopsis.

    abstract::APETALA2 (AP2) transcription factors (TFs) play very important roles in plant growth and development and in defense response. Here, we report functional characterization of four AP2 TF family genes [(RAP2.6 (At1g43160), RAP2.6L (At5g13330), DREB 26 (At1g21910) and DREB19 (At2g38340)] that were identified among NaCl in...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/s11103-010-9711-7

    authors: Krishnaswamy S,Verma S,Rahman MH,Kav NN

    更新日期:2011-01-01 00:00:00

  • Regulatory activity exerted by the SAUR-AC1 promoter region in transgenic plants.

    abstract::SAUR-AC1 is a small-auxin-up-RNA (SAUR) gene of Arabidopsis. Here we demonstrate that the SAUR-AC1 promoter region induces accumulation of a reporter transcript upon treatment with auxin and is preferentially active in elongating hypocotyls and certain other organs and tissues of transgenic Arabidopsis and tobacco pla...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1023/a:1005875300606

    authors: Gil P,Green PJ

    更新日期:1997-07-01 00:00:00

  • Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression.

    abstract::Lysine residue 9 of histone H3 can either be acetylated or mono-, di-, or tri-methylated. These epigenetic states have a diverse impact on regulating gene transcriptional activity and chromatin organization. H3K9ac is invariably correlated with transcriptional activation, whereas H3K9me2 has been reported to be mainly...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/s11103-009-9594-7

    authors: Zhou J,Wang X,He K,Charron JB,Elling AA,Deng XW

    更新日期:2010-04-01 00:00:00

  • RNaseI from Escherichia coli cannot substitute for S-RNase in rejection of Nicotiana plumbaginifolia pollen.

    abstract::Unilateral incompatibility often occurs between self-incompatible (SI) species and their self-compatible (SC) relatives. For example, SI Nicotiana alata rejects pollen from SC N. plumbaginifolia, but the reciprocal pollination is compatible. This interspecific pollen rejection system closely resembles intraspecific S-...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1023/a:1005904230755

    authors: Beecher B,Murfett J,McClure BA

    更新日期:1998-03-01 00:00:00

  • Understanding Darjeeling tea flavour on a molecular basis.

    abstract::Darjeeling teas are the highest grown teas in the world and preferred for its flavour, aroma and quality. Apart from the genetic makeup of the plant, earlier reports suggest that insect infestation, particularly jassids and thrips triggers the aroma and flavour formation in Darjeeling tea. The present work encompasses...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/s11103-012-9887-0

    authors: Gohain B,Borchetia S,Bhorali P,Agarwal N,Bhuyan LP,Rahman A,Sakata K,Mizutani M,Shimizu B,Gurusubramaniam G,Ravindranath R,Kalita MC,Hazarika M,Das S

    更新日期:2012-04-01 00:00:00

  • The HvNAC6 transcription factor: a positive regulator of penetration resistance in barley and Arabidopsis.

    abstract::Pathogens induce the expression of many genes encoding plant transcription factors, though specific knowledge of the biological function of individual transcription factors remains scarce. NAC transcription factors are encoded in plants by a gene family with proposed functions in both abiotic and biotic stress adaptat...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/s11103-007-9204-5

    authors: Jensen MK,Rung JH,Gregersen PL,Gjetting T,Fuglsang AT,Hansen M,Joehnk N,Lyngkjaer MF,Collinge DB

    更新日期:2007-09-01 00:00:00

  • An alfalfa mosaic virus RNA 2 mutant, which does not induce a hypersensitive reaction in cowpea plants, is multiplied to a high concentration in cowpea protoplasts.

    abstract::A mutant of alfalfa mosaic virus (AMV), which in contrast to wild type (wt) can invade cowpea plants systemically, is replicated more efficiently in cowpea protoplasts than the wt. Mutant preparations isolated from infected cowpea protoplasts contained a higher amount of middle component (M, containing RNA 2) than wt ...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/BF01595169

    authors: Roosien J,Sarachu AN,Alblas F,Van Vloten-Doting L

    更新日期:1983-03-01 00:00:00

  • Temporally regulated expression of a yeast invertase in potato tubers allows dissection of the complex metabolic phenotype obtained following its constitutive expression.

    abstract::The constitutive cytosolic expression of a yeast ( Saccharomyces cerevisiae ) invertase within potato ( Solanum tuberosum ) tubers has previously been documented to produce a dramatic metabolic phenotype in which glycolysis, respiration and amino acid synthesis are markedly enhanced at the cost of starch synthesis. Th...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/s11103-004-2525-8

    authors: Junker BH,Wuttke R,Tiessen A,Geigenberger P,Sonnewald U,Willmitzer L,Fernie AR

    更新日期:2004-09-01 00:00:00

  • Overexpression of HbMBF1a, encoding multiprotein bridging factor 1 from the halophyte Hordeum brevisubulatum, confers salinity tolerance and ABA insensitivity to transgenic Arabidopsis thaliana.

    abstract:KEY MESSAGE:HbMBF1a was isolated and characterized in H. brevisubulatum, and overexpressed HbMBF1a could enhance the salt tolerance and ABA insensitivity in Arabidopsis thaliana. The transcript levels of stress-responsive genes were significantly increased in the transgenic lines under salt and ABA conditions. Salinity...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/s11103-019-00926-7

    authors: Zhang L,Wang Y,Zhang Q,Jiang Y,Zhang H,Li R

    更新日期:2020-01-01 00:00:00

  • Down-regulation of the maize and Arabidopsis thaliana caffeic acid O-methyl-transferase genes by two new maize R2R3-MYB transcription factors.

    abstract::The maize (Zea mays L.) caffeic acid O-methyl-transferase (COMT) is a key enzyme in the biosynthesis of lignin. In this work we have characterized the involvement of COMT in the lignification process through the study of the molecular mechanisms involved in its regulation. The examination of the maize COMT gene promot...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1007/s11103-006-9058-2

    authors: Fornalé S,Sonbol FM,Maes T,Capellades M,Puigdomènech P,Rigau J,Caparrós-Ruiz D

    更新日期:2006-12-01 00:00:00

  • Zrp2: a novel maize gene whose mRNA accumulates in the root cortex and mature stems.

    abstract::A near full-length cDNA clone (pZRP2) was isolated from a cDNA library constructed from maize root mRNAs. The predicted polypeptide has a calculated molecular mass of 66,975 Da, is largely hydrophilic, and contains 26 repeats of a motif the consensus sequence of which is RKATTSYG[S][D/E][D/E][D/E][D/E][P]. The functio...

    journal_title:Plant molecular biology

    pub_type: 杂志文章

    doi:10.1023/a:1005830313272

    authors: Held BM,John I,Wang H,Moragoda L,Tirimanne TS,Wurtele ES,Colbert JT

    更新日期:1997-10-01 00:00:00