Quantitative analysis of cardiac tissue including fibroblasts using three-dimensional confocal microscopy and image reconstruction: towards a basis for electrophysiological modeling.

Abstract:

:Electrophysiological modeling of cardiac tissue is commonly based on functional and structural properties measured in experiments. Our knowledge of these properties is incomplete, in particular their remodeling in disease. Here, we introduce a methodology for quantitative tissue characterization based on fluorescent labeling, 3-D scanning confocal microscopy, image processing and reconstruction of tissue micro-structure at sub-micrometer resolution. We applied this methodology to normal rabbit ventricular tissue and tissue from hearts with myocardial infarction. Our analysis revealed that the volume fraction of fibroblasts increased from 4.83±0.42% (mean ± standard deviation) in normal tissue up to 6.51±0.38% in myocardium from infarcted hearts. The myocyte volume fraction decreased from 76.20±9.89% in normal to 73.48±8.02% adjacent to the infarct. Numerical field calculations on 3-D reconstructions of the extracellular space yielded an extracellular longitudinal conductivity of 0.264±0.082 S/m with an anisotropy ratio of 2.095±1.11 in normal tissue. Adjacent to the infarct, the longitudinal conductivity increased up to 0.400±0.051 S/m, but the anisotropy ratio decreased to 1.295±0.09. Our study indicates an increased density of gap junctions proximal to both fibroblasts and myocytes in infarcted versus normal tissue, supporting previous hypotheses of electrical coupling of fibroblasts and myocytes in infarcted hearts. We suggest that the presented methodology provides an important contribution to modeling normal and diseased tissue. Applications of the methodology include the clinical characterization of disease-associated remodeling.

journal_name

IEEE Trans Med Imaging

authors

Schwab BC,Seemann G,Lasher RA,Torres NS,Wulfers EM,Arp M,Carruth ED,Bridge JH,Sachse FB

doi

10.1109/TMI.2013.2240693

subject

Has Abstract

pub_date

2013-05-01 00:00:00

pages

862-72

issue

5

eissn

0278-0062

issn

1558-254X

journal_volume

32

pub_type

杂志文章
  • Deep Geodesic Learning for Segmentation and Anatomical Landmarking.

    abstract::In this paper, we propose a novel deep learning framework for anatomy segmentation and automatic landmarking. Specifically, we focus on the challenging problem of mandible segmentation from cone-beam computed tomography (CBCT) scans and identification of 9 anatomical landmarks of the mandible on the geodesic space. Th...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2018.2875814

    authors: Torosdagli N,Liberton DK,Verma P,Sincan M,Lee JS,Bagci U

    更新日期:2019-04-01 00:00:00

  • Experimental evaluation of two iterative reconstruction methods for induced current electrical impedance tomography.

    abstract::The Newton-Raphson (N-R) with two different regularization methods: the Levenberg-Marquardt (N-R-LM) and the Hachtel's Augmented Matrix (N-R-HAM), were used to reconstruct images of conductivity changes in a cylindrical medium by Induced Current Electrical Impedance Tomography (ic-EIT). Experimental data were obtained...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.491419

    authors: Ruan W,Guardo R,Adler A

    更新日期:1996-01-01 00:00:00

  • Multislice radio-frequency current density imaging.

    abstract::Radio-frequency current density imaging (RF-CDI) is an imaging technique that noninvasively measures current density distribution at the Larmor frequency utilizing magnetic resonance imaging (MRI). Previously implemented RF-CDI techniques were only able to image a single slice transverse to the static magnetic field B...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2008.2012161

    authors: Wang D,DeMonte TP,Ma W,Joy ML,Nachman AI

    更新日期:2009-07-01 00:00:00

  • Imaging the distribution of magnetic nanoparticles with ultrasound.

    abstract::Magnetic nanoparticles can be caused to oscillate under the influence of an incident ultrasonic wave. If the particles are momentarily aligned with a magnetizing pulse creating a macroscopic magnetization, this oscillation will result in a time-varying magnetic moment which should be detectable as an induced voltage i...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2007.895476

    authors: Norton SJ,Vo-Dinh T

    更新日期:2007-05-01 00:00:00

  • MRI of moving subjects using multislice snapshot images with volume reconstruction (SVR): application to fetal, neonatal, and adult brain studies.

