Evidence for coronavirus discontinuous transcription.

Abstract:

:Coronavirus subgenomic mRNA possesses a 5'-end leader sequence which is derived from the 5' end of genomic RNA and is linked to the mRNA body sequence. This study examined whether coronavirus transcription involves a discontinuous transcription step; the possibility that a leader sequence from mouse hepatitis virus (MHV) genomic RNA could be used for MHV subgenomic defective interfering (DI) RNA transcription was examined. This was tested by using helper viruses and DI RNAs that were easily distinguishable. MHV JHM variant JHM(2), which synthesizes a subgenomic mRNA encoding the HE gene, and variant JHM(3-9), which does not synthesize this mRNA, were used. An MHV DI RNA, DI(J3-9), was constructed to contain a JHM(3-9)-derived leader sequence and an inserted intergenic region derived from the region preceding the MHV JHM HE gene. DI(J3-9) replicated efficiently in JHM(2)- or JHM(3-9)-infected cells, whereas synthesis of subgenomic DI RNAs was observed only in JHM(2)-infected cells. Sequence analyses demonstrated that the 5' regions of both helper virus genomic RNAs and genomic DI RNAs maintained their original sequences in DI RNA-replicating cells, indicating that the genomic leader sequences derived from JHM(2) functioned for subgenomic DI RNA transcription. Replication and transcription of DI(J3-9) were observed in cells infected with an MHV A59 strain whose leader sequence was similar to that of JHM(2), except for one nucleotide substitution within the leader sequence. The 5' region of the helper virus genomic RNA and that of the DI RNA were the same as their original structures in virus-infected cells, and the leader sequence of DI(J3-9) subgenomic DI RNA contained the MHV A59-derived leader sequence. The leader sequence of subgenomic DI RNA was derived from that of helper virus; therefore, the genomic leader sequence had a trans-acting property indicative of a discontinuous step in coronavirus transcription.

journal_name

J Virol

journal_title

Journal of virology

authors

Jeong YS,Makino S

doi

10.1128/JVI.68.4.2615-2623.1994

subject

Has Abstract

pub_date

1994-04-01 00:00:00

pages

2615-23

issue

4

eissn

0022-538X

issn

1098-5514

journal_volume

68

pub_type

杂志文章
  • Sequence analysis of amphotropic and 10A1 murine leukemia viruses: close relationship to mink cell focus-inducing viruses.

    abstract::Viral interference studies have demonstrated the existence of four distinct murine leukemia virus (MuLV) receptors on NIH 3T3 mouse cells. The four viral interference groups are ecotropic MuLV; mink cell focus inducing virus (MCF); amphotropic MuLV; and 10A1, a recombinant derivative of amphotropic MuLV that uses a un...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.64.2.757-766.1990

    authors: Ott D,Friedrich R,Rein A

    更新日期:1990-02-01 00:00:00

  • Interactions of murine leukemia virus core components: characterization of reverse transcriptase packaged in the absence of 70S genomic RNA.

    abstract::Virions produced by cells in the presence of actinomycin D (Act D virions) contain reverse transcriptase but are deficient in 70S genomic RNA. To assess the role of genomic RNA in encapsidation of a functional reverse transcriptase and to study the interaction of the enzyme and its template in the cores of intact viri...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.24.2.478-488.1977

    authors: Gerwin BI,Levin JG

    更新日期:1977-11-01 00:00:00

  • Growth of bacteriophage phi 105 and its deoxyribonucleic acid in radiation-sensitive mutants of Bacillus subtilis.

    abstract::Growth of phage phi105 and its deoxyribonucleic acid (DNA) was studied in radiation-sensitive mutants of Bacillus subtilis. The recA gene is required for optimal prophage induction with mitomycin C and for infectivity of prophage DNA. rec B gene is required for marker rescue from mature DNA. The importance of bacteria...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.8.6.919-921.1971

    authors: Rutberg B,Rutberg L

    更新日期:1971-12-01 00:00:00

  • Herpes simplex virus 1 ICP22 regulates the accumulation of a shorter mRNA and of a truncated US3 protein kinase that exhibits altered functions.

