Scoring functions for protein-protein interactions.

Abstract:

:The computational evaluation of protein-protein interactions will play an important role in organising the wealth of data being generated by high-throughput initiatives. Here we discuss future applications, report recent developments and identify areas requiring further investigation. Many functions have been developed to quantify the structural and energetic properties of interacting proteins, finding use in interrelated challenges revolving around the relationship between sequence, structure and binding free energy. These include loop modelling, side-chain refinement, docking, multimer assembly, affinity prediction, affinity change upon mutation, hotspots location and interface design. Information derived from models optimised for one of these challenges can be used to benefit the others, and can be unified within the theoretical frameworks of multi-task learning and Pareto-optimal multi-objective learning.

journal_name

Curr Opin Struct Biol

authors

Moal IH,Moretti R,Baker D,Fernández-Recio J

doi

10.1016/j.sbi.2013.06.017

subject

Has Abstract

pub_date

2013-12-01 00:00:00

pages

862-7

issue

6

eissn

0959-440X

issn

1879-033X

pii

S0959-440X(13)00120-6

journal_volume

23

pub_type

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