    abstract::Motion degrades magnetic resonance (MR) images and prevents acquisition of self-consistent and high-quality volume images. A novel methodology, Snapshot magnetic resonance imaging (MRI) with Volume Reconstruction (SVR) has been developed for imaging moving subjects at high resolution and high signal-to-noise ratio (SN...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2007.895456

    authors: Jiang S,Xue H,Glover A,Rutherford M,Rueckert D,Hajnal JV

    更新日期:2007-07-01 00:00:00

  • Dynamic Cell Imaging in PET With Optimal Transport Regularization.

    abstract::We propose a novel dynamic image reconstruction method from PET listmode data that could be particularly suited to tracking single or small numbers of cells. In contrast to conventional PET reconstruction our method combines the information from all detected events not only to reconstruct the dynamic evolution of the ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2019.2953773

    authors: Schmitzer B,Schafers KP,Wirth B

    更新日期:2020-05-01 00:00:00

  • Improved Sensitivity in Ultrasound Molecular Imaging With Coherence-Based Beamforming.

    abstract::Ultrasound molecular imaging (USMI) is accomplished by detecting microbubble (MB) contrast agents that have bound to specific biomarkers, and can be used for a variety of imaging applications, such as the early detection of cancer. USMI has been widely utilized in preclinical imaging in mice; however, USMI in humans c...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2017.2774814

    authors: Hyun D,Abou-Elkacem L,Perez VA,Chowdhury SM,Willmann JK,Dahl JJ

    更新日期:2018-01-01 00:00:00

  • Investigation of Axial and Angular Sampling in Multi-Detector Pinhole-SPECT Brain Imaging.

    abstract::We designed a dedicated multi-detector multi-pinhole brain SPECT scanner to generate images of higher quality compared to general-purpose systems. The system, AdaptiSPECT-C, is intended to adapt its sensitivity-resolution trade-off by varying its aperture configurations allowing both high-sensitivity dynamic and high-...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2020.3015079

    authors: Zeraatkar N,Kalluri KS,Auer B,Konik A,Fromme TJ,Furenlid LR,Kuo PH,King MA

    更新日期:2020-12-01 00:00:00

  • Medusa: a scalable MR console using USB.

    abstract::Magnetic resonance imaging (MRI) pulse sequence consoles typically employ closed proprietary hardware, software, and interfaces, making difficult any adaptation for innovative experimental technology. Yet MRI systems research is trending to higher channel count receivers, transmitters, gradient/shims, and unique inter...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2011.2169681

    authors: Stang PP,Conolly SM,Santos JM,Pauly JM,Scott GC

    更新日期:2012-02-01 00:00:00

  • The GEM MAP algorithm with 3-D SPECT system response.

    abstract::In single photon emission computed tomography (SPECT), every reconstruction algorithm must use some model for the response of the gamma camera to emitted gamma-rays. The true camera response is both spatially variant and object dependent. These two properties result from the effects of scatter, septal penetration, and...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.126914

    authors: Hebert TJ,Gopal SS

    更新日期:1992-01-01 00:00:00

  • Stopping Rule for the MLE Algorithm Based on Statistical Hypothesis Testing.

    abstract::It is known that when the maximum likelihood estimator (MLE) algorithm passes a certain point, it produces images that begin to deteriorate. We propose a quantitative criterion with a simple probabilistic interpretation that allows the user to stop the algorithm just before this effect begins. The MLE algorithm search...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.1987.4307849

    authors: Veklerov E,Llacer J

    更新日期:1987-01-01 00:00:00

  • Ultra fast symmetry and SIMD-based projection-backprojection (SSP) algorithm for 3-D PET image reconstruction.

    abstract::Remarkable progress in positron emission tomography (PET) development has occurred in recent years, in hardware, software, and computer implementation of image reconstruction. Recent development in PET scanners such as the high-resolution research tomograph (HRRT) developed by CTI (now Siemens) represents such a case ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/tmi.2007.892644

    authors: Hong IK,Chung ST,Kim HK,Kim YB,Son YD,Cho ZH

    更新日期:2007-06-01 00:00:00

  • Adaptive Clutter Demodulation for Non-Contrast Ultrasound Perfusion Imaging.

    abstract::Conventional Doppler ultrasound is useful for visualizing fast blood flow in large resolvable vessels. However, frame rate and tissue clutter caused by movement of the patient or sonographer make visualizing slow flow with ultrasound difficult. Patient and sonographer motion causes spectral broadening of the clutter s...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2017.2714901

    authors: Tierney J,Coolbaugh C,Towse T,Byram B

    更新日期:2017-09-01 00:00:00

  • Fast catheter segmentation from echocardiographic sequences based on segmentation from corresponding X-ray fluoroscopy for cardiac catheterization interventions.