    abstract::The U(S)3 open reading frame of herpes simplex virus 1 (HSV-1) was reported to encode two mRNAs each directing the synthesis of the same protein. We report that the U(S)3 gene encodes two proteins. The predominant U(S)3 protein is made in wild-type HSV-1-infected cells. The truncated mRNA and a truncated protein desig...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.13.8470-8479.2005

    authors: Poon AP,Roizman B

    更新日期:2005-07-01 00:00:00

  • The R region found in the human foamy virus long terminal repeat is critical for both Gag and Pol protein expression.

    abstract::It has been suggested that sequences located within the 5' noncoding region of human foamy virus (HFV) are critical for expression of the viral Gag and Pol structural proteins. Here, we identify a discrete approximately 151-nucleotide sequence, located within the R region of the HFV long terminal repeat, that activate...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.75.15.6817-6824.2001

    authors: Russell RA,Zeng Y,Erlwein O,Cullen BR,McClure MO

    更新日期:2001-08-01 00:00:00

  • Retargeting of coronavirus by substitution of the spike glycoprotein ectodomain: crossing the host cell species barrier.

    abstract::Coronaviruses generally have a narrow host range, infecting one or just a few species. Using targeted RNA recombination, we constructed a mutant of the coronavirus mouse hepatitis virus (MHV) in which the ectodomain of the spike glycoprotein (S) was replaced with the highly divergent ectodomain of the S protein of fel...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.3.1393-1406.2000

    authors: Kuo L,Godeke GJ,Raamsman MJ,Masters PS,Rottier PJ

    更新日期:2000-02-01 00:00:00

  • Development of a cellular assay system to study the genome replication of high- and low-risk mucosal and cutaneous human papillomaviruses.

    abstract::We found that recircularized high-risk (type 16 and 18) and low-risk mucosal (type 6b and 11) and cutaneous (type 5 and 8) human papillomavirus (HPV) genomes replicate readily when delivered into U2OS cells by electroporation. The replication efficiency is dependent on the amount of input HPV DNA and can be followed f...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01985-10

    authors: Geimanen J,Isok-Paas H,Pipitch R,Salk K,Laos T,Orav M,Reinson T,Ustav M Jr,Ustav M,Ustav E

    更新日期:2011-04-01 00:00:00

  • A bromodomain-containing protein from tomato specifically binds potato spindle tuber viroid RNA in vitro and in vivo.

    abstract::For the identification of RNA-binding proteins that specifically interact with potato spindle tuber viroid (PSTVd), we subjected a tomato cDNA expression library prepared from viroid-infected leaves to an RNA ligand screening procedure. We repeatedly identified cDNA clones that expressed a protein of 602 amino acids. ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.77.17.9685-9694.2003

    authors: Martínez de Alba AE,Sägesser R,Tabler M,Tsagris M

    更新日期:2003-09-01 00:00:00

  • Analysis of structural proteins of purified murine cytomegalovirus.

    abstract::Murine cytomegalovirus propagated in mouse embryo fibroblasts was purified by the following procedures. (i) Extracellular virus was concentrated by centrifugation at 100,000 x g for 90 min. (ii) The concentrated virus was passed through a Bio-Rad Bio-Gel A-15m column to eliminate contaminating materials smaller than 1...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.17.3.906-915.1976

    authors: Kim KS,Sapienza VJ,Carp RI,Moon HM

    更新日期:1976-03-01 00:00:00

  • Neutralizing IgG at the portal of infection mediates protection against vaginal simian/human immunodeficiency virus challenge.

    abstract::Neutralizing antibodies may have critical importance in immunity against human immunodeficiency virus type 1 (HIV-1) infection. However, the amount of protective antibody needed at mucosal surfaces has not been fully established. Here, we evaluated systemic and mucosal pharmacokinetics (PK) and pharmacodynamics (PD) o...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01361-13

    authors: Klein K,Veazey RS,Warrier R,Hraber P,Doyle-Meyers LA,Buffa V,Liao HX,Haynes BF,Shaw GM,Shattock RJ