    abstract::Echocardiography is a potential alternative to X-ray fluoroscopy in cardiac catheterization given its richness in soft tissue information and its lack of ionizing radiation. However, its small field of view and acoustic artifacts make direct automatic segmentation of the catheters very challenging. In this study, a fa...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2014.2360988

    authors: Wu X,Housden J,Ma Y,Razavi B,Rhode K,Rueckert D

    更新日期:2015-04-01 00:00:00

  • Spatial-resolution enhancement in computed tomography.

    abstract::We propose an approach that combines an asymmetric fan-beam configuration and a new reconstruction algorithm to enhancing spatial resolution in computed tomography (CT). The asymmetric configuration can be achieved by changing the center of rotation (COR) from the conventional symmetric configuration. It does not, how...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/tmi.2004.840846

    authors: Pan X,Yu L,Kao CM

    更新日期:2005-02-01 00:00:00

  • Classification of malignant and benign masses based on hybrid ART2LDA approach.

    abstract::A new type of classifier combining an unsupervised and a supervised model was designed and applied to classification of malignant and benign masses on mammograms. The unsupervised model was based on an adaptive resonance theory (ART2) network which clustered the masses into a number of separate classes. The classes we...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.819327

    authors: Hadjiiski L,Sahiner B,Chan HP,Petrick N,Helvie M

    更新日期:1999-12-01 00:00:00

  • Block-iterative Fisher scoring algorithms for maximum penalized likelihood image reconstruction in emission tomography.

    abstract::This paper introduces and evaluates a block-iterative Fisher scoring (BFS) algorithm. The algorithm provides regularized estimation in tomographic models of projection data with Poisson variability. Regularization is achieved by penalized likelihood with a general quadratic penalty. Local convergence of the block-iter...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2008.918355

    authors: Ma J,Hudson M

    更新日期:2008-08-01 00:00:00

  • Computer-Aided Cervical Cancer Diagnosis Using Time-Lapsed Colposcopic Images.

    abstract::Cervical cancer causes the fourth most cancer-related deaths of women worldwide. Early detection of cervical intraepithelial neoplasia (CIN) can significantly increase the survival rate of patients. In this paper, we propose a deep learning framework for the accurate identification of LSIL+ (including CIN and cervical...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2020.2994778

    authors: Li Y,Chen J,Xue P,Tang C,Chang J,Chu C,Ma K,Li Q,Zheng Y,Qiao Y

    更新日期:2020-11-01 00:00:00

  • Quantification of MR brain images by mixture density and partial volume modeling.

    abstract::The problem of automatic quantification of brain tissue by utilizing single-valued (single echo) magnetic resonance imaging (MRI) brain scans is addressed. It is shown that this problem can be solved without classification or segmentation, a method that may be particularly useful in quantifying white matter lesions wh...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.241885

    authors: Santago P,Gage HD

    更新日期:1993-01-01 00:00:00

  • EnPiT: filtered back-projection algorithm for helical CT using an n-Pi acquisition.

    abstract::In this paper, we formulate a reconstruction algorithm for an n-Pi acquisition, where n can be any positive odd integer. The algorithm is a generalization of the method presented in (Bontus et al. 2003). It is based on the results obtained by Katsevich (2004). For the algorithm, different sets of filter-lines have to ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2005.850545

    authors: Bontus C,Köhler T,Proksa R

    更新日期:2005-08-01 00:00:00

  • MITT: Medical Image Tracking Toolbox.

    abstract::Over the years, medical image tracking has gained considerable attention from both medical and research communities due to its widespread utility in a multitude of clinical applications, from functional assessment during diagnosis and therapy planning to structure tracking or image fusion during image-guided intervent...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2018.2840820

    authors: Queiros S,Morais P,Barbosa D,Fonseca JC,Vilaca JL,D'Hooge J

    更新日期:2018-11-01 00:00:00

  • A backprojection filtering algorithm for a spatially varying focal length collimator.

    abstract::Fan-beam collimators are used in single photon emission computed tomography to improve the sensitivity for imaging of small organs. The disadvantage of fan-beam collimation is the truncation of projection data surrounding the organ of interest or, in those cases of imaging large patients, of the organ itself producing...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.310886

    authors: Zeng GL,Gullberg GT

    更新日期:1994-01-01 00:00:00

  • Accurate localization of optic radiation during neurosurgery in an interventional MRI suite.