    更新日期:2013-11-01 00:00:00

  • Human T-cell leukemia virus type I envelope protein maturation process: requirements for syncytium formation.

    abstract::The human T-cell leukemia virus type I (HTLV-I) envelope protein is synthesized as a gp61 precursor product cleaved into two mature proteins, a gp45 exterior protein and a gp20 anchoring the envelope at the cell membrane. Using N-glycosylation inhibitors and site-directed mutagenesis of the potential glycosylation sit...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.66.2.906-913.1992

    authors: Pique C,Pham D,Tursz T,Dokhélar MC

    更新日期:1992-02-01 00:00:00

  • Novel postentry resistance to AKV ecotropic mouse gammaretroviruses in the African pygmy mouse, Mus minutoides.

    abstract::Cells of Mus minutoides, an African pygmy mouse of the subgenus Nannomys, are susceptible to ecotropic Moloney and Friend mouse leukemia viruses (MLVs) but not to AKV-type MLVs. Transfected MA139 ferret cells expressing the mCAT-1 cell surface receptor, with the minCAT-1 substitutions K222Q and V233L, did not restrict...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00202-08

    authors: Yan Y,Kozak CA

    更新日期:2008-07-01 00:00:00

  • Regulation of autophagic activation by Rta of Epstein-Barr virus via the extracellular signal-regulated kinase pathway.

    abstract::Autophagy is an intracellular degradation pathway that provides a host defense mechanism against intracellular pathogens. However, many viruses exploit this mechanism to promote their replication. This study shows that lytic induction of Epstein-Barr virus (EBV) increases the membrane-bound form of LC3 (LC3-II) and LC...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02033-14

    authors: Hung CH,Chen LW,Wang WH,Chang PJ,Chiu YF,Hung CC,Lin YJ,Liou JY,Tsai WJ,Hung CL,Liu ST

    更新日期:2014-10-01 00:00:00

  • IRF-3 activation by Sendai virus infection is required for cellular apoptosis and avoidance of persistence.

    abstract::Here, we report that specific manipulations of the cellular response to virus infection can cause prevention of apoptosis and consequent establishment of persistent infection. Infection of several human cell lines with Sendai virus (SeV) or human parainfluenza virus 3, two prototypic paramyxoviruses, caused slow apopt...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02536-07

    authors: Peters K,Chattopadhyay S,Sen GC

    更新日期:2008-04-01 00:00:00

  • A27L protein mediates vaccinia virus interaction with cell surface heparan sulfate.

    abstract::Vaccinia virus has a wide host range and infects mammalian cells of many different species. This suggests that the cell surface receptors for vaccinia virus are ubiquitously expressed and highly conserved. Alternatively, different receptors are used for vaccinia virus infection of different cell types. Here we report ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.2.1577-1585.1998

    authors: Chung CS,Hsiao JC,Chang YS,Chang W

    更新日期:1998-02-01 00:00:00

  • Functional Incompatibility between the Generic NF-κB Motif and a Subtype-Specific Sp1III Element Drives the Formation of the HIV-1 Subtype C Viral Promoter.

    abstract:UNLABELLED:Of the various genetic subtypes of human immunodeficiency virus types 1 and 2 (HIV-1 and HIV-2) and simian immunodeficiency virus (SIV), only in subtype C of HIV-1 is a genetically variant NF-κB binding site found at the core of the viral promoter in association with a subtype-specific Sp1III motif. How the ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00308-16

    authors: Verma A,Rajagopalan P,Lotke R,Varghese R,Selvam D,Kundu TK,Ranga U

    更新日期:2016-07-27 00:00:00

  • Tissue-specific expression of human provirus ERV3 mRNA in human placenta: two of the three ERV3 mRNAs contain human cellular sequences.

    abstract::Three polyadenylated RNAs, 9, 7.3, and 3.5 kilobases long, of a human endogenous retrovirus, ERV3, are abundant in human placental chorion, representing about 0.03 to 0.05% of the total mRNA. We characterized the structure of these mRNAs by Northern blot and S1 nuclease mapping analyses. We found that all three RNAs w...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.61.7.2182-2191.1987

    authors: Kato N,Pfeifer-Ohlsson S,Kato M,Larsson E,Rydnert J,Ohlsson R,Cohen M

    更新日期:1987-07-01 00:00:00

  • Structural analysis of respiratory syncytial virus reveals the position of M2-1 between the matrix protein and the ribonucleoprotein complex.

    abstract:UNLABELLED:Respiratory syncytial virus (RSV), a member of the Paramyxoviridae family of nonsegmented, negative-sense, single-stranded RNA genome viruses, is a leading cause of lower respiratory tract infections in infants, young children, and the elderly or immunocompromised. There are many open questions regarding the...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00256-14

    authors: Kiss G,Holl JM,Williams GM,Alonas E,Vanover D,Lifland AW,Gudheti M,Guerrero-Ferreira RC,Nair V,Yi H,Graham BS,Santangelo PJ,Wright ER

    更新日期:2014-07-01 00:00:00

  • Structure and expression of tat-, rev-, and nef-specific transcripts of human immunodeficiency virus type 1 in infected lymphocytes and macrophages.

    abstract::Primary RNA transcripts from the human immunodeficiency virus type 1 (HIV-1) are processed into mature mRNA by a complex series of splicing events. Viral structural proteins and reverse transcriptase are translated from unspliced or singly spliced transcripts. Proteins which control virus replication, including tat, r...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.64.7.3391-3398.1990

    authors: Robert-Guroff M,Popovic M,Gartner S,Markham P,Gallo RC,Reitz MS

    更新日期:1990-07-01 00:00:00

  • Regulated expression of a Sindbis virus replicon by herpesvirus promoters.

    abstract::We describe the use of herpesvirus promoters to regulate the expression of a Sindbis virus replicon (SINrep/LacZ). We isolated cell lines that contain the cDNA of SINrep/LacZ under the control of a promoter from a herpesvirus early gene which requires regulatory proteins encoded by immediate-early genes for expression...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.73.3.1998-2005.1999

    authors: Ivanova L,Schlesinger S,Olivo PD

    更新日期:1999-03-01 00:00:00

  • Integration of proviral DNA in chicken cells infected with Schmidt-Ruppin Rous sarcoma virus is not enhanced by DNA repair.

    abstract::The effect DNA repair might have on the integration of exogenous proviral DNA into host cell DNA was investigated by comparing the efficiency of proviral DNA integration in normal chicken embryonic fibroblasts and in chicken embryonic fibroblasts treated with UV or 4-nitroquinoline-1-oxide. The cells were treated with...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.23.3.533-542.1977

    authors: Tsuruo T,Baluda MA

    更新日期:1977-09-01 00:00:00

  • HLA class I-mediated control of HIV-1 in the Japanese population, in which the protective HLA-B*57 and HLA-B*27 alleles are absent.

    abstract::We investigated the effect of HLA class I alleles on clinical parameters for HIV-1 disease progression in the Japanese population, where two strongly protective alleles, HLA-B*57 and HLA-B*27, are virtually nonexistent. HLA-B alleles showed a dominant role, primarily through HLA-B*67:01 and the HLA-B*52:01-C*12:02 hap...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00689-12

    authors: Naruto T,Gatanaga H,Nelson G,Sakai K,Carrington M,Oka S,Takiguchi M

    更新日期:2012-10-01 00:00:00

  • Hydroxyurea-resistant vaccinia virus: overproduction of ribonucleotide reductase.

    abstract::Repeated passages of vaccinia virus in increasing concentrations of hydroxyurea followed by plaque purification resulted in the isolation of variants capable of growth in 5 mM hydroxyurea, a drug concentration which inhibited the reproduction of wild-type vaccinia virus 1,000-fold. Analyses of viral protein synthesis ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.60.2.506-514.1986

    authors: Slabaugh MB,Mathews CK

    更新日期:1986-11-01 00:00:00

  • Hepatitis B virus with mutations in the core promoter for an e antigen-negative phenotype in carriers with antibody to e antigen.