    abstract::Accurate localization of the optic radiation is key to improving the surgical outcome for patients undergoing anterior temporal lobe resection for the treatment of refractory focal epilepsy. Current commercial interventional magnetic resonance imaging (MRI) scanners are capable of performing anatomical and diffusion w...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2011.2179668

    authors: Daga P,Winston G,Modat M,White M,Mancini L,Cardoso MJ,Symms M,Stretton J,McEvoy AW,Thornton J,Micallef C,Yousry T,Hawkes DJ,Duncan JS,Ourselin S

    更新日期:2012-04-01 00:00:00

  • Application of micro-computed tomography with iodine staining to cardiac imaging, segmentation, and computational model development.

    abstract::Micro-computed tomography (micro-CT) has been widely used to generate high-resolution 3-D tissue images from small animals nondestructively, especially for mineralized skeletal tissues. However, its application to the analysis of soft cardiovascular tissues has been limited by poor inter-tissue contrast. Recent ex viv...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2012.2209183

    authors: Aslanidi OV,Nikolaidou T,Zhao J,Smaill BH,Gilbert SH,Holden AV,Lowe T,Withers PJ,Stephenson RS,Jarvis JC,Hancox JC,Boyett MR,Zhang H

    更新日期:2013-01-01 00:00:00

  • Measures of acutance and shape for classification of breast tumors.

    abstract::Most benign breast tumors possess well-defined, sharp boundaries that delineate them from surrounding tissues, as opposed to malignant tumors. Computer techniques proposed to date for tumor analysis have concentrated on shape factors of tumor regions and texture measures. While shape measures based on contours of tumo...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/42.650876

    authors: Rangayyan RM,El-Faramawy NM,Desautels JE,Alim OA

    更新日期:1997-12-01 00:00:00

  • Automated characterization of breast lesions imaged with an ultrafast DCE-MR protocol.

    abstract::Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) of the breast has become an invaluable tool in the clinical work-up of patients suspected of having breast carcinoma. The purpose of this study is to introduce novel features extracted from the kinetics of contrast agent uptake imaged by a short (100 s) vi...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2013.2281984

    authors: Platel B,Mus R,Welte T,Karssemeijer N,Mann R

    更新日期:2014-02-01 00:00:00

  • Authors' reply.

    abstract::The comment of Stig Steenstrup on the use of gray level entropy function in our paper' has been addressed. The entropy measure has not been used in the procedure of enhancement, but it has only been used to show statistically that the enhanced images have larger gray level entropy, and therefore better utilize the gra...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.1987.4307802

    authors: Dhawan AP,Gordon R

    更新日期:1987-01-01 00:00:00

  • Motion-compensated and gated cone beam filtered back-projection for 3-D rotational X-ray angiography.

    abstract::This paper presents a method to reconstruct moving objects from cone beam X-ray projections acquired during a single rotational run using a given motion vector field. The method is applicable to voxel driven cone-beam filtered back-projection reconstruction approaches. Here, a formulation based on the algorithm of Fel...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/tmi.2006.876147

    authors: Schäfer D,Borgert J,Rasche V,Grass M

    更新日期:2006-07-01 00:00:00

  • Robust Empirical Bayesian Reconstruction of Distributed Sources for Electromagnetic Brain Imaging.

    abstract::Electromagnetic brain imaging is the reconstruction of brain activity from non-invasive recordings of the magnetic fields and electric potentials. An enduring challenge in this imaging modality is estimating the number, location, and time course of sources, especially for the reconstruction of distributed brain source...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2019.2932290

    authors: Cai C,Diwakar M,Chen D,Sekihara K,Nagarajan SS

    更新日期:2020-03-01 00:00:00

  • Multi-channel microstrip transceiver arrays using harmonics for high field MR imaging in humans.

    abstract::Radio-frequency (RF) transceiver array design using primary and higher order harmonics for in vivo parallel magnetic resonance imaging imaging (MRI) and spectroscopic imaging is proposed. The improved electromagnetic decoupling performance, unique magnetic field distributions and high-frequency operation capabilities ...

    journal_title:IEEE transactions on medical imaging

    pub_type: 杂志文章

    doi:10.1109/TMI.2011.2166273

    authors: Wu B,Wang C,Lu J,Pang Y,Nelson SJ,Vigneron DB,Zhang X

    更新日期:2012-02-01 00:00:00