    abstract::Hepatitis B virus (HBV) DNA clones were propagated from 57 carriers with antibody to hepatitis B e antigen (HBeAg) and sequenced within nucleotides (nt) 1685 to 1926 including the core promoter (nt 1742 to 1849) and the pre-C region (nt 1814 to 1900). Mutations in the core promoter or those in the pre-C region, or bot...

    journal_title:Journal of virology

    pub_type: 临床试验,杂志文章

    doi:10.1128/JVI.68.12.8102-8110.1994

    authors: Okamoto H,Tsuda F,Akahane Y,Sugai Y,Yoshiba M,Moriyama K,Tanaka T,Miyakawa Y,Mayumi M

    更新日期:1994-12-01 00:00:00

  • Interferon-inducible protein IFI35 negatively regulates RIG-I antiviral signaling and supports vesicular stomatitis virus replication.

    abstract:UNLABELLED:In a genome-wide small interfering RNA (siRNA) screen, we recently identified the interferon (IFN)-inducible protein 35 (IFI35; also known as IFP35) as a factor required for vesicular stomatitis virus (VSV) infection. Studies reported here were conducted to further understand the role and requirement of IFI3...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.03202-13

    authors: Das A,Dinh PX,Panda D,Pattnaik AK

    更新日期:2014-03-01 00:00:00

  • Norovirus genome circularization and efficient replication are facilitated by binding of PCBP2 and hnRNP A1.

    abstract::Sequences and structures within the terminal genomic regions of plus-strand RNA viruses are targets for the binding of host proteins that modulate functions such as translation, RNA replication, and encapsidation. Using murine norovirus 1 (MNV-1), we describe the presence of long-range RNA-RNA interactions that were s...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.03433-12

    authors: López-Manríquez E,Vashist S,Ureña L,Goodfellow I,Chavez P,Mora-Heredia JE,Cancio-Lonches C,Garrido E,Gutiérrez-Escolano AL

    更新日期:2013-11-01 00:00:00

  • Pathogenesis of Influenza D Virus in Cattle.

    abstract:UNLABELLED:Cattle have been proposed as the natural reservoir of a novel member of the virus family Orthomyxoviridae, which has been tentatively classified as influenza D virus (IDV). Although isolated from sick animals, it is unclear whether IDV causes any clinical disease in cattle. To address this aspect of Koch's p...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.03122-15

    authors: Ferguson L,Olivier AK,Genova S,Epperson WB,Smith DR,Schneider L,Barton K,McCuan K,Webby RJ,Wan XF

    更新日期:2016-05-27 00:00:00

  • Continued synthesis of bacterial DNA after infection by bacteriophage T4.

    abstract::Early in infection by bacteriophage T4, before replication has commenced, one can detect the presence of newly synthesized DNA which cosediments with parental phage DNA on sucrose gradients. As shown earlier (R. E. Murray and C. K. Mathews, 1969), some of this represents covalent attachment of new material to parental...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.13.4.847-857.1974

    authors: Scofield MS,Collinsworth WL,Mathews CK

    更新日期:1974-04-01 00:00:00

  • Cells persistently infected with newcastle disease virus: I. Properties of mutants isolated from persistently infected L cells.

    abstract::The strain of Newcastle disease virus (NDV(pi)) present in persistently infected L cells differed markedly from the Herts strain (NDV(0)) used to initiate the infection. NDV(pi) produced small plaques (less than 1 mm) in chick embryo cell cultures, whereas the wild type (NDV(0)) produced large plaques (2 to 3 mm). The...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.4.3.244-251.1969

    authors: Thacore H,Youngner JS

    更新日期:1969-09-01 00:00:00

  • Weak cis and trans Interactions of the Hemagglutinin with Receptors Trigger Fusion Proteins of Neuropathogenic Measles Virus Isolates.

    abstract::Measles virus (MeV) is an enveloped RNA virus bearing two envelope glycoproteins, the hemagglutinin (H) and fusion (F) proteins. Upon receptor binding, the H protein triggers conformational changes of the F protein, causing membrane fusion and subsequent virus entry. MeV may persist in the brain, infecting neurons and...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01727-19

    authors: Shirogane Y,Hashiguchi T,Yanagi Y

    更新日期:2020-01-06 00:00